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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 872-877 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 1325-1348 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T3 1986-1993 Body_part denotes insulin http://purl.org/sig/ont/fma/fma83365
T4 2029-2034 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T5 2187-2192 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T6 2214-2218 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 2286-2290 Body_part denotes vein http://purl.org/sig/ont/fma/fma50723
T8 2568-2575 Body_part denotes insulin http://purl.org/sig/ont/fma/fma83365
T9 2766-2782 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T10 2778-2782 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 2833-2840 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 2947-2952 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 3419-3424 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T14 3601-3617 Body_part denotes White blood-cell http://purl.org/sig/ont/fma/fma62852
T15 3613-3617 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 3668-3679 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T17 3739-3752 Body_part denotes interleukin-6 http://purl.org/sig/ont/fma/fma264829
T18 3871-3882 Body_part denotes Lymphocytes http://purl.org/sig/ont/fma/fma62863
T19 4135-4140 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T20 4850-4855 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T21 5936-5941 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T22 6057-6062 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 6110-6123 Body_part denotes lateral chest http://purl.org/sig/ont/fma/fma24817
T24 6242-6247 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T25 6307-6312 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 6515-6519 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T27 7037-7039 Body_part denotes Ag http://purl.org/sig/ont/fma/fma61898
T28 7370-7375 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T29 8380-8385 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T30 8562-8567 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T31 8879-8884 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T32 9063-9068 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 9656-9661 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T34 9677-9682 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T35 10048-10053 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T36 10632-10641 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T37 10660-10673 Body_part denotes T-helper cell http://purl.org/sig/ont/fma/fma70572
T38 10669-10673 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T39 10703-10707 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1325-1348 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 1331-1348 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 2029-2034 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T4 2187-2192 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T5 2281-2290 Body_part denotes deep vein http://purl.obolibrary.org/obo/UBERON_0035552
T6 2286-2290 Body_part denotes vein http://purl.obolibrary.org/obo/UBERON_0001638
T7 2772-2777 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 2947-2952 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 3419-3424 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 3607-3612 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 4135-4140 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 4850-4855 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 5936-5941 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 6057-6062 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 6118-6123 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 6196-6213 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T17 6242-6247 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 6307-6312 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T19 6515-6519 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 7370-7375 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T21 8380-8385 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 8562-8567 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T23 8879-8884 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T24 9063-9068 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T25 9656-9661 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 10048-10053 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 19-32 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T2 46-54 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 131-139 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 162-179 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T5 265-278 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T6 393-401 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 446-459 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T8 526-539 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T9 594-607 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T10 941-951 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T11 1026-1039 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T12 1054-1063 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 1218-1227 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T14 1247-1294 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T15 1247-1280 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T16 1296-1304 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 1331-1359 Disease denotes respiratory tract infections http://purl.obolibrary.org/obo/MONDO_0024355
T18 1371-1406 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T19 1377-1406 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T20 1408-1412 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T21 1447-1471 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T22 1473-1481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 1515-1519 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T24 1690-1698 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 1763-1772 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T26 1840-1848 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 1893-1930 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T28 1913-1930 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T29 1932-1936 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T30 1952-1984 Disease denotes obstructive sleep apnea syndrome http://purl.obolibrary.org/obo/MONDO_0007147
T31 1964-1975 Disease denotes sleep apnea http://purl.obolibrary.org/obo/MONDO_0005296
T32 2004-2019 Disease denotes type 2 diabetes http://purl.obolibrary.org/obo/MONDO_0005148
T33 2011-2019 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T34 2043-2054 Disease denotes retinopathy http://purl.obolibrary.org/obo/MONDO_0005283
T35 2056-2067 Disease denotes nephropathy http://purl.obolibrary.org/obo/MONDO_0005240
T36 2069-2072 Disease denotes CKD http://purl.obolibrary.org/obo/MONDO_0005300
T37 2138-2152 Disease denotes polyneuropathy http://purl.obolibrary.org/obo/MONDO_0001824
T38 2164-2176 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T39 2178-2200 Disease denotes coronary heart disease http://purl.obolibrary.org/obo/MONDO_0005010
T40 2187-2200 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T41 2205-2212 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T42 2291-2301 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T43 3112-3120 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 3959-3963 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T45 5163-5176 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T46 5445-5463 Disease denotes multiorgan failure http://purl.obolibrary.org/obo/MONDO_0043726
