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PMC:7212965 / 2677-4249 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T15 109-120 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T16 161-170 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 172-191 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T18 214-222 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 224-257 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T20 336-344 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 372-380 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T22 470-479 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T23 495-519 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T24 521-529 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 587-595 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 705-713 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 1205-1213 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1306-1318 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T29 1328-1335 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T30 1349-1357 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T24 23-26 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 36-41 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T26 551-563 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T27 576-578 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T28 792-793 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1161-1162 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1221-1222 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 161-170 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 172-191 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T17 470-479 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 1306-1318 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T19 1328-1335 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-863 Sentence denotes The coronavirus family has 4 common human coronaviruses (ie, 229E, NL63, OC43, and HKU1) associated with the common cold, and 3 strains that are associated with pneumonia, respiratory failure, and death, including SARS-CoV (severe acute respiratory syndrome coronavirus), MERS-CoV (Middle Eastern respiratory syndrome coronavirus), and SARS-CoV-2.1 The novel coronavirus, SARS-CoV-2, was first described in December 2019 in patients in Wuhan, China who developed severe pneumonia, and was named coronavirus disease 2019 (COVID-19) by the World Health Organization on February 11, 2020.2 COVID-19 is estimated to have resulted in 2,896,633 cases in 185 countries with 202,832 deaths as of April 25, 2020.3 COVID-19 was first reported in the United States on January 20, 2020 and accounted for a total number of 938,154 cases and 53,755 deaths as of April 25, 2020.
T24 864-1572 Sentence denotes In the United States, an early analysis of the first 4226 cases from the Centers for Disease Control and Prevention as of March 16, 2020 revealed estimated rates of hospitalization of 20.7%–31.4%; intensive care unit admission of 4.9%–11.5%; and case fatality of 1.8%–3.4%.4 More recent data from a cohort of 5700 hospitalized patients with COVID-19 within a large health care system in New York City revealed common comorbidities, including hypertension (56.6%), obesity (41.7%), and diabetes (33.8%), and reported that 373 patients (14.2%) required treatment in the intensive care unit, and 320 patients (12.2%) received invasive mechanical ventilation, in whom the mortality rate was 88.1% (282 of 320)].5

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
111 4-15 Species denotes coronavirus Tax:11118
112 36-41 Species denotes human Tax:9606
113 42-55 Species denotes coronaviruses Tax:11118
114 214-222 Species denotes SARS-CoV Tax:694009
115 224-269 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
116 272-280 Species denotes MERS-CoV Tax:1335626
117 318-329 Species denotes coronavirus Tax:11118
118 336-346 Species denotes SARS-CoV-2 Tax:2697049
119 353-370 Species denotes novel coronavirus Tax:2697049
120 372-382 Species denotes SARS-CoV-2 Tax:2697049
121 424-432 Species denotes patients Tax:9606
122 1191-1199 Species denotes patients Tax:9606
123 1389-1397 Species denotes patients Tax:9606
124 1461-1469 Species denotes patients Tax:9606
125 297-308 Species denotes respiratory Tax:12814
126 109-120 Disease denotes common cold MESH:D003139
127 161-170 Disease denotes pneumonia MESH:D011014
128 172-191 Disease denotes respiratory failure MESH:D012131
129 197-202 Disease denotes death MESH:D003643
130 470-479 Disease denotes pneumonia MESH:D011014
131 495-519 Disease denotes coronavirus disease 2019 MESH:C000657245
132 521-529 Disease denotes COVID-19 MESH:C000657245
133 587-595 Disease denotes COVID-19 MESH:C000657245
134 675-681 Disease denotes deaths MESH:D003643
135 705-713 Disease denotes COVID-19 MESH:C000657245
136 835-841 Disease denotes deaths MESH:D003643
137 1205-1213 Disease denotes COVID-19 MESH:C000657245
138 1306-1318 Disease denotes hypertension MESH:D006973
139 1328-1335 Disease denotes obesity MESH:D009765
140 1349-1357 Disease denotes diabetes MESH:D003920
141 1532-1541 Disease denotes mortality MESH:D003643