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PMC:7212949 / 45587-46647 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T260 118-124 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T261 834-840 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T262 852-857 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T263 917-929 Body_part denotes Leydig cells http://purl.org/sig/ont/fma/fma72297
T264 924-929 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T265 934-954 Body_part denotes seminiferous tubules http://purl.org/sig/ont/fma/fma76513

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T150 118-124 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T151 834-840 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T152 852-857 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T323 27-35 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T324 112-131 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T325 125-131 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T326 279-290 Disease denotes proteinuria http://purl.obolibrary.org/obo/MONDO_0003634
T327 498-510 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T328 593-599 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T329 792-800 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T330 1007-1013 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T331 1038-1046 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T332 1047-1056 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T460 118-124 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T461 118-124 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T462 118-124 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T463 187-188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T464 337-339 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T465 377-379 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T466 475-481 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T467 773-775 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T468 801-806 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T469 807-810 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T470 917-929 http://purl.obolibrary.org/obo/CL_0000178 denotes Leydig cells
T471 934-954 http://purl.obolibrary.org/obo/UBERON_0001343 denotes seminiferous tubules
T472 1021-1022 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T169 351-355 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T170 360-370 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T57 415-419 http://purl.obolibrary.org/obo/GO_0005006 denotes eGFR
T58 498-510 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T261 112-131 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T262 264-275 Phenotype denotes albuminuria http://purl.obolibrary.org/obo/HP_0012592
T263 279-290 Phenotype denotes proteinuria http://purl.obolibrary.org/obo/HP_0000093
T264 324-333 Phenotype denotes hematuria http://purl.obolibrary.org/obo/HP_0000790
T265 488-493 Phenotype denotes edema http://purl.obolibrary.org/obo/HP_0000969

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T474 0-238 Sentence denotes Acute renal dysfunction in COVID-19 at the time of presentation is not uncommon.92 , 104 , 105 The incidence of acute kidney injury either at presentation or later is as high as 15% with a high mortality rate of 60-90%106 , 107 (Table 4).
T475 239-1060 Sentence denotes Other researchers report albuminuria or proteinuria on admission in 44-63% patients, hematuria in 27%, elevated urea and creatinine in 13-27% and 14-19%, respectively, and low eGFR in 13%.104 , 105 There may also be imaging evidence of active renal edema and inflammation.104 Since renal dysfunction is early, an immunopathology response or direct viral injury may be contributing along with other systemic factors.20 , 92 Similar to other novel CoVs, renal involvement, acute or chronic, tends to associate with an adverse prognosis.22 , 105 , 107 The COVID-19 virus has been detected in renal tissue and in the urine.39 , 70 , 108 Due to the presence of ACE2 receptors in the Leydig cells and seminiferous tubules, it is also reasonable to speculate that testicular injury may be a consequence of COVID-19 infection.109

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1204 35-39 UBERON:0002103 denotes at
T1205 76-82 UBERON:0001456 denotes mon.92
T1206 105-117 UBERON:0001016 denotes nce of acute
T1207 203-213 UBERON:0001016 denotes rate of 6
T1208 374-381 UBERON:0002107 denotes 13-27%
T1209 386-391 UBERON:0002113 denotes 4-19%
T1210 441-449 SP_10 denotes e may al
T1211 451-459 SP_9 denotes be imag
T1212 464-472 SP_7 denotes vidence
T1213 479-484 SP_10 denotes ve re
T1214 774-778 UBERON:0002101 denotes 2 ,
T1215 858-870 UBERON:0001016 denotes 39 , 70 , 10
T1216 1043-1047 UBERON:0000978 denotes -19

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1134 895-899 Gene denotes ACE2 Gene:59272
1135 415-419 Gene denotes eGFR Gene:1956
1136 314-322 Species denotes patients Tax:9606
1137 685-689 Species denotes CoVs Tax:11118
1138 792-806 Species denotes COVID-19 virus Tax:2697049
1139 351-355 Chemical denotes urea MESH:D014508
1140 360-370 Chemical denotes creatinine MESH:D003404
1141 0-23 Disease denotes Acute renal dysfunction MESH:D058186
1142 27-35 Disease denotes COVID-19 MESH:C000657245
1143 112-131 Disease denotes acute kidney injury MESH:D058186
1144 194-203 Disease denotes mortality MESH:D003643
1145 264-275 Disease denotes albuminuria MESH:D000419
1146 279-290 Disease denotes proteinuria MESH:D011507
1147 324-333 Disease denotes hematuria MESH:D006417
1148 475-493 Disease denotes active renal edema MESH:D004487
1149 498-510 Disease denotes inflammation MESH:D007249
1150 521-538 Disease denotes renal dysfunction MESH:D007674
1151 587-599 Disease denotes viral injury
1152 691-708 Disease denotes renal involvement MESH:D007674
1153 996-1013 Disease denotes testicular injury MESH:D013733
1154 1038-1046 Disease denotes COVID-19 MESH:C000657245
1155 1047-1056 Disease denotes infection MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32620220-32204907-2074179 80-82 32204907 denotes 92
32620220-32247631-2074180 91-94 32247631 denotes 105
32620220-32007143-2074181 218-221 32007143 denotes 106
32620220-32171076-2074182 224-227 32171076 denotes 107
32620220-32247631-2074183 433-436 32247631 denotes 105
32620220-32204907-2074184 659-661 32204907 denotes 92
32620220-31986264-2074185 773-775 31986264 denotes 22
32620220-32247631-2074186 778-781 32247631 denotes 105
32620220-32171076-2074187 784-787 32171076 denotes 107
32620220-15141376-2074188 858-860 15141376 denotes 39
32620220-12781535-2074189 863-865 12781535 denotes 70