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PMC:7214331 / 68-3300 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
7 189-197 Species denotes patients Tax:9606
8 291-297 Species denotes people Tax:9606
9 12-20 Disease denotes COVID-19 MESH:C000657245
10 261-270 Disease denotes infection MESH:D007239
11 276-284 Disease denotes COVID-19 MESH:C000657245
22 391-397 Species denotes Turkey Tax:9103
23 601-609 Species denotes patients Tax:9606
24 726-734 Species denotes patients Tax:9606
25 738-748 Species denotes outpatient Tax:9606
26 1056-1064 Species denotes patients Tax:9606
27 620-629 Chemical denotes vitamin K MESH:D014812
28 663-671 Chemical denotes warfarin MESH:D014859
29 480-488 Disease denotes COVID-19 MESH:C000657245
30 885-894 Disease denotes infection MESH:D007239
31 900-908 Disease denotes COVID-19 MESH:C000657245
39 1254-1260 Species denotes people Tax:9606
40 1413-1421 Species denotes patients Tax:9606
41 1586-1594 Species denotes patients Tax:9606
42 1266-1286 Disease denotes deep vein thrombosis MESH:D020246
43 1301-1319 Disease denotes pulmonary embolism MESH:D011655
44 1435-1461 Disease denotes venous occlusion syndromes MESH:D020520
45 1477-1487 Disease denotes thrombosis MESH:D013927
49 1615-1623 Species denotes Patients Tax:9606
50 1731-1741 Disease denotes thrombosis MESH:D013927
51 1784-1807 Disease denotes valvular heart diseases MESH:D006349
55 1891-1899 Species denotes patients Tax:9606
56 2014-2022 Disease denotes COVID-19 MESH:C000657245
57 2023-2032 Disease denotes infection MESH:D007239
63 2084-2092 Species denotes patients Tax:9606
64 2065-2073 Disease denotes COVID-19 MESH:C000657245
65 2129-2149 Disease denotes deep vein thrombosis MESH:D020246
66 2189-2208 Disease denotes atrial fibrillation MESH:D001281
67 2293-2301 Disease denotes COVID-19 MESH:C000657245
73 2398-2406 Species denotes patients Tax:9606
74 2568-2576 Species denotes patients Tax:9606
75 2747-2755 Species denotes Patients Tax:9606
76 2423-2435 Disease denotes heart valves MESH:D006349
77 2724-2732 Disease denotes COVID-19 MESH:C000657245
80 3193-3201 Species denotes patients Tax:9606
81 2870-2878 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1271-1275 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T2 1294-1297 Body_part denotes leg http://purl.org/sig/ont/fma/fma24979
T3 1640-1651 Body_part denotes heart valve http://purl.org/sig/ont/fma/fma7110
T4 1793-1798 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T5 2134-2138 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T6 2423-2435 Body_part denotes heart valves http://purl.org/sig/ont/fma/fma7110
T7 2423-2428 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1266-1275 Body_part denotes deep vein http://purl.obolibrary.org/obo/UBERON_0035552
T2 1271-1275 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T3 1294-1297 Body_part denotes leg http://purl.obolibrary.org/obo/UBERON_0000978
T4 1640-1645 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T5 1646-1651 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T6 1793-1798 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T7 1847-1852 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T8 2129-2138 Body_part denotes deep vein http://purl.obolibrary.org/obo/UBERON_0035552
T9 2134-2138 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T10 2423-2428 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 12-20 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 261-270 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 276-284 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 480-488 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 885-894 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 900-908 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1276-1286 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T9 1301-1319 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T10 1477-1487 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T11 1731-1741 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T12 1784-1807 Disease denotes valvular heart diseases http://purl.obolibrary.org/obo/MONDO_0002869
T13 2014-2022 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2023-2032 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 2065-2073 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 2139-2149 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T17 2189-2208 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T18 2293-2301 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 2724-2732 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 2870-2878 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 30-33 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 391-397 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T3 971-972 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1271-1275 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T5 1271-1275 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T6 1294-1297 http://www.ebi.ac.uk/efo/EFO_0001411 denotes leg
T7 1640-1645 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T8 1640-1645 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T9 1640-1645 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T10 1640-1645 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T11 1646-1651 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T12 1793-1798 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T13 1793-1798 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T14 1793-1798 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T15 1793-1798 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T16 1847-1852 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T17 2134-2138 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T18 2134-2138 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T19 2423-2428 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T20 2423-2428 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T21 2423-2428 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T22 2423-2428 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T23 2429-2435 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valves
T24 2502-2509 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T25 2526-2527 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 2611-2612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 2674-2675 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 2802-2807 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T29 2843-2844 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 2943-2947 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T31 3071-3072 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 620-640 Chemical denotes vitamin K antagonist http://purl.obolibrary.org/obo/CHEBI_55347
T3 620-629 Chemical denotes vitamin K http://purl.obolibrary.org/obo/CHEBI_28384
T4 620-627 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T5 630-640 Chemical denotes antagonist http://purl.obolibrary.org/obo/CHEBI_48706
T6 663-671 Chemical denotes warfarin http://purl.obolibrary.org/obo/CHEBI_10033
T7 1171-1185 Chemical denotes anticoagulants http://purl.obolibrary.org/obo/CHEBI_50249
T8 1700-1713 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249
T9 2103-2116 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249
T10 2349-2362 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249
T11 3208-3221 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-182 Sentence denotes The current COVID-19 pandemic has led to many countries asking or requiring their citizens to stay home to avoid potentially contacting the disease or exposing others to the disease.
