PMC:7212949 / 42-917
Annnotations
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 47-55 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 144-154 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T3 | 184-192 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T4 | 349-357 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T5 | 374-383 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T6 | 510-519 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T7 | 525-533 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T8 | 550-583 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T9 | 597-605 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T10 | 688-696 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T11 | 774-783 | Disease | denotes | hepatitis | http://purl.obolibrary.org/obo/MONDO_0002251 |
| T12 | 785-804 | Disease | denotes | acute renal failure | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T13 | 791-804 | Disease | denotes | renal failure | http://purl.obolibrary.org/obo/MONDO_0001106 |
| T14 | 806-818 | Disease | denotes | encephalitis | http://purl.obolibrary.org/obo/MONDO_0019956 |
| T15 | 820-828 | Disease | denotes | myositis | http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167 |
| T17 | 833-848 | Disease | denotes | gastroenteritis | http://purl.obolibrary.org/obo/MONDO_0002269 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 194-197 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T3 | 253-256 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T4 | 365-366 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 374-383 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T2 | 401-406 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T3 | 408-413 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T4 | 418-437 | Phenotype | denotes | shortness of breath | http://purl.obolibrary.org/obo/HP_0002098 |
| T5 | 510-519 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T6 | 774-783 | Phenotype | denotes | hepatitis | http://purl.obolibrary.org/obo/HP_0012115 |
| T7 | 785-804 | Phenotype | denotes | acute renal failure | http://purl.obolibrary.org/obo/HP_0001919 |
| T8 | 806-818 | Phenotype | denotes | encephalitis | http://purl.obolibrary.org/obo/HP_0002383 |
| T9 | 820-828 | Phenotype | denotes | myositis | http://purl.obolibrary.org/obo/HP_0100614 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 73-81 | Sentence | denotes | Abstract |
| T3 | 82-221 | Sentence | denotes | Since December 2019, the global pandemic caused by the highly infectious novel coronavirus 2019-nCoV (COVID-19) has been rapidly spreading. |
| T4 | 222-438 | Sentence | denotes | As of April 2020, the outbreak has spread to over 210 countries, with over 2,400,000 confirmed cases and over 170,000 deaths.1 COVID-19 causes a severe pneumonia characterized by fever, cough and shortness of breath. |
| T5 | 439-667 | Sentence | denotes | Similar coronavirus outbreaks have occurred in the past causing severe pneumonia like COVID-19, most recently, severe acute respiratory syndrome coronavirus (SARS-CoV) and middle east respiratory syndrome coronavirus (MERS-CoV). |
| T6 | 668-849 | Sentence | denotes | However, over time, SARS-CoV and MERS-CoV were shown to cause extrapulmonary signs and symptoms including hepatitis, acute renal failure, encephalitis, myositis and gastroenteritis. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 8-21 | NCBITaxon:11118 | denotes | Coronaviruses |
| T2 | 47-55 | SP_7 | denotes | COVID-19 |
| T3 | 161-172 | NCBITaxon:11118 | denotes | coronavirus |
| T4 | 173-182 | SP_7 | denotes | 2019-nCoV |
| T5 | 184-192 | SP_7 | denotes | COVID-19 |
| T6 | 340-346 | GO:0016265 | denotes | deaths |
| T7 | 349-357 | SP_7 | denotes | COVID-19 |
| T8 | 447-458 | NCBITaxon:11118 | denotes | coronavirus |
| T9 | 525-533 | SP_7 | denotes | COVID-19 |
| T10 | 550-562 | SP_10 | denotes | severe acute |
| T11 | 563-574 | SP_10;UBERON:0001004 | denotes | respiratory |
| T12 | 575-595 | SP_10 | denotes | syndrome coronavirus |
| T13 | 597-605 | SP_10 | denotes | SARS-CoV |
| T14 | 611-622 | SP_9 | denotes | middle east |
| T15 | 623-634 | SP_9;UBERON:0001004 | denotes | respiratory |
| T16 | 635-655 | SP_9 | denotes | syndrome coronavirus |
