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PMC:7214329 / 4047-7312 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
84 1192-1198 Species denotes mouses Tax:10090
85 1317-1324 Species denotes patient Tax:9606
86 1040-1046 Chemical denotes oxygen MESH:D010100
87 1215-1220 Chemical denotes water MESH:D014867
88 1152-1160 Disease denotes elevator MESH:D006973
89 1385-1393 Disease denotes elevator MESH:D006973
96 250-258 Species denotes patients Tax:9606
97 565-572 Species denotes patient Tax:9606
98 192-200 Disease denotes COVID-19 MESH:C000657245
99 264-272 Disease denotes COVID-19 MESH:C000657245
100 359-364 Disease denotes fever MESH:D005334
101 664-669 Disease denotes fever MESH:D005334
106 1653-1661 Species denotes patients Tax:9606
107 1734-1739 Species denotes mouse Tax:10090
108 1817-1823 Chemical denotes oxygen MESH:D010100
109 1840-1848 Disease denotes elevator MESH:D006973
116 2667-2671 Gene denotes RdRp Gene:43740578
117 2691-2692 Gene denotes N Gene:43740575
118 2677-2689 Gene denotes nucleocapsid Gene:43740575
119 2399-2409 Species denotes SARS-CoV-2 Tax:2697049
120 2464-2474 Species denotes SARS-CoV-2 Tax:2697049
121 2606-2616 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T9 2410-2413 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 2617-2623 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T11 2637-2640 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12 2651-2654 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 2753-2757 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 1056-1061 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T6 1833-1838 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 192-200 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 264-272 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 2133-2135 Disease denotes AM http://purl.obolibrary.org/obo/MONDO_0020320
T34 2399-2407 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 2464-2472 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 2606-2614 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T21 94-95 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 116-118 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T23 284-286 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T24 935-941 http://purl.obolibrary.org/obo/CLO_0007225 denotes labels
T25 1056-1061 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T26 1122-1129 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices
T27 1192-1198 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouses
T28 1238-1239 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 1734-1739 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T30 1833-1838 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T31 2462-2463 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 2694-2699 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T33 2720-2721 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 2753-2757 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T35 2802-2803 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T36 3122-3126 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T37 3145-3153 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T38 3183-3186 http://purl.obolibrary.org/obo/CLO_0001562 denotes A 2
T39 3183-3186 http://purl.obolibrary.org/obo/CLO_0001563 denotes A 2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 596-602 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T3 775-781 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T4 1040-1046 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T5 1215-1220 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T6 1349-1355 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T7 1471-1477 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T8 1817-1823 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T9 1890-1892 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T10 2475-2487 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T11 2483-2487 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T12 2565-2567 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 1554-1569 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T4 1560-1569 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T5 2254-2275 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T6 2262-2275 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T7 2333-2354 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T8 2341-2354 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T31 0-7 Sentence denotes Methods
T32 9-22 Sentence denotes Study setting
T33 23-60 Sentence denotes This study was conducted in Wuhan No.
T34 61-219 Sentence denotes 7 Hospital, which was originally a comprehensive Grade 2A hospital and then became one of the first batch designated hospitals for COVID-19 in Hubei Province.
T35 220-293 Sentence denotes The hospital started to treat patients with COVID-19 on January 22, 2020.
T36 294-431 Sentence denotes It comprises general isolation wards, intensive care unit (ICU), fever clinic, clinical laboratory, office areas, and restrooms (Fig 1 ).
T37 432-805 Sentence denotes All regions of the hospital were divided into 2 categories: (1) moderate- and high-risk regions, including the medical areas such as patient room, nurses’ station, buffer room for taking off personal protective equipment (PPE), and fever clinic, and (2) low-risk regions, including the living quarters such as the restrooms, office areas, and buffer room for taking on PPE.
T38 806-925 Sentence denotes Fig 1 Room layout of the general isolation ward 1 and the living quarters showing environmental and air sampling sites.
T39 926-1262 Sentence denotes Numbered labels correspond to environmental sampling sites. ① beepers; ② bed rails; ③ desktops;④ bedside tables;⑤ oxygen cylinder valve;⑥ medical equipment such as ventilator, monitors, and X-ray devices, etc;⑦ door handles;⑧ elevator buttons;⑨ keyboards;⑩ computer mouses;⑪ telephones; ⑫ water machine buttons; A refers to air samples.
T40 1263-1501 Sentence denotes The medical area with moderate and high risk contains patient's room, nurses station, buffer room for taking off PPE, and elevator; the living quarters with low risk contains the rest rooms, office area, and buffer room for taking on PPE.
T41 1503-1520 Sentence denotes Sample collection
T42 1521-1684 Sentence denotes Flocked swabs, premoistened with viral transport medium, were collected from environmental surfaces that were frequently touched by patients or healthcare workers.
T43 1685-1923 Sentence denotes The surfaces included beeper, keyboard, computer mouse, telephone, door handle, desktop, medical equipment, bedrail, bedside table, oxygen cylinder valve, elevator button, and others such as refrigerator, IV port, and sample transfer box.
T44 1924-2252 Sentence denotes Air samples from medical areas were collected through natural precipitation according to the Hygienic Standard for Disinfection in Hospitals.9 All samples were collected under emergency conditions around 8:00 AM before routine cleaning and disinfection and were delivered to the clinical laboratory immediately after collection.
T45 2254-2294 Sentence denotes Reverse transcription PCR and sequencing
T46 2295-2414 Sentence denotes The suspension was used for real-time reverse transcription polymerase chain reaction (RT-PCR) assay of SARS-CoV-2 RNA.
T47 2415-2576 Sentence denotes The real-time RT-PCR assay was performed using a SARS-CoV-2 nucleic acid detection kit according to the manufacturer's protocol (Shanghai ZJ Bio-Tech Co., Ltd.).
T48 2577-2866 Sentence denotes Two different targets on the SARS-CoV-2 genome, namely, the RNA-dependent RNA polymerase (RdRp) and nucleocapsid (N) genes, were employed, and a third target, the envelope (E) gene, was used for real-time quantitative PCR.10 A sample was considered positive when the qPCR Ct value was ≤43.
T49 2868-2888 Sentence denotes Statistical analysis
T50 2889-2970 Sentence denotes Statistical analyses were performed using SPSS version 20.0 software (SPSS Inc.).
T51 2971-3182 Sentence denotes The differences in the positive rates between the medical areas and the living quarters and the general isolation ward and ICU were compared by the χ2 test; the Fisher exact test was used when data were limited.
T52 3183-3265 Sentence denotes A 2-sided α of less than 0.05 was considered to indicate statistical significance.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 359-364 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 664-669 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945