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PMC:7212949 / 61608-64058 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T352 126-132 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T353 375-381 Body_part denotes Muscle http://purl.org/sig/ont/fma/fma32558
T354 475-487 Body_part denotes neck muscles http://purl.org/sig/ont/fma/fma9617
T355 480-487 Body_part denotes muscles http://purl.org/sig/ont/fma/fma32558
T356 525-537 Body_part denotes hand muscles http://purl.org/sig/ont/fma/fma37372
T357 530-537 Body_part denotes muscles http://purl.org/sig/ont/fma/fma32558
T358 542-548 Body_part denotes Muscle http://purl.org/sig/ont/fma/fma32558
T359 660-669 Body_part denotes myofibril http://purl.org/sig/ont/fma/fma67718
T360 746-752 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T361 941-947 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T362 998-1004 Body_part denotes Muscle http://purl.org/sig/ont/fma/fma32558
T363 1142-1147 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T364 1164-1173 Body_part denotes myofibril http://purl.org/sig/ont/fma/fma67718
T365 1399-1405 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T366 1572-1578 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T367 1619-1623 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T368 2194-2199 Body_part denotes trunk http://purl.org/sig/ont/fma/fma7181

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T185 475-479 Body_part denotes neck http://purl.obolibrary.org/obo/UBERON_0000974
T186 525-529 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T187 1619-1623 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T188 2194-2199 Body_part denotes trunk http://purl.obolibrary.org/obo/UBERON_0002100

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T511 33-41 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T512 74-82 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T513 317-325 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T514 340-344 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T515 366-370 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T516 591-599 Disease denotes myopathy http://purl.obolibrary.org/obo/MONDO_0005336
T517 620-628 Disease denotes myopathy http://purl.obolibrary.org/obo/MONDO_0005336
T518 839-847 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T519 928-936 Disease denotes Myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T521 980-988 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T522 1092-1100 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T523 1116-1124 Disease denotes myopathy http://purl.obolibrary.org/obo/MONDO_0005336
T524 1196-1204 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T525 1242-1251 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T526 1295-1303 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T527 1351-1359 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T528 1360-1369 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T529 1470-1472 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T530 1559-1567 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T531 1652-1654 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T532 1838-1846 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T533 1880-1882 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T534 1938-1946 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T535 2110-2119 Disease denotes urticaria http://purl.obolibrary.org/obo/MONDO_0005492
T536 2125-2135 Disease denotes chickenpox http://purl.obolibrary.org/obo/MONDO_0005700
T537 2420-2428 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T630 126-132 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T631 126-132 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T632 126-132 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T633 126-132 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T634 196-198 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T635 375-381 http://purl.obolibrary.org/obo/UBERON_0001630 denotes Muscle
T636 375-381 http://purl.obolibrary.org/obo/UBERON_0005090 denotes Muscle
T637 375-381 http://www.ebi.ac.uk/efo/EFO_0000801 denotes Muscle
T638 375-381 http://www.ebi.ac.uk/efo/EFO_0001949 denotes Muscle
T639 465-470 http://www.ebi.ac.uk/efo/EFO_0000876 denotes limbs
T640 475-479 http://www.ebi.ac.uk/efo/EFO_0000967 denotes neck
T641 480-487 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscles
T642 530-537 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscles
T643 542-548 http://purl.obolibrary.org/obo/UBERON_0001630 denotes Muscle
T644 542-548 http://purl.obolibrary.org/obo/UBERON_0005090 denotes Muscle
T645 542-548 http://www.ebi.ac.uk/efo/EFO_0000801 denotes Muscle
T646 542-548 http://www.ebi.ac.uk/efo/EFO_0001949 denotes Muscle
T647 633-634 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T648 746-752 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T649 746-752 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T650 746-752 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T651 746-752 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T652 941-947 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T653 941-947 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T654 941-947 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T655 941-947 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T656 998-1004 http://purl.obolibrary.org/obo/UBERON_0001630 denotes Muscle
T657 998-1004 http://purl.obolibrary.org/obo/UBERON_0005090 denotes Muscle
