PMC:7212965 / 58975-60140
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T136 | 210-216 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T137 | 337-342 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T104 | 210-216 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T105 | 337-342 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T294 | 191-199 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T295 | 361-372 | Disease | denotes | hepatitis B | http://purl.obolibrary.org/obo/MONDO_0005344 |
| T296 | 361-370 | Disease | denotes | hepatitis | http://purl.obolibrary.org/obo/MONDO_0002251 |
| T297 | 478-486 | Disease | denotes | Diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T413 | 337-342 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T414 | 337-342 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T415 | 371-372 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T416 | 868-870 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T417 | 887-889 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T418 | 940-942 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
| T419 | 1030-1032 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T76566 | 381-388 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T30260 | 404-406 | Chemical | denotes | GI | http://purl.obolibrary.org/obo/CHEBI_73907 |
| T87741 | 801-804 | Chemical | denotes | AST | http://purl.obolibrary.org/obo/CHEBI_76649 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T263 | 361-370 | Phenotype | denotes | hepatitis | http://purl.obolibrary.org/obo/HP_0012115 |
| T264 | 478-486 | Phenotype | denotes | Diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T265 | 725-729 | Phenotype | denotes | pain | http://purl.obolibrary.org/obo/HP_0012531 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T415 | 0-42 | Sentence | denotes | Chen, 202072Tongji Hospital (Wuhan)Dates: |
| T416 | 43-79 | Sentence | denotes | 01/13/2020-02/12/2020Last follow-up: |
| T417 | 80-107 | Sentence | denotes | 02/28/2020 n = 274Survival: |
| T418 | 108-146 | Sentence | denotes | 52.2% death, 47.8% recoveredInclusion: |
| T419 | 147-292 | Sentence | denotes | Moderate severity, severe or critically ill COVID-19 patients (throat swab or bronchoalveolar lavage RT-PCR) who were deceased or discharged.Age: |
| T420 | 293-321 | Sentence | denotes | M 62.0 y (IQR, 44–70 y) sex: |
| T421 | 322-357 | Sentence | denotes | 37.6% femaleGI/liver comorbidities: |
| T422 | 358-477 | Sentence | denotes | 4% hepatitis B surface antigen positivity, 1% GI diseasesDisease severity: moderate severity, severe or critically ill. |
| T423 | 478-487 | Sentence | denotes | Diarrhea: |
| T424 | 488-566 | Sentence | denotes | 28.1% (n = 77)Present on admission27/113 deceased and 50/161 dischargedNausea: |
| T425 | 567-645 | Sentence | denotes | 8.8% (n = 24)Present on admission8/113 deceased and 16/161 dischargedVomiting: |
| T426 | 646-730 | Sentence | denotes | 5.8% (n = 16)Present on admission6/113 deceased and 10/161 dischargedAbdominal pain: |
| T427 | 731-809 | Sentence | denotes | 6.9% (n = 19)Present on admission6/113 deceased and 13/161 discharged AST >40: |
| T428 | 810-875 | Sentence | denotes | 30.7% (84)59/113 deceased and 25/161 dischargedM 30 (IQR, 22–46). |
| T429 | 876-943 | Sentence | denotes | Deceased M 45 (IQR, 31–67) and discharged M 25 (IQR, 20–33)ALT >41: |
| T430 | 944-1009 | Sentence | denotes | 21.9% (60)30/113 deceased and 30/161 dischargedM 23 (IQR, 15–38). |
| T431 | 1010-1099 | Sentence | denotes | Deceased M 28 (IQR, 18–47) and discharged M 20 (IQR, 15–32)BilirubinM 0.6 (IQR, 0.4–0.8). |
| T432 | 1100-1165 | Sentence | denotes | Deceased M 0.7 (IQR, 0.6–1.0) and discharged M 0.5 (IQR, 0.3–0.7) |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2219 | 404-406 | Gene | denotes | GI | Gene:2770 |
| 2233 | 200-208 | Species | denotes | patients | Tax:9606 |
| 2296 | 1069-1079 | Chemical | denotes | BilirubinM | |
| 2332 | 114-119 | Disease | denotes | death | MESH:D003643 |
| 2333 | 176-190 | Disease | denotes | critically ill | MESH:D016638 |
| 2334 | 191-199 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 2335 | 361-372 | Disease | denotes | hepatitis B | MESH:D006509 |
| 2336 | 462-476 | Disease | denotes | critically ill | MESH:D016638 |
| 2337 | 478-486 | Disease | denotes | Diarrhea | MESH:D003967 |
| 2338 | 705-729 | Disease | denotes | dischargedAbdominal pain | MESH:D010146 |