T47 5535-5543 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 5692-5696 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T49 5699-5734 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T50 5705-5734 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T51 5763-5771 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 5776-5823 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T53 6643-6651 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T54 6677-6694 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T55 6794-6804 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T56 6906-6928 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T57 6915-6928 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T58 6947-6955 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 6967-6971 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T60 7150-7152 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T61 7283-7295 Disease denotes mucormycosis http://purl.obolibrary.org/obo/MONDO_0019136
T62 7336-7346 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T63 7409-7417 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 7530-7538 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 7642-7651 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T66 7732-7741 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T67 7992-8001 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T68 8162-8171 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T69 8311-8333 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T70 8320-8333 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T71 8584-8592 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 8757-8767 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T73 8944-8953 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T74 9154-9162 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T75 9355-9361 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T76 9362-9369 Disease denotes Mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T77 10007-10016 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T78 10021-10034 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T79 10220-10233 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T80 10332-10348 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T81 10354-10363 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T82 10367-10393 Disease denotes cytomegalovirus infections http://purl.obolibrary.org/obo/MONDO_0005132
T83 10500-10516 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T84 10768-10776 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 10779-10789 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T86 10872-10882 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T87 10974-10982 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T88 11059-11067 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 191-192 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 872-877 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T4 1164-1165 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1325-1348 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T6 1569-1570 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1798-1799 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1812-1816 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T9 1812-1816 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T10 1986-1993 http://purl.obolibrary.org/obo/PR_000009054 denotes insulin
T11 2029-2034 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T12 2155-2163 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T13 2155-2163 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T14 2187-2192 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T15 2187-2192 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T16 2187-2192 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T17 2187-2192 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T18 2286-2290 http://purl.obolibrary.org/obo/UBERON_0001638 denotes vein
T19 2286-2290 http://www.ebi.ac.uk/efo/EFO_0000816 denotes vein
T20 2365-2366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2568-2575 http://purl.obolibrary.org/obo/PR_000009054 denotes insulin
T22 2712-2720 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T23 2712-2720 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T24 2721-2724 http://purl.obolibrary.org/obo/CLO_0008477 denotes pO2
T25 2772-2777 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T26 2778-2782 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T27 2947-2952 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T28 3017-3020 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2 a
T29 3025-3026 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T30 3368-3376 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T31 3368-3376 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T32 3377-3380 http://purl.obolibrary.org/obo/CLO_0008477 denotes pO2
T33 3419-3424 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T34 3505-3506 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 3555-3556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 3607-3612 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 3613-3617 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T38 3739-3752 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin-6
T39 3761-3763 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T40 3780-3783 http://purl.obolibrary.org/obo/CLO_0001379 denotes 465
T41 4135-4140 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T42 4156-4157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4544-4550 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T44 4620-4626 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T45 4664-4676 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T46 4736-4737 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 5663-5669 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T48 5936-5941 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T49 6023-6025 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2a
T50 6030-6031 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T51 6057-6062 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T52 6118-6123 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T53 6196-6213 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T54 6242-6247 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T55 6307-6312 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T56 6411-6412 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 6494-6503 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T58 6515-6519 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T59 6515-6519 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T60 6723-6730 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T61 6887-6888 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6932-6933 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 7014-7015 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 7040-7044 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T65 7112-7113 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 7196-7197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 7215-7216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7370-7375 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T69 7389-7390 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 7556-7557 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 7652-7653 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 7715-7716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 7743-7745 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T74 7975-7987 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T75 8005-8011 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T76 8042-8043 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 8109-8113 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T78 8122-8130 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T79 8216-8228 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T80 8236-8243 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airways