T658 998-1004 http://www.ebi.ac.uk/efo/EFO_0000801 denotes Muscle
T659 998-1004 http://www.ebi.ac.uk/efo/EFO_0001949 denotes Muscle
T660 1061-1064 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T661 1142-1147 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T662 1264-1267 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T663 1320-1321 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T664 1375-1377 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T665 1399-1405 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T666 1399-1405 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T667 1399-1405 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T668 1399-1405 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T669 1442-1445 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T670 1515-1517 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T671 1520-1522 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T672 1572-1578 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T673 1572-1578 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T674 1572-1578 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T675 1572-1578 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T676 1619-1623 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T677 1619-1623 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T678 1693-1694 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T679 1751-1752 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T680 1803-1806 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T681 2007-2008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T682 2268-2269 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T683 2360-2363 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T73377 156-166 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T47 277-287 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T89471 583-590 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T49 1451-1461 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T76 542-556 http://purl.obolibrary.org/obo/GO_0014889 denotes Muscle atrophy
T77 670-678 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T78 670-678 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T79 670-678 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T80 670-678 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T81 941-955 http://purl.obolibrary.org/obo/GO_0014889 denotes muscle atrophy

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T370 87-94 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T371 126-141 Phenotype denotes muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T372 146-166 Phenotype denotes increased creatinine http://purl.obolibrary.org/obo/HP_0003259
T373 375-390 Phenotype denotes Muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T374 519-529 Phenotype denotes small hand http://purl.obolibrary.org/obo/HP_0200055
T375 542-556 Phenotype denotes Muscle atrophy http://purl.obolibrary.org/obo/HP_0003202
T376 591-599 Phenotype denotes myopathy http://purl.obolibrary.org/obo/HP_0003198
T377 620-628 Phenotype denotes myopathy http://purl.obolibrary.org/obo/HP_0003198
T378 928-936 Phenotype denotes Myositis http://purl.obolibrary.org/obo/HP_0100614
T379 941-955 Phenotype denotes muscle atrophy http://purl.obolibrary.org/obo/HP_0003202
T380 998-1013 Phenotype denotes Muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T381 1116-1124 Phenotype denotes myopathy http://purl.obolibrary.org/obo/HP_0003198
T382 1304-1311 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T383 1399-1410 Phenotype denotes muscle pain http://purl.obolibrary.org/obo/HP_0003326
T384 1572-1584 Phenotype denotes muscle aches http://purl.obolibrary.org/obo/HP_0003326
T385 2093-2097 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T386 2110-2119 Phenotype denotes urticaria http://purl.obolibrary.org/obo/HP_0001025
T387 2204-2212 Phenotype denotes pruritis http://purl.obolibrary.org/obo/HP_0000989
T388 2296-2306 Phenotype denotes chilblains http://purl.obolibrary.org/obo/HP_0009710

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T622 0-31 Sentence denotes MUSCULOCUTANEOUS MANIFESTATIONS
T623 33-41 Sentence denotes SARS-CoV
T624 42-917 Sentence denotes As many as 60% of patients with SARS-CoV had myalgia with up to 30% presenting with muscle weakness and increased creatinine phosphokinase (Table 6).10 , 34 , 117, 118, 119 However, there was no statistically significant difference in creatinine phosphokinase levels between SARS-CoV patients with ARDS vs. patients without ARDS.117 Muscle weakness was typically symmetric and involves truncal and weakness of the proximal limbs and neck muscles with sparing of the facial and small hand muscles.119 Muscle atrophy may also be the result of steroid myopathy or critical illness myopathy 119 A variable degree of focal myofibril necrosis noted postmortem without evidence of viral particles suggests that muscle damage is likely the result of immune-mediated damage.119 Cutaneous manifestations of SARS-CoV hasn't yet been reported in the literature to the authors’ knowledge.
T625 919-927 Sentence denotes MERS-CoV
T626 928-1293 Sentence denotes Myositis and muscle atrophy are less prevalent than SARS-CoV.61 , 120 Muscle weakness was common in patients with MERS-CoV (Table 6).114 Pathologic specimens mimic SARS-CoV specimens with myopathy and inflammatory cells in the areas of myofibril atrophy.61 Similar to SARS-CoV, cutaneous manifestation of MERS-CoV infection is rare and has not been widely reported.