T3 183-285 Sentence denotes Older patients with comorbidities are at particular risk of developing severe infection with COVID-19.
T4 286-361 Sentence denotes Many people on anticoagulation are older and have significant comorbities.1
T5 362-489 Sentence denotes In many countries, including Turkey, governments have imposed restrictions on travel from home to limit the spread of COVID-19.
T6 490-704 Sentence denotes Although so-called “sheltering in place” is proving to be an effective way to decrease community transmission, patients receiving vitamin K antagonist (VKA) treatment, like warfarin, may be harmed by such policies.
T7 705-1073 Sentence denotes Routine reporting of patients to outpatient clinics of hospitals or laboratories for checking their international normalized ratio (INR) places them at risk for community-acquired infection from COVID-19, whereas not traveling for INR checks places them at risk for a complication of over- or under-anticoagulation as INR levels can be labile in many patients on VKAs.
T8 1074-1488 Sentence denotes According to the current national and international guidelines, although therapy with novel oral anticoagulants (NOACs) is suggested over VKAs, due to reimbursement problems, many people with deep vein thrombosis of the leg or pulmonary embolism are still receiving VKA therapy.2 , 3 VKAs are also used after venous stenting procedures in patients with chronic venous occlusion syndromes to avoid stent thrombosis.
T9 1489-1614 Sentence denotes Although there are no definite recommendations about anticoagulation after venous stenting, many patients are receiving VKAs.
T10 1615-1742 Sentence denotes Patients with mechanical heart valve replacement also need to use VKAs for long-term anticoagulant therapy to avoid thrombosis.
T11 1743-1874 Sentence denotes Current guidelines for the management of valvular heart diseases favor VKAs for long-term therapy after valve replacement surgery.4
T12 1875-2033 Sentence denotes Therefore, many patients need to travel to hospitals or laboratories to screen their INR levels, and it makes them more susceptible to the COVID-19 infection.
T13 2034-2393 Sentence denotes If possible during the current COVID-19 pandemic, patients requiring anticoagulant therapy for deep vein thrombosis, venous stent therapy, and nonvalvular atrial fibrillation should be converted to NOACs for decreasing their need to travel from home to avoid COVID-19 transmission without increasing their risk for anticoagulant therapy-related complications.
T14 2394-2667 Sentence denotes For patients with mechanical heart valves or who are unable to be treated with an NOAC therapy, INR in-home testing machines can be a convenient alternative method and allow patients to check their INR levels without a need for frequent visits to hospitals or laboratories.
T15 2668-2746 Sentence denotes Thus, a decrease in hospital visits leads to minimizing COVID-19 transmission.
T16 2747-2839 Sentence denotes Patients need to consult their doctors for interval of tests and results for adjusting VKAs.
T17 2840-3008 Sentence denotes As a result, considering that COVID-19 is transmitted by inhalation and close contact, the in-home INR test method and consulting the results by phone may be favorable.
T18 3009-3088 Sentence denotes For those who are suitable for NOACs should be converted from a VKA to an NOAC.
T19 3089-3232 Sentence denotes Such measures are important precautions to prevent the spread and inevitable consequences of disease in patients under anticoagulant therapies.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 254-270 Phenotype denotes severe infection http://purl.obolibrary.org/obo/HP_0032169
T2 1266-1286 Phenotype denotes deep vein thrombosis http://purl.obolibrary.org/obo/HP_0002625
T3 1301-1319 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T4 1435-1451 Phenotype denotes venous occlusion http://purl.obolibrary.org/obo/HP_0025322
T5 1784-1807 Phenotype denotes valvular heart diseases http://purl.obolibrary.org/obo/HP_0001654
T6 2129-2149 Phenotype denotes deep vein thrombosis http://purl.obolibrary.org/obo/HP_0002625
T7 2189-2208 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110