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PMC:7212949 / 239-1060 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 152-160 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 177-186 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 313-322 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 328-336 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 353-386 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 400-408 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 491-499 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 577-586 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T12 588-607 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T13 594-607 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T14 609-621 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T15 623-631 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T17 636-651 Disease denotes gastroenteritis http://purl.obolibrary.org/obo/MONDO_0002269
T18 684-692 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 56-59 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 168-169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 177-186 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 204-209 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 211-216 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 221-240 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T5 313-322 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 577-586 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T7 588-607 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T8 609-621 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T9 623-631 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 25-241 Sentence denotes As of April 2020, the outbreak has spread to over 210 countries, with over 2,400,000 confirmed cases and over 170,000 deaths.1 COVID-19 causes a severe pneumonia characterized by fever, cough and shortness of breath.
T5 242-470 Sentence denotes Similar coronavirus outbreaks have occurred in the past causing severe pneumonia like COVID-19, most recently, severe acute respiratory syndrome coronavirus (SARS-CoV) and middle east respiratory syndrome coronavirus (MERS-CoV).
T6 471-652 Sentence denotes However, over time, SARS-CoV and MERS-CoV were shown to cause extrapulmonary signs and symptoms including hepatitis, acute renal failure, encephalitis, myositis and gastroenteritis.
T7 653-738 Sentence denotes Similarly, sporadic reports of COVID-19 related extrapulmonary manifestations emerge.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T6 143-149 GO:0016265 denotes deaths
T7 152-160 SP_7 denotes COVID-19
T8 250-261 NCBITaxon:11118 denotes coronavirus
T9 328-336 SP_7 denotes COVID-19
T10 353-365 SP_10 denotes severe acute
T11 366-377 SP_10;UBERON:0001004 denotes respiratory
T12 378-398 SP_10 denotes syndrome coronavirus
T13 400-408 SP_10 denotes SARS-CoV
T14 414-425 SP_9 denotes middle east
T15 426-437 SP_9;UBERON:0001004 denotes respiratory
T16 438-458 SP_9 denotes syndrome coronavirus
T17 460-468 SP_9 denotes MERS-CoV
T18 491-499 SP_10 denotes SARS-CoV
T19 504-512 SP_9 denotes MERS-CoV
T20 533-547 UBERON:0000922 denotes extrapulmonary
T21 594-599 UBERON:0002113 denotes renal
T22 684-692 SP_7 denotes COVID-19
T23 701-715 UBERON:0000922 denotes extrapulmonary
T24 795-805 UBERON:0000062 denotes multiorgan
T61863 143-149 GO:0016265 denotes deaths
T96894 152-160 SP_7 denotes COVID-19
T54545 250-261 NCBITaxon:11118 denotes coronavirus
T38951 328-336 SP_7 denotes COVID-19
T88744 353-365 SP_10 denotes severe acute
T67847 366-377 SP_10;UBERON:0001004 denotes respiratory
T23325 378-398 SP_10 denotes syndrome coronavirus
T78542 400-408 SP_10 denotes SARS-CoV
T94267 414-425 SP_9 denotes middle east
T27389 426-437 SP_9;UBERON:0001004 denotes respiratory
T76373 438-458 SP_9 denotes syndrome coronavirus
T55951 460-468 SP_9 denotes MERS-CoV
T6936 491-499 SP_10 denotes SARS-CoV
T69918 504-512 SP_9 denotes MERS-CoV
T87705 533-547 UBERON:0000922 denotes extrapulmonary
T62718 594-599 UBERON:0002113 denotes renal
T8411 684-692 SP_7 denotes COVID-19
T97604 701-715 UBERON:0000922 denotes extrapulmonary
T65109 795-805 UBERON:0000062 denotes multiorgan
T403 99-107 SP_10 denotes 2,400,0
T404 124-129 UBERON:0002107 denotes s and
T405 269-273 G_3;PG_10;PR:000003622 denotes ks h
T406 306-313 CL:0000182;UBERON:0002107 denotes severe
T407 314-325 UBERON:0001986;CL:0000115 denotes neumonia li
T408 326-331 CL:0000115 denotes e COV
T409 354-362 SP_10 denotes evere ac
T410 394-399 NCBITaxon:10239 denotes irus
T411 417-424 UBERON:0002107 denotes dle eas
T412 425-437 UBERON:0008987 denotes respiratory
T413 482-486 PR:000001393 denotes er t
T414 491-496 PR:000001471 denotes SARS-
T415 514-522 SP_10 denotes ere show
T416 582-589 UBERON:0002107;CL:0000182 denotes itis, a
T417 590-594 CL:0000182;GO:0007049 denotes ute
T418 606-616 GO:0007049 denotes e, encepha
T419 640-647 UBERON:0002107 denotes roenter
T420 660-669 GO:0006915 denotes ly, spora
T421 671-685 GO:0071850 denotes c reports of C
T422 691-701 CL:0000771 denotes 9 related
T423 726-737 CL:0000182 denotes ions emerge
T424 756-763 UBERON:0002107 denotes ere is

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
37 250-261 Species denotes coronavirus Tax:11118
38 353-398 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
39 400-408 Species denotes SARS-CoV Tax:694009
40 414-469 Species denotes middle east respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
41 491-499 Species denotes SARS-CoV Tax:694009
42 504-512 Species denotes MERS-CoV Tax:1335626
50 143-149 Disease denotes deaths MESH:D003643
51 152-160 Disease denotes COVID-19 MESH:C000657245
52 177-186 Disease denotes pneumonia MESH:D011014
53 204-209 Disease denotes fever MESH:D005334
54 211-216 Disease denotes cough MESH:D003371
55 221-240 Disease denotes shortness of breath MESH:D004417
56 313-322 Disease denotes pneumonia MESH:D011014
57 328-336 Disease denotes COVID-19 MESH:C000657245
58 577-586 Disease denotes hepatitis MESH:D056486
59 588-607 Disease denotes acute renal failure MESH:D058186
60 609-621 Disease denotes encephalitis MESH:D004660
61 623-651 Disease denotes myositis and gastroenteritis MESH:D005759
62 684-692 Disease denotes COVID-19 MESH:C000657245