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PMC:7212949 / 124-1631 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 62-72 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T3 102-110 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 267-275 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 292-301 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 428-437 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 443-451 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 468-501 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 515-523 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 606-614 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 692-701 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T12 703-722 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T13 709-722 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T14 724-736 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T15 738-746 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T17 751-766 Disease denotes gastroenteritis http://purl.obolibrary.org/obo/MONDO_0002269
T18 799-807 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 939-947 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 1086-1094 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 1176-1184 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1386-1394 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 1409-1417 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 112-115 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 171-174 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 283-284 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1124-1132 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humanity
T6 1133-1136 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 1424-1425 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1437-1442 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 292-301 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 319-324 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 326-331 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 336-355 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T5 428-437 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 692-701 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T7 703-722 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T8 724-736 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T9 738-746 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-139 Sentence denotes Since December 2019, the global pandemic caused by the highly infectious novel coronavirus 2019-nCoV (COVID-19) has been rapidly spreading.
T4 140-356 Sentence denotes As of April 2020, the outbreak has spread to over 210 countries, with over 2,400,000 confirmed cases and over 170,000 deaths.1 COVID-19 causes a severe pneumonia characterized by fever, cough and shortness of breath.
T5 357-585 Sentence denotes Similar coronavirus outbreaks have occurred in the past causing severe pneumonia like COVID-19, most recently, severe acute respiratory syndrome coronavirus (SARS-CoV) and middle east respiratory syndrome coronavirus (MERS-CoV).
T6 586-767 Sentence denotes However, over time, SARS-CoV and MERS-CoV were shown to cause extrapulmonary signs and symptoms including hepatitis, acute renal failure, encephalitis, myositis and gastroenteritis.
T7 768-853 Sentence denotes Similarly, sporadic reports of COVID-19 related extrapulmonary manifestations emerge.
T8 854-1063 Sentence denotes Unfortunately, there is no comprehensive summary of the multiorgan manifestations of COVID-19, making it difficult for clinicians to quickly educate themselves about this highly contagious and deadly pathogen.
T9 1064-1285 Sentence denotes What is more, is that SARS-CoV and MERS-CoV are the closest humanity has come to combating something similar to COVID-19, however, there exists no comparison between the manifestations of any of these novel coronaviruses.
T10 1286-1507 Sentence denotes In this review, we summarize the current knowledge of the manifestations of the novel coronaviruses SARS-CoV, MERS-CoV and COVID-19, with a particular focus on the latter, and highlight their differences and similarities.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T3 79-90 NCBITaxon:11118 denotes coronavirus
T4 91-100 SP_7 denotes 2019-nCoV
T5 102-110 SP_7 denotes COVID-19
T6 258-264 GO:0016265 denotes deaths
T7 267-275 SP_7 denotes COVID-19
T8 365-376 NCBITaxon:11118 denotes coronavirus
T9 443-451 SP_7 denotes COVID-19
T10 468-480 SP_10 denotes severe acute
T11 481-492 SP_10;UBERON:0001004 denotes respiratory
T12 493-513 SP_10 denotes syndrome coronavirus
T13 515-523 SP_10 denotes SARS-CoV
T14 529-540 SP_9 denotes middle east
T15 541-552 SP_9;UBERON:0001004 denotes respiratory
T16 553-573 SP_9 denotes syndrome coronavirus
T17 575-583 SP_9 denotes MERS-CoV
T18 606-614 SP_10 denotes SARS-CoV
T19 619-627 SP_9 denotes MERS-CoV
