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PMC:7212949 / 22124-24029 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T111 396-401 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T112 429-434 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T113 566-571 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T114 755-760 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T115 771-776 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T116 1154-1165 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T117 1197-1209 Body_part denotes Muscle fiber http://purl.org/sig/ont/fma/fma67328
T118 1683-1688 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T63 396-401 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T64 429-434 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T65 566-571 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T66 755-760 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T67 771-776 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T68 1143-1150 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T69 1683-1688 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T165 0-4 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T166 449-452 Disease denotes CHF http://purl.obolibrary.org/obo/MONDO_0005009
T167 491-494 Disease denotes CHF http://purl.obolibrary.org/obo/MONDO_0005009
T168 510-531 Disease denotes Sudden cardiac arrest http://purl.obolibrary.org/obo/MONDO_0007264
T169 517-531 Disease denotes cardiac arrest http://purl.obolibrary.org/obo/MONDO_0000745
T170 540-542 Disease denotes MI http://purl.obolibrary.org/obo/MONDO_0005068
T171 547-557 Disease denotes arrhythmia http://purl.obolibrary.org/obo/MONDO_0007263
T172 755-768 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T173 914-916 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T174 998-1000 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T175 1004-1006 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T176 1309-1317 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T177 1448-1452 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T178 1552-1558 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T179 1716-1718 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T180 1733-1741 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T182 1883-1893 Disease denotes arrhythmia http://purl.obolibrary.org/obo/MONDO_0007263

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T189 125-127 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T190 125-127 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T191 181-184 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T192 396-401 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T193 429-434 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T194 566-571 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T195 755-760 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T196 755-760 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T197 755-760 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T198 755-760 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T199 771-776 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T200 879-881 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T201 891-893 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T202 928-930 http://purl.obolibrary.org/obo/CLO_0003622 denotes Hb
T203 992-993 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T204 1088-1089 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T205 1092-1093 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T206 1096-1097 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T207 1143-1150 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T208 1197-1203 http://purl.obolibrary.org/obo/UBERON_0001630 denotes Muscle
T209 1197-1203 http://purl.obolibrary.org/obo/UBERON_0005090 denotes Muscle
T210 1197-1203 http://www.ebi.ac.uk/efo/EFO_0000801 denotes Muscle
T211 1197-1203 http://www.ebi.ac.uk/efo/EFO_0001949 denotes Muscle
T212 1218-1219 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T213 1683-1688 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T214 1683-1688 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T215 1683-1688 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T216 1683-1688 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T217 1694-1699 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T218 1790-1792 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53 125-127 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T54 540-542 Chemical denotes MI http://purl.obolibrary.org/obo/CHEBI_53620|http://purl.obolibrary.org/obo/CHEBI_74704
T56 616-618 Chemical denotes BP http://purl.obolibrary.org/obo/CHEBI_29865
T57 847-849 Chemical denotes Ca http://purl.obolibrary.org/obo/CHEBI_22984
T58 873-875 Chemical denotes Mg http://purl.obolibrary.org/obo/CHEBI_25107

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T21 1028-1032 http://purl.obolibrary.org/obo/GO_0004111 denotes CKMB
T22 1210-1215 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T137 396-406 Phenotype denotes Chest pain http://purl.obolibrary.org/obo/HP_0100749
T138 429-439 Phenotype denotes chest pain http://purl.obolibrary.org/obo/HP_0100749
T139 449-452 Phenotype denotes CHF http://purl.obolibrary.org/obo/HP_0001635
T140 491-494 Phenotype denotes CHF http://purl.obolibrary.org/obo/HP_0001635
T141 510-531 Phenotype denotes Sudden cardiac arrest http://purl.obolibrary.org/obo/HP_0031628
T142 547-557 Phenotype denotes arrhythmia http://purl.obolibrary.org/obo/HP_0011675
T143 566-576 Phenotype denotes Chest pain http://purl.obolibrary.org/obo/HP_0100749
T144 721-733 Phenotype denotes cardiomegaly http://purl.obolibrary.org/obo/HP_0001640
T145 755-768 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T146 795-807 Phenotype denotes Palpitations http://purl.obolibrary.org/obo/HP_0001962
T147 1119-1124 Phenotype denotes edema http://purl.obolibrary.org/obo/HP_0000969
T148 1487-1496 Phenotype denotes Hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T149 1733-1741 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614
T150 1835-1846 Phenotype denotes Tachycardia http://purl.obolibrary.org/obo/HP_0001649
T151 1875-1893 Phenotype denotes Cardiac arrhythmia http://purl.obolibrary.org/obo/HP_0011675