T627 1295-1303 Sentence denotes COVID-19
T628 1304-1787 Sentence denotes Myalgia is also a common presenting symptom of COVID-19 infection, and 36% of patients develop muscle pain during their illness (Table 6).121 High creatinine kinase (CK) levels present in 14% to 33% of patients.22 , 41 , 106 , 122 Patients with suspected COVID-19 and muscle aches were more likely to have abnormal lung imaging findings.122 Higher CK levels noted in ICU-level patients in a study compared to non-ICU patients, although it was not a statistically significant finding.
T629 1788-1905 Sentence denotes Rhabdomyolosis has been reported in patients with COVID-19 with MYO levels >12,000 ug/L and CK levels >11,000 U/L.123
T630 1906-2001 Sentence denotes The cutaneous manifestations of COVID-19 are not widely known beyond the dermatology community.
T631 2002-2226 Sentence denotes From a series of 88 patients 20% developed cutaneous manifestations including erythematous rash, widespread urticaria, and chickenpox like vesicles.124 The most common region involved was the trunk and pruritis was uncommon.
T632 2227-2450 Sentence denotes Several recent case series have reported a viral exanthum similar to chilblains disease in patients with COVID-19.125 To date, there has been no correlation between cutaneous manifestations of COVID-19 and disease severity.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1441 394-405 UBERON:0002349 denotes typically
T1442 870-880 UBERON:0001004 denotes ed in the
T1443 949-957 SP_9 denotes trophy a
T1444 959-970 SP_9 denotes less preva
T1445 971-981 SP_9;UBERON:0001004 denotes ent than S
T1446 982-1003 SP_9 denotes RS-CoV.61 , 120 Muscl
T1447 1005-1013 SP_10 denotes weakness
T1448 1015-1027 SP_10 denotes as common in
T1449 1028-1038 SP_10;UBERON:0001004 denotes patients w
T1450 1039-1059 SP_10 denotes th MERS-CoV (Table 6
T1451 1069-1081 UBERON:0002204 denotes ologic speci
T1452 1099-1107 SP_10 denotes V specim
T1453 1109-1117 SP_9 denotes s with m
T1454 1122-1130 SP_7 denotes hy and i
T1455 1140-1148 GO:0030016 denotes y cells
T1456 1149-1160 GO:0050817 denotes n the areas
T1457 1172-1180 GO:0030016 denotes l atroph
T1458 1214-1222 CHEBI:35341;CHEBI:35341 denotes s manife
T1459 1228-1233 NCBITaxon:10239 denotes n of
T1460 1327-1332 UBERON:0002405 denotes n pre
T1461 1365-1372 CHEBI:35341;CHEBI:35341 denotes tion, a
T1462 1436-1443 UBERON:0000948 denotes le 6).1
T1463 1516-1526 UBERON:0011900 denotes 2 , 41 , 1
T1464 1531-1541 UBERON:0011895 denotes 122 Patien
T1465 1599-1610 CL:0000235 denotes ly to have
T1466 1624-1630 UBERON:0005090 denotes imagin
T1467 1919-1929 UBERON:0001004 denotes manifesta
T1468 1997-2005 SP_9 denotes ity. Fro
T1469 2007-2018 SP_9 denotes a series of
T1470 2019-2029 SP_9;UBERON:0001004 denotes 88 patient
T1471 2030-2050 SP_9 denotes 20% developed cutan
T1472 2052-2060 SP_10 denotes us manif
T1473 2062-2074 SP_10 denotes tations incl
T1474 2075-2085 SP_10;UBERON:0001004 denotes ding eryth
T1475 2086-2106 SP_10 denotes matous rash, widespr
T1476 2166-2170 SP_10 denotes mon
T1477 2250-2258 CHEBI:36357;CHEBI:36357 denotes ies have
T1478 2394-2408 GO:0042571 denotes taneous manife
T1479 2410-2415 UBERON:0002405 denotes ation
T1480 2416-2425 GO:0032991 denotes of COVID
T1481 2437-2448 GO:0007631 denotes ase severit

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1504 60-68 Species denotes patients Tax:9606
1505 74-82 Species denotes SARS-CoV Tax:694009
1506 317-325 Species denotes SARS-CoV Tax:694009
1507 326-334 Species denotes patients Tax:9606
1508 349-357 Species denotes patients Tax:9606
1509 839-847 Species denotes SARS-CoV Tax:694009