| T17 | 657-665 | SP_9 | denotes | MERS-CoV |
| T18 | 688-696 | SP_10 | denotes | SARS-CoV |
| T19 | 701-709 | SP_9 | denotes | MERS-CoV |
| T20 | 730-744 | UBERON:0000922 | denotes | extrapulmonary |
| T21 | 791-796 | UBERON:0002113 | denotes | renal |
| T74645 | 8-21 | NCBITaxon:11118 | denotes | Coronaviruses |
| T73170 | 47-55 | SP_7 | denotes | COVID-19 |
| T55663 | 161-172 | NCBITaxon:11118 | denotes | coronavirus |
| T78143 | 173-182 | SP_7 | denotes | 2019-nCoV |
| T62393 | 184-192 | SP_7 | denotes | COVID-19 |
| T61863 | 340-346 | GO:0016265 | denotes | deaths |
| T96894 | 349-357 | SP_7 | denotes | COVID-19 |
| T54545 | 447-458 | NCBITaxon:11118 | denotes | coronavirus |
| T38951 | 525-533 | SP_7 | denotes | COVID-19 |
| T88744 | 550-562 | SP_10 | denotes | severe acute |
| T67847 | 563-574 | SP_10;UBERON:0001004 | denotes | respiratory |
| T23325 | 575-595 | SP_10 | denotes | syndrome coronavirus |
| T78542 | 597-605 | SP_10 | denotes | SARS-CoV |
| T94267 | 611-622 | SP_9 | denotes | middle east |
| T27389 | 623-634 | SP_9;UBERON:0001004 | denotes | respiratory |
| T76373 | 635-655 | SP_9 | denotes | syndrome coronavirus |
| T55951 | 657-665 | SP_9 | denotes | MERS-CoV |
| T6936 | 688-696 | SP_10 | denotes | SARS-CoV |
| T69918 | 701-709 | SP_9 | denotes | MERS-CoV |
| T87705 | 730-744 | UBERON:0000922 | denotes | extrapulmonary |
| T62718 | 791-796 | UBERON:0002113 | denotes | renal |
| T399 | 6-14 | UBERON:0001621 | denotes | l Corona |
| T400 | 41-53 | GO:0050817 | denotes | eadly COVID- |
| T401 | 147-155 | SP_10 | denotes | ectious |
| T402 | 169-177 | SP_10 | denotes | rus 2019 |
| T403 | 296-304 | SP_10 | denotes | 2,400,0 |
| T404 | 321-326 | UBERON:0002107 | denotes | s and |
| T405 | 466-470 | G_3;PG_10;PR:000003622 | denotes | ks h |
| T406 | 503-510 | CL:0000182;UBERON:0002107 | denotes | severe |
| T407 | 511-522 | UBERON:0001986;CL:0000115 | denotes | neumonia li |
| T408 | 523-528 | CL:0000115 | denotes | e COV |
| T409 | 551-559 | SP_10 | denotes | evere ac |
| T410 | 591-596 | NCBITaxon:10239 | denotes | irus |
| T411 | 614-621 | UBERON:0002107 | denotes | dle eas |
| T412 | 622-634 | UBERON:0008987 | denotes | respiratory |
| T413 | 679-683 | PR:000001393 | denotes | er t |
| T414 | 688-693 | PR:000001471 | denotes | SARS- |
| T415 | 711-719 | SP_10 | denotes | ere show |
| T416 | 779-786 | UBERON:0002107;CL:0000182 | denotes | itis, a |
| T417 | 787-791 | CL:0000182;GO:0007049 | denotes | ute |
| T418 | 803-813 | GO:0007049 | denotes | e, encepha |
| T419 | 837-844 | UBERON:0002107 | denotes | roenter |
| T420 | 857-866 | GO:0006915 | denotes | ly, spora |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 2 | 2-21 | Species | denotes | Novel Coronaviruses | Tax:2697049 |
| 3 | 47-55 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 35 | 155-172 | Species | denotes | novel coronavirus | Tax:2697049 |
| 36 | 173-182 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 37 | 447-458 | Species | denotes | coronavirus | Tax:11118 |
| 38 | 550-595 | Species | denotes | severe acute respiratory syndrome coronavirus | Tax:694009 |
| 39 | 597-605 | Species | denotes | SARS-CoV | Tax:694009 |
| 40 | 611-666 | Species | denotes | middle east respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
| 41 | 688-696 | Species | denotes | SARS-CoV | Tax:694009 |
| 42 | 701-709 | Species | denotes | MERS-CoV | Tax:1335626 |
| 49 | 184-192 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 50 | 340-346 | Disease | denotes | deaths | MESH:D003643 |
| 51 | 349-357 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 52 | 374-383 | Disease | denotes | pneumonia | MESH:D011014 |
| 53 | 401-406 | Disease | denotes | fever | MESH:D005334 |
| 54 | 408-413 | Disease | denotes | cough | MESH:D003371 |
| 55 | 418-437 | Disease | denotes | shortness of breath | MESH:D004417 |
| 56 | 510-519 | Disease | denotes | pneumonia | MESH:D011014 |
| 57 | 525-533 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 58 | 774-783 | Disease | denotes | hepatitis | MESH:D056486 |
| 59 | 785-804 | Disease | denotes | acute renal failure | MESH:D058186 |
| 60 | 806-818 | Disease | denotes | encephalitis | MESH:D004660 |
| 61 | 820-848 | Disease | denotes | myositis and gastroenteritis | MESH:D005759 |