T81 8672-8682 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing is
T82 8832-8833 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 8984-8985 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 9312-9324 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T85 9454-9455 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 9656-9661 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T87 9677-9682 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T88 9967-9968 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 10660-10673 http://purl.obolibrary.org/obo/CL_0000912 denotes T-helper cell
T90 10703-10707 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 280-283 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T3 300-303 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T5 361-364 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T7 1041-1044 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T9 1122-1125 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T11 1723-1726 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T13 1812-1816 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T14 1938-1942 Chemical denotes GOLD http://purl.obolibrary.org/obo/CHEBI_59965
T15 1986-1993 Chemical denotes insulin http://purl.obolibrary.org/obo/CHEBI_145810
T16 2379-2383 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T17 2384-2391 Chemical denotes agonist http://purl.obolibrary.org/obo/CHEBI_48705
T18 2404-2425 Chemical denotes muscarinic antagonist http://purl.obolibrary.org/obo/CHEBI_48876
T19 2415-2425 Chemical denotes antagonist http://purl.obolibrary.org/obo/CHEBI_48706
T20 2447-2461 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T21 2470-2480 Chemical denotes budesonide http://purl.obolibrary.org/obo/CHEBI_3207
T22 2491-2500 Chemical denotes valsartan http://purl.obolibrary.org/obo/CHEBI_9927
T23 2502-2516 Chemical denotes spironolactone http://purl.obolibrary.org/obo/CHEBI_9241
T24 2518-2528 Chemical denotes ivabradine http://purl.obolibrary.org/obo/CHEBI_85966|http://purl.obolibrary.org/obo/CHEBI_85969
T26 2530-2542 Chemical denotes atorvastatin http://purl.obolibrary.org/obo/CHEBI_39548
T27 2544-2553 Chemical denotes metformin http://purl.obolibrary.org/obo/CHEBI_6801
T28 2555-2566 Chemical denotes liraglutide http://purl.obolibrary.org/obo/CHEBI_71193
T29 2568-2575 Chemical denotes insulin http://purl.obolibrary.org/obo/CHEBI_145810
T30 2833-2840 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 3230-3241 Chemical denotes doxycycline http://purl.obolibrary.org/obo/CHEBI_50845|http://purl.obolibrary.org/obo/CHEBI_60648
T33 3791-3801 Chemical denotes Creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T34 4001-4010 Chemical denotes meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T35 4023-4035 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T36 4057-4075 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T37 4434-4446 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T38 4552-4555 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T39 4596-4603 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T40 4781-4794 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T41 4875-4888 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T42 4901-4907 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T43 5044-5047 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T44 5222-5234 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T45 5355-5367 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T46 5417-5427 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T47 5644-5647 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T48 6709-6722 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T49 7037-7039 Chemical denotes Ag http://purl.obolibrary.org/obo/CHEBI_30512|http://purl.obolibrary.org/obo/CHEBI_9141
T51 7361-7364 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T53 7824-7827 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T55 8037-8040 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T56 8044-8046 Chemical denotes CE http://purl.obolibrary.org/obo/CHEBI_3663
T57 8249-8252 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T58 8386-8399 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T59 8568-8570 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T60 8662-8671 Chemical denotes biomarker http://purl.obolibrary.org/obo/CHEBI_59163
T61 8873-8875 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T62 9008-9011 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T64 9069-9071 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T65 9132-9135 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T67 9186-9189 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T69 9241-9244 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T71 9389-9392 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T73 9590-9594 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695
T74 9642-9645 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T76 9793-9796 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T78 9910-9913 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T80 9937-9940 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T82 10042-10044 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T83 10300-10303 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T85 10416-10419 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T87 10484-10487 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T89 10939-10942 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T91 11052-11055 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1964-1969 http://purl.obolibrary.org/obo/GO_0030431 denotes sleep
T2 2743-2752 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T3 3395-3404 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T4 4511-4517 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 4627-4633 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T6 6978-6984 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7 7910-7916 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T8 10332-10348 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T9 10500-10516 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T10 10660-10689 http://purl.obolibrary.org/obo/GO_0042093 denotes T-helper cell differentiation
T11 10669-10689 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation
T12 10703-10732 http://purl.obolibrary.org/obo/GO_0002443 denotes cell-mediated immune response
T13 10717-10732 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 4781-4794 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T2 4875-4888 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 6709-6722 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T4 8386-8399 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-81 Sentence denotes Invasive pulmonary aspergillosis complicating