T20 648-662 UBERON:0000922 denotes extrapulmonary
T21 709-714 UBERON:0002113 denotes renal
T22 799-807 SP_7 denotes COVID-19
T23 816-830 UBERON:0000922 denotes extrapulmonary
T24 910-920 UBERON:0000062 denotes multiorgan
T25 939-947 SP_7 denotes COVID-19
T26 1086-1094 SP_10 denotes SARS-CoV
T27 1099-1107 SP_9 denotes MERS-CoV
T28 1176-1184 SP_7 denotes COVID-19
T29 1271-1284 NCBITaxon:11118 denotes coronaviruses
T30 1372-1385 NCBITaxon:11118 denotes coronaviruses
T31 1386-1394 SP_10 denotes SARS-CoV
T32 1396-1404 SP_9 denotes MERS-CoV
T33 1409-1417 SP_7 denotes COVID-19
T55663 79-90 NCBITaxon:11118 denotes coronavirus
T78143 91-100 SP_7 denotes 2019-nCoV
T62393 102-110 SP_7 denotes COVID-19
T61863 258-264 GO:0016265 denotes deaths
T96894 267-275 SP_7 denotes COVID-19
T54545 365-376 NCBITaxon:11118 denotes coronavirus
T38951 443-451 SP_7 denotes COVID-19
T88744 468-480 SP_10 denotes severe acute
T67847 481-492 SP_10;UBERON:0001004 denotes respiratory
T23325 493-513 SP_10 denotes syndrome coronavirus
T78542 515-523 SP_10 denotes SARS-CoV
T94267 529-540 SP_9 denotes middle east
T27389 541-552 SP_9;UBERON:0001004 denotes respiratory
T76373 553-573 SP_9 denotes syndrome coronavirus
T55951 575-583 SP_9 denotes MERS-CoV
T6936 606-614 SP_10 denotes SARS-CoV
T69918 619-627 SP_9 denotes MERS-CoV
T87705 648-662 UBERON:0000922 denotes extrapulmonary
T62718 709-714 UBERON:0002113 denotes renal
T8411 799-807 SP_7 denotes COVID-19
T97604 816-830 UBERON:0000922 denotes extrapulmonary
T65109 910-920 UBERON:0000062 denotes multiorgan
T96132 939-947 SP_7 denotes COVID-19
T86207 1086-1094 SP_10 denotes SARS-CoV
T25781 1099-1107 SP_9 denotes MERS-CoV
T23679 1176-1184 SP_7 denotes COVID-19
T49691 1271-1284 NCBITaxon:11118 denotes coronaviruses
T45059 1372-1385 NCBITaxon:11118 denotes coronaviruses
T70224 1386-1394 SP_10 denotes SARS-CoV
T13401 1396-1404 SP_9 denotes MERS-CoV
T91497 1409-1417 SP_7 denotes COVID-19
T401 65-73 SP_10 denotes ectious
T402 87-95 SP_10 denotes rus 2019
T403 214-222 SP_10 denotes 2,400,0
T404 239-244 UBERON:0002107 denotes s and
T405 384-388 G_3;PG_10;PR:000003622 denotes ks h
T406 421-428 CL:0000182;UBERON:0002107 denotes severe
T407 429-440 UBERON:0001986;CL:0000115 denotes neumonia li
T408 441-446 CL:0000115 denotes e COV
T409 469-477 SP_10 denotes evere ac
T410 509-514 NCBITaxon:10239 denotes irus
T411 532-539 UBERON:0002107 denotes dle eas
T412 540-552 UBERON:0008987 denotes respiratory
T413 597-601 PR:000001393 denotes er t
T414 606-611 PR:000001471 denotes SARS-
T415 629-637 SP_10 denotes ere show
T416 697-704 UBERON:0002107;CL:0000182 denotes itis, a
T417 705-709 CL:0000182;GO:0007049 denotes ute
T418 721-731 GO:0007049 denotes e, encepha
T419 755-762 UBERON:0002107 denotes roenter
T420 775-784 GO:0006915 denotes ly, spora
T421 786-800 GO:0071850 denotes c reports of C
T422 806-816 CL:0000771 denotes 9 related
T423 841-852 CL:0000182 denotes ions emerge
T424 871-878 UBERON:0002107 denotes ere is
T425 997-1005 SP_10 denotes ucate th
T426 1009-1016 UBERON:0002107 denotes lves ab
T427 1165-1175 UBERON:0001264 denotes similar to
T428 1251-1259 SP_10 denotes any of
T429 1303-1311 SP_10 denotes e summar
T430 1313-1321 SP_9 denotes e the cu
T431 1326-1334 SP_7 denotes knowled
T432 1341-1346 SP_10 denotes he ma

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
35 73-90 Species denotes novel coronavirus Tax:2697049
36 91-100 Species denotes 2019-nCoV Tax:2697049
37 365-376 Species denotes coronavirus Tax:11118
38 468-513 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
39 515-523 Species denotes SARS-CoV Tax:694009
40 529-584 Species denotes middle east respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
41 606-614 Species denotes SARS-CoV Tax:694009
42 619-627 Species denotes MERS-CoV Tax:1335626
43 1086-1094 Species denotes SARS-CoV Tax:694009
44 1099-1107 Species denotes MERS-CoV Tax:1335626
45 1265-1284 Species denotes novel coronaviruses Tax:2697049
46 1366-1385 Species denotes novel coronaviruses Tax:2697049
47 1386-1394 Species denotes SARS-CoV Tax:694009
48 1396-1404 Species denotes MERS-CoV Tax:1335626
49 102-110 Disease denotes COVID-19 MESH:C000657245
50 258-264 Disease denotes deaths MESH:D003643
51 267-275 Disease denotes COVID-19 MESH:C000657245
52 292-301 Disease denotes pneumonia MESH:D011014
53 319-324 Disease denotes fever MESH:D005334
54 326-331 Disease denotes cough MESH:D003371
55 336-355 Disease denotes shortness of breath MESH:D004417
56 428-437 Disease denotes pneumonia MESH:D011014
57 443-451 Disease denotes COVID-19 MESH:C000657245
58 692-701 Disease denotes hepatitis MESH:D056486
59 703-722 Disease denotes acute renal failure MESH:D058186
60 724-736 Disease denotes encephalitis MESH:D004660
61 738-766 Disease denotes myositis and gastroenteritis MESH:D005759
62 799-807 Disease denotes COVID-19 MESH:C000657245
63 939-947 Disease denotes COVID-19 MESH:C000657245
64 1176-1184 Disease denotes COVID-19 MESH:C000657245
65 1409-1417 Disease denotes COVID-19 MESH:C000657245