PMC:7211620 / 6872-7828
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T27 | 165-167 | Body_part | denotes | Ag | http://purl.org/sig/ont/fma/fma61898 |
| T28 | 498-503 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T20 | 498-503 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T56 | 34-56 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T57 | 43-56 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T58 | 75-83 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T59 | 95-99 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T60 | 278-280 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T61 | 411-423 | Disease | denotes | mucormycosis | http://purl.obolibrary.org/obo/MONDO_0019136 |
| T62 | 464-474 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T63 | 537-545 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T64 | 658-666 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T65 | 770-779 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T66 | 860-869 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 15-16 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T62 | 60-61 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63 | 142-143 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T64 | 168-172 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T65 | 240-241 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T66 | 324-325 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T67 | 343-344 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T68 | 498-503 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T69 | 517-518 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T70 | 684-685 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T71 | 780-781 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72 | 843-844 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T73 | 871-873 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T49 | 165-167 | Chemical | denotes | Ag | http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141 |
| T51 | 489-492 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T53 | 952-955 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 106-112 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 0-198 | Sentence | denotes | Here we report a case of putative invasive aspergillosis in a patient with COVID-19 associated ARDS, with growth of Aspergillus fumigatus and a positive Aspergillus-Ag test in endotracheal aspirate. |
| T62 | 199-305 | Sentence | denotes | The patient presented in this report had a two-week history of symptoms before he was admitted to the ICU. |
| T63 | 306-497 | Sentence | denotes | On ICU admission, a CT scan revealed a reversed halo sign that is usually suspicious for the presence of mucormycosis [7] but may also be found in other mold infections, particularly IPA [8]. |
| T64 | 498-571 | Sentence | denotes | Chest CT scans are a valuable tool for COVID-19 diagnosis and management. |
| T65 | 572-737 | Sentence | denotes | Ground-glass opacities with or without consolidations are observed in the majority of COVID-19 cases [9,10] but a reversed halo may be observed in some patients [9]. |
| T66 | 738-956 | Sentence | denotes | Similar to patients with severe influenza a halo or reversed halo sign may be indicative for presence of a pulmonary mold infection [11] and should therefore trigger further diagnostic steps to confirm or rule out IPA. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T35 | 345-363 | Phenotype | denotes | reversed halo sign | http://purl.obolibrary.org/obo/HP_0032983 |
| T36 | 489-492 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T37 | 790-808 | Phenotype | denotes | reversed halo sign | http://purl.obolibrary.org/obo/HP_0032983 |
| T38 | 952-955 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 240 | 62-69 | Species | denotes | patient | Tax:9606 |
| 241 | 116-137 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
| 242 | 203-210 | Species | denotes | patient | Tax:9606 |
| 243 | 724-732 | Species | denotes | patients | Tax:9606 |
| 244 | 749-757 | Species | denotes | patients | Tax:9606 |
| 245 | 153-164 | Species | denotes | Aspergillus | Tax:746128 |
| 246 | 770-779 | Species | denotes | influenza | Tax:11308 |
| 247 | 34-56 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 248 | 75-83 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 249 | 95-99 | Disease | denotes | ARDS | MESH:D012128 |
| 250 | 464-474 | Disease | denotes | infections | MESH:D007239 |
| 251 | 537-545 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 252 | 658-666 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 253 | 845-869 | Disease | denotes | pulmonary mold infection | MESH:D012141 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32395423-31699664-68941091 | 425-426 | 31699664 | denotes | 7 |
| 32395423-22553298-68941092 | 494-495 | 22553298 | denotes | 8 |