PMC:7212949 / 78347-80160
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T417 | 449-457 | Body_part | denotes | placenta | http://purl.org/sig/ont/fma/fma63934 |
| T418 | 1228-1233 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T419 | 1235-1243 | Body_part | denotes | placenta | http://purl.org/sig/ont/fma/fma63934 |
| T420 | 1245-1251 | Body_part | denotes | breast | http://purl.org/sig/ont/fma/fma9601 |
| T421 | 1252-1256 | Body_part | denotes | milk | http://purl.org/sig/ont/fma/fma62100 |
| T422 | 1602-1615 | Body_part | denotes | immune system | http://purl.org/sig/ont/fma/fma9825 |
| T423 | 1671-1679 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T196 | 449-457 | Body_part | denotes | placenta | http://purl.obolibrary.org/obo/UBERON_0001987 |
| T197 | 1228-1233 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T198 | 1235-1243 | Body_part | denotes | placenta | http://purl.obolibrary.org/obo/UBERON_0001987 |
| T199 | 1245-1251 | Body_part | denotes | breast | http://purl.obolibrary.org/obo/UBERON_0000310 |
| T200 | 1252-1256 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T201 | 1602-1615 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T660 | 0-4 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T661 | 449-464 | Disease | denotes | placenta previa | http://purl.obolibrary.org/obo/MONDO_0005918 |
| T662 | 620-624 | Disease | denotes | IUGR | http://purl.obolibrary.org/obo/MONDO_0005030 |
| T663 | 700-713 | Disease | denotes | Renal failure | http://purl.obolibrary.org/obo/MONDO_0001106 |
| T664 | 1022-1031 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T665 | 1035-1039 | Disease | denotes | IUGR | http://purl.obolibrary.org/obo/MONDO_0005030 |
| T666 | 1041-1056 | Disease | denotes | oligohydramnios | http://purl.obolibrary.org/obo/MONDO_0005881 |
| T667 | 1098-1107 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T668 | 1173-1177 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T669 | 1330-1339 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T670 | 1546-1550 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T671 | 1551-1560 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T672 | 1724-1733 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T806 | 449-457 | http://purl.obolibrary.org/obo/UBERON_0001987 | denotes | placenta |
| T807 | 449-457 | http://www.ebi.ac.uk/efo/EFO_0001407 | denotes | placenta |
| T808 | 669-671 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T809 | 927-931 | http://purl.obolibrary.org/obo/PR_000001786 | denotes | PROM |
| T810 | 1142-1143 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T811 | 1153-1159 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T812 | 1228-1233 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T813 | 1228-1233 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T814 | 1235-1243 | http://purl.obolibrary.org/obo/UBERON_0001987 | denotes | placenta |
| T815 | 1235-1243 | http://www.ebi.ac.uk/efo/EFO_0001407 | denotes | placenta |
| T816 | 1245-1251 | http://purl.obolibrary.org/obo/UBERON_0000310 | denotes | breast |
| T817 | 1283-1284 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T818 | 1302-1303 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T819 | 1306-1307 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T820 | 1310-1311 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T821 | 1314-1315 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T822 | 1602-1615 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
| T823 | 1796-1801 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T49621 | 768-771 | Chemical | denotes | DIC | http://purl.obolibrary.org/obo/CHEBI_4305|http://purl.obolibrary.org/obo/CHEBI_53092 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T97 | 608-617 | http://purl.obolibrary.org/obo/GO_0007565 | denotes | gestation |
| T98 | 1680-1689 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T99 | 1711-1720 | http://purl.obolibrary.org/obo/GO_0007565 | denotes | gestation |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T501 | 480-491 | Phenotype | denotes | miscarriage | http://purl.obolibrary.org/obo/HP_0005268 |
| T502 | 572-588 | Phenotype | denotes | Preterm delivery | http://purl.obolibrary.org/obo/HP_0001622 |
| T503 | 620-624 | Phenotype | denotes | IUGR | http://purl.obolibrary.org/obo/HP_0001511 |
| T504 | 700-713 | Phenotype | denotes | Renal failure | http://purl.obolibrary.org/obo/HP_0000083 |
| T505 | 738-744 | Phenotype | denotes | Sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
| T506 | 768-771 | Phenotype | denotes | DIC | http://purl.obolibrary.org/obo/HP_0005521 |
| T507 | 971-985 | Phenotype | denotes | fetal distress | http://purl.obolibrary.org/obo/HP_0025116 |
| T508 | 1035-1039 | Phenotype | denotes | IUGR | http://purl.obolibrary.org/obo/HP_0001511 |
| T509 | 1041-1056 | Phenotype | denotes | oligohydramnios | http://purl.obolibrary.org/obo/HP_0001562 |
| T510 | 1806-1813 | Phenotype | denotes | hypoxia | http://purl.obolibrary.org/obo/HP_0012418 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T780 | 0-56 | Sentence | denotes | SARS (only studies with large study population included) |
| T781 | 57-385 | Sentence | denotes | Study Robertson et al (2004)N = 1, confirmed cases (19 weeks)Case report Wong et al (2004)N = 12, confirmed casesRetrospective study Lam et al (2004)N = 10 pregnant, 40 nonpregnant confirmed casesCase-control study Stockman et al (2004)N = 1, confirmed case (7 weeks)Case report Ng et al (2009)7 placentasClinicopathologic study |
| T782 | 386-569 | Sentence | denotes | Clinical features Healthy infant at term via C-section (due to placenta previa) • Spontaneous miscarriage (57%) in first trimester pregnancies (confounded by treatment with Ribavirin) |
| T783 | 570-617 | Sentence | denotes | • Preterm delivery (80%) in >24 weeks gestation |
| T784 | 618-649 | Sentence | denotes | • IUGR (16.6%) • ICU admission: |
| T785 | 650-697 | Sentence | denotes | 60% (pregnant) vs. 18% (nonpregnant) (P = 0.01) |
| T786 | 698-714 | Sentence | denotes | • Renal failure: |
| T787 | 715-735 | Sentence | denotes | 30% vs. 0 (P = 0.01) |
| T788 | 736-745 | Sentence | denotes | • Sepsis: |
| T789 | 746-765 | Sentence | denotes | 20% vs 0 (P = 0.04) |
| T790 | 766-772 | Sentence | denotes | • DIC: |
| T791 | 773-792 | Sentence | denotes | 20% vs 0 (P = 0.04) |
| T792 | 793-801 | Sentence | denotes | • Death: |
| T793 | 802-821 | Sentence | denotes | 30% vs 0 (P = 0.01) |
| T794 | 822-931 | Sentence | denotes | (2/3 in second and third trimesters)• Hospital stay longer in pregnant patients (P = 0.01) • Spontaneous PROM |
| T795 | 932-1032 | Sentence | denotes | • Healthy infant via C-section (due to fetal distress) • Preterm birth (delivery in acute infection) |
| T796 | 1033-1108 | Sentence | denotes | • IUGR, oligohydramnios, SGA (convalescent after third trimester infection) |
| T797 | 1109-1284 | Sentence | denotes | Key findings on investigations N/A Newborns tested negative for SARS ↑LDH in pregnant patients(P = 0.04, <0.0001) Cord blood, placenta, breast milk negative for antibodies N/A |
| T798 | 1285-1359 | Sentence | denotes | Histopathology N/A N/A N/A N/A Convalescent, infection in third trimester: |
| T799 | 1360-1449 | Sentence | denotes | Extensive fetal thrombotic vasculopathy (FTV), sharply demarcated areas of necrotic villi |
| T800 | 1450-1668 | Sentence | denotes | Key study findings and message Healthy mother and infant, no vertical transmission No perinatal SARS infection Physiologic pregnancy related changes in immune system and respiratory mechanics • No vertical transmission |
| T801 | 1669-1813 | Sentence | denotes | • Antibody formation may be influenced by gestation at infection FTV possibly due to pro-thrombotic state, induced directly by virus, or hypoxia |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45872 | 45-54 | UBERON:0001987 | denotes | n include |
| T1678 | 102-107 | GO:0016265 | denotes | cases |
| T1679 | 166-171 | GO:0016265 | denotes | asesR |
| T1680 | 290-294 | SP_9 | denotes | 04)N |
| T98348 | 381-392 | GO:0007565 | denotes | tudy Clinic |
| T35980 | 393-399 | UBERON:0012101 | denotes | l feat |
| T1683 | 404-409 | UBERON:0002405;GO:0006955 | denotes | Healt |
| T66011 | 410-418 | GO:0006955 | denotes | y infant |
| T85064 | 501-510 | GO:0007567;UBERON:0012101 | denotes | first tri |
| T1686 | 511-516 | GO:0016265 | denotes | ester |
| T99539 | 717-725 | GO:0007565 | denotes | % vs. 0 |
| T40269 | 1067-1075 | SP_7 | denotes | alescent |
| T74819 | 1109-1114 | GO:0016265 | denotes | Key f |
| T60115 | 1142-1148 | GO:0007567 | denotes | A Newb |
| T86797 | 1253-1261 | SP_7 | denotes | ilk nega |
| T1692 | 1280-1292 | UBERON:0000995 | denotes | N/A Histopa |
| T31058 | 1422-1430 | SP_7 | denotes | ted area |
| T20424 | 1593-1608 | GO:0016265 | denotes | anges in immune |
| T79758 | 1610-1614 | UBERON:0002107 | denotes | yste |
| T1696 | 1739-1745 | GO:0016265 | denotes | ossibl |