PMC:7211620 / 645-1773
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 227-232 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
T2 | 680-703 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 680-703 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
T2 | 686-703 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T10 | 296-306 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
T11 | 381-394 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T12 | 409-418 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T13 | 573-582 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T14 | 602-649 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T15 | 602-635 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T16 | 651-659 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T17 | 686-714 | Disease | denotes | respiratory tract infections | http://purl.obolibrary.org/obo/MONDO_0024355 |
T18 | 726-761 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T19 | 732-761 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T20 | 763-767 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T21 | 802-826 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T22 | 828-836 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T23 | 870-874 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
T24 | 1045-1053 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T25 | 1118-1127 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 227-232 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
T4 | 519-520 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T5 | 680-703 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
T6 | 924-925 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T7 | 396-399 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T9 | 477-480 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T11 | 1078-1081 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 0-15 | Sentence | denotes | 1 Introduction |
T11 | 16-175 | Sentence | denotes | Aspergillus is an opportunistic fungal pathogen that may cause devastating disease in immunocompromised hosts, including those with hematological malignancies. |
T12 | 176-262 | Sentence | denotes | Aspergillus is an air-borne pathogen, bringing the lungs in the frontline for defense. |
T13 | 263-401 | Sentence | denotes | Recently, severe viral pulmonary infections have shown to be associated with an increased risk for invasive pulmonary aspergillosis (IPA). |
T14 | 402-561 | Sentence | denotes | Severe influenza in critically ill patients for example, is complicated by IPA in 7–23% of cases and associated with a case fatality rate of more than 50% [1]. |
T15 | 562-769 | Sentence | denotes | Similar to influenza, the newly emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) may cause severe lower respiratory tract infections leading to acute respiratory distress syndrome (ARDS). |
T16 | 770-900 | Sentence | denotes | The proportion of patients with coronavirus disease 2019 (COVID-19) who develop severe disease with ARDS is considerably high [2]. |
T17 | 901-999 | Sentence | denotes | Consequently, there is a large number of patients in need for intensive care unit (ICU) admission. |
T18 | 1000-1128 | Sentence | denotes | It is not yet known, if patients with severe COVID-19 are at similar risk for IPA development as patients with severe influenza. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T7 | 286-306 | Phenotype | denotes | pulmonary infections | http://purl.obolibrary.org/obo/HP_0006532 |
T8 | 362-394 | Phenotype | denotes | invasive pulmonary aspergillosis | http://purl.obolibrary.org/obo/HP_0020103 |
T9 | 396-399 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T10 | 477-480 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T11 | 680-714 | Phenotype | denotes | lower respiratory tract infections | http://purl.obolibrary.org/obo/HP_0002783 |
T12 | 732-752 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
T13 | 1078-1081 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
61 | 437-445 | Species | denotes | patients | Tax:9606 |
62 | 602-649 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
63 | 651-661 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
64 | 788-796 | Species | denotes | patients | Tax:9606 |
65 | 942-950 | Species | denotes | patients | Tax:9606 |
66 | 1024-1032 | Species | denotes | patients | Tax:9606 |
67 | 1097-1105 | Species | denotes | patients | Tax:9606 |
68 | 16-27 | Species | denotes | Aspergillus | Tax:746128 |
69 | 176-187 | Species | denotes | Aspergillus | Tax:746128 |
70 | 409-418 | Species | denotes | influenza | Tax:11308 |
71 | 573-582 | Species | denotes | influenza | Tax:11308 |
72 | 1118-1127 | Species | denotes | influenza | Tax:11308 |
73 | 162-174 | Disease | denotes | malignancies | MESH:D009369 |
74 | 280-306 | Disease | denotes | viral pulmonary infections | MESH:D001102 |
75 | 362-394 | Disease | denotes | invasive pulmonary aspergillosis | MESH:D055744 |
76 | 422-436 | Disease | denotes | critically ill | MESH:D016638 |
77 | 686-714 | Disease | denotes | respiratory tract infections | MESH:D012141 |
78 | 726-761 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
79 | 763-767 | Disease | denotes | ARDS | MESH:D012128 |
80 | 802-826 | Disease | denotes | coronavirus disease 2019 | MESH:C000657245 |
81 | 828-836 | Disease | denotes | COVID-19 | MESH:C000657245 |
82 | 870-874 | Disease | denotes | ARDS | MESH:D012128 |
83 | 1045-1053 | Disease | denotes | COVID-19 | MESH:C000657245 |