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T225 0-56 Sentence denotes SARS (only studies with large study population included)
T226 57-375 Sentence denotes Study Booth et al (2003)N = 144, confirmed casesRetrospective study Li et al (2003)N = 46, confirmed casesProspective study Pan et al (2003)N = 15, confirmed casesRetrospective study Ding et al (2004)N = 8 (4 confirmed cases, 4 control)Clinicopathologic study Yu et al (2006)N = 121, confirmed casesRetrospective study
T227 376-612 Sentence denotes Clinical features • Chest pain (10%)• ↑HR (46%) • No chest pain or overt CHF on admission• ↓HR (non-ICU) ↑HR (ICU)•CHF exacerbation • Sudden cardiac arrest (100%)• MI and arrhythmia (33%) • Chest pain • ↑HR (71.9%) (62.8%, 45.4%, 35.5%)
T228 613-707 Sentence denotes • ↓BP (50.4%) (28.1%, 21.5%, 14.8% during the first, second, third week)↓HR, transient (14.9%)
T229 708-768 Sentence denotes • Reversible cardiomegaly (10.7%), no clinical heart failure
T230 769-792 Sentence denotes • Chest discomfort (7%)
T231 793-812 Sentence denotes • Palpitations (4%)
T232 813-857 Sentence denotes Key findings on investigations • ↓Ca++ (60%)
T233 858-869 Sentence denotes • ↓K+ (26%)
T234 870-883 Sentence denotes • ↓Mg++ (18%)
T235 884-895 Sentence denotes • ↓P+ (27%)
T236 896-916 Sentence denotes • ↑ LDH (87%) • ↑ CK
T237 917-924 Sentence denotes • ↑ LDH
T238 925-930 Sentence denotes • ↓Hb
T239 931-942 Sentence denotes • EKG: RBBB
T240 943-1000 Sentence denotes • Echo: ↓LVEF • Abnormal cardiac enzymes (66%) N/A • ↑ CK
T241 1001-1032 Sentence denotes • ↑CK (26%) without TnI or CKMB
T242 1033-1040 Sentence denotes • ↑ LDH
T243 1041-1065 Sentence denotes • CXR or CT abnormality:
T244 1066-1070 Sentence denotes 100%
T245 1071-1124 Sentence denotes Histopathology N/A N/A N/A • Myocardial stromal edema
T246 1125-1165 Sentence denotes • Infiltration of vessels by lymphocytes
T247 1166-1194 Sentence denotes • Focal hyaline degeneration
T248 1195-1219 Sentence denotes • Muscle fiber lysis N/A
T249 1220-1270 Sentence denotes Key study findings and message • 20% ICU admission
T250 1271-1306 Sentence denotes • 6.5% Case fatality rate (21 days)
T251 1307-1525 Sentence denotes • Diabetes and other comorbidities independently associated with poor prognosis Possibly reversible subclinical diastolic impairment seen in SARS patients Proposed causes of SCD:• Hypoxemia leading to myocardial strain
T252 1526-1558 Sentence denotes • Direct viral myocardial injury
T253 1559-1599 Sentence denotes • Stress aggravates pre-existing disease
T254 1600-1767 Sentence denotes • Sympathetic response causing electrical myocardial instability ACE2 expressed in heart, but virus not detected • ↑CK likely due to myositis as cardiac enzymes normal
T255 1768-1787 Sentence denotes • 15% ICU admission
T256 1788-1832 Sentence denotes • 18 (5) days mean duration of hospital stay
T257 1833-1872 Sentence denotes • Tachycardia persists during follow up
T258 1873-1905 Sentence denotes • Cardiac arrhythmia is uncommon

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1726 240-243 CHEBI:85129;DG_29;CHEBI:85129 denotes Din
T1727 314-325 GO:0007567 denotes dy Yu et al
T1729 472-479 GO:0007565 denotes non-ICU
T1730 543-546 UBERON:0002113 denotes and
T1732 808-835 GO:0007565 denotes (4%) Key findings on invest
T1733 1047-1080 GO:0007567 denotes or CT abnormality: 100% Histopath
T1735 1279-1291 GO:0042571;GO:0016064 denotes ase fatality
T1736 1292-1296 GO:0016064 denotes rate
T1737 1396-1414 GO:0007565 denotes reversible subclin
T1738 1552-1578 GO:0016265 denotes injury • Stress aggravates
T1740 1733-1767 UBERON:0001987 denotes myositis as cardiac enzymes normal
T808 94-102 SP_10 denotes irmed ca
T809 104-112 SP_9 denotes sRetrosp
T810 117-125 SP_7 denotes e study
T811 132-137 SP_10 denotes l (20
T812 1024-1026 UBERON:0005409 denotes o
T813 1221-1229 UBERON:0004908 denotes ey study
T814 1461-1463 CHEBI:29103;CHEBI:29103 denotes P
T815 1479-1484 UBERON:0001988 denotes f SCD
T816 1523-1525 CHEBI:29103;CHEBI:29103 denotes in
T817 1540-1545 UBERON:0001988 denotes myoc
T818 1556-1561 NCBITaxon:10239 denotes ry •
T819 1577-1582 UBERON:0001988 denotes s pre
T820 1631-1633 CHEBI:29103;CHEBI:29103 denotes el
T821 1738-1743 NCBITaxon:10239 denotes tis a
T822 1766-1775 UBERON:0000483;CL:0000066 denotes l • 15% I
T823 1776-1781 CL:0000066 denotes U adm
T824 1785-1790 UBERON:0000160 denotes on •
T825 1817-1828 GO:0005902 denotes f hospital
T826 1837-1842 NCBITaxon:10239;GO:0006260 denotes chyca
T827 1843-1854 GO:0006260 denotes dia persist
T828 1858-1868 UBERON:0000160 denotes ring follo
T829 1885-1890 NCBITaxon:10239 denotes rhyth