PMC:7212965 / 85047-86237
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T204 | 524-529 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T168 | 524-529 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T397 | 216-224 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T398 | 627-635 | Disease | denotes | Diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T399 | 1030-1038 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T649 | 136-138 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T650 | 150-157 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T651 | 205-211 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T652 | 433-435 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T653 | 442-444 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T654 | 491-493 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T655 | 510-512 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T656 | 524-529 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T657 | 524-529 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T658 | 696-698 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T659 | 1000-1002 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T660 | 1079-1080 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T661 | 1103-1110 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T198 | 863-865 | Chemical | denotes | GI | http://purl.obolibrary.org/obo/CHEBI_73907 |
| T199 | 890-892 | Chemical | denotes | GI | http://purl.obolibrary.org/obo/CHEBI_73907 |
| T200 | 1017-1019 | Chemical | denotes | GI | http://purl.obolibrary.org/obo/CHEBI_73907 |
| T201 | 1163-1166 | Chemical | denotes | AST | http://purl.obolibrary.org/obo/CHEBI_76649 |
| T202 | 1188-1190 | Chemical | denotes | NR | http://purl.obolibrary.org/obo/CHEBI_145751 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T389 | 627-635 | Phenotype | denotes | Diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T390 | 737-745 | Phenotype | denotes | vomiting | http://purl.obolibrary.org/obo/HP_0002013 |
| T391 | 847-851 | Phenotype | denotes | pain | http://purl.obolibrary.org/obo/HP_0012531 |
| T392 | 1030-1038 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T393 | 1042-1057 | Phenotype | denotes | nausea/vomiting | http://purl.obolibrary.org/obo/HP_0002017 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T817 | 0-100 | Sentence | denotes | Nobel, 202047New York–Presbyterian Hospital/Columbia University Irving Medical CenterNew YorkDates: |
| T818 | 101-135 | Sentence | denotes | 3/10/2020-3/21/2020Last follow-up: |
| T819 | 136-174 | Sentence | denotes | 18 days after testing n = 278Survival: |
| T820 | 175-195 | Sentence | denotes | 3.2% died,Inclusion: |
| T821 | 196-355 | Sentence | denotes | Patients tested for COVID-19 at clinic or emergency department for respiratory symptoms with intent to hospitalize or the same symptoms in essential personnel. |
| T822 | 356-402 | Sentence | denotes | Excluded patients with insufficient data (42). |
| T823 | 403-432 | Sentence | denotes | Charts randomly selected.Age: |
| T824 | 433-509 | Sentence | denotes | 11% aged 18–30 y, 25% aged 31–50 y, 37% aged 51–70 y, and 27% aged >70 ySex: |
| T825 | 510-564 | Sentence | denotes | 48% femalesGI/liver comorbidities: NRDisease severity: |
| T826 | 565-626 | Sentence | denotes | 74.5% admitted to hospital, 15.8% admitted to ICU, 3.2% died. |
| T827 | 627-636 | Sentence | denotes | Diarrhea: |
| T828 | 637-746 | Sentence | denotes | 20.1% (56)Present on admission42/207 admitted to hospital, 11/44 admitted to ICU, 0/9 died.Vomiting/vomiting: |
| T829 | 747-875 | Sentence | denotes | 22.7% (63)Present on admission51/207 admitted to hospital, 8/44 admitted to ICU, 0/9 died.Abdominal pain: NR35% had GI symptoms. |
| T830 | 876-1190 | Sentence | denotes | Patients with GI symptoms were more likely to have illness duration of ≥1 week (33%) compared to patients without symptoms (22%).Presence of GI symptoms (diarrhea or nausea/vomiting) was associated with a 70% increased risk of testing positive (adjusted odds ratio 1.7; 95% CI, 1.1–2.5) AST: NRALT: NRBilirubin: NR |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2192 | 1017-1019 | Gene | denotes | GI | Gene:2770 |
| 2193 | 890-892 | Gene | denotes | GI | Gene:2770 |
| 2194 | 863-865 | Gene | denotes | GI | Gene:2770 |
| 2273 | 196-204 | Species | denotes | Patients | Tax:9606 |
| 2274 | 365-373 | Species | denotes | patients | Tax:9606 |
| 2275 | 876-884 | Species | denotes | Patients | Tax:9606 |
| 2276 | 973-981 | Species | denotes | patients | Tax:9606 |
| 2292 | 263-274 | Species | denotes | respiratory | Tax:12814 |