1510 156-166 Chemical denotes creatinine MESH:D003404
1511 277-287 Chemical denotes creatinine MESH:D003404
1512 87-94 Disease denotes myalgia MESH:D063806
1513 126-141 Disease denotes muscle weakness MESH:D018908
1514 340-344 Disease denotes ARDS MESH:D012128
1515 366-370 Disease denotes ARDS MESH:D012128
1516 375-390 Disease denotes Muscle weakness MESH:D018908
1517 542-556 Disease denotes Muscle atrophy MESH:D009133
1518 583-599 Disease denotes steroid myopathy MESH:D009135
1519 603-628 Disease denotes critical illness myopathy MESH:D016638
1520 670-678 Disease denotes necrosis MESH:D009336
1521 746-759 Disease denotes muscle damage MESH:D009135
1533 980-988 Species denotes SARS-CoV Tax:694009
1534 1028-1036 Species denotes patients Tax:9606
1535 1042-1050 Species denotes MERS-CoV Tax:1335626
1536 1092-1100 Species denotes SARS-CoV Tax:694009
1537 1196-1204 Species denotes SARS-CoV Tax:694009
1538 928-936 Disease denotes Myositis MESH:D009220
1539 941-955 Disease denotes muscle atrophy MESH:D009133
1540 998-1013 Disease denotes Muscle weakness MESH:D018908
1541 1116-1124 Disease denotes myopathy MESH:D009135
1542 1174-1181 Disease denotes atrophy MESH:D001284
1543 1233-1251 Disease denotes MERS-CoV infection MESH:D018352
1563 1880-1882 Gene denotes CK Gene:51727
1564 1652-1654 Gene denotes CK Gene:51727
1565 1382-1390 Species denotes patients Tax:9606
1566 1506-1514 Species denotes patients Tax:9606
1567 1535-1543 Species denotes Patients Tax:9606
1568 1681-1689 Species denotes patients Tax:9606
1569 1721-1729 Species denotes patients Tax:9606
1570 1824-1832 Species denotes patients Tax:9606
1571 1451-1461 Chemical denotes creatinine MESH:D003404
1572 1304-1311 Disease denotes Myalgia MESH:D063806
1573 1351-1359 Disease denotes COVID-19 MESH:C000657245
1574 1360-1369 Disease denotes infection MESH:D007239
1575 1399-1410 Disease denotes muscle pain MESH:D063806
1576 1559-1567 Disease denotes COVID-19 MESH:C000657245
1577 1572-1584 Disease denotes muscle aches MESH:D063806
1578 1788-1802 Disease denotes Rhabdomyolosis
1579 1838-1846 Disease denotes COVID-19 MESH:C000657245
1588 2022-2030 Species denotes patients Tax:9606
1589 2318-2326 Species denotes patients Tax:9606
1590 1938-1946 Disease denotes COVID-19 MESH:C000657245
1591 2080-2097 Disease denotes erythematous rash MESH:D005076
1592 2110-2119 Disease denotes urticaria MESH:D014581
1593 2204-2212 Disease denotes pruritis MESH:D011537
1594 2332-2340 Disease denotes COVID-19 MESH:C000657245
1595 2420-2428 Disease denotes COVID-19 MESH:C000657245
1721 1295-1303 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32620220-12682352-2074208 191-193 12682352 denotes 10
32620220-16461478-2074209 196-198 16461478 denotes 34
32620220-15742856-2074210 201-204 15742856 denotes 117
32620220-23916548-2074211 206-209 23916548 denotes 118
32620220-16009768-2074212 211-214 16009768 denotes 119
32620220-15742856-2074213 371-374 15742856 denotes 117
32620220-16009768-2074214 538-541 16009768 denotes 119
32620220-16009768-2074215 629-632 16009768 denotes 119
32620220-16009768-2074216 807-810 16009768 denotes 119
32620220-28858401-2074217 989-991 28858401 denotes 61
32620220-26256957-2074218 994-997 26256957 denotes 120
32620220-28748673-2074219 1061-1064 28748673 denotes 114
32620220-28858401-2074220 1182-1184 28858401 denotes 61
32620220-31986264-2074221 1515-1517 31986264 denotes 22
32620220-12921602-2074222 1520-1522 12921602 denotes 41
32620220-32007143-2074223 1525-1528 32007143 denotes 106
32620220-32205284-2074224 1531-1534 32205284 denotes 122
32620220-32205284-2074225 1641-1644 32205284 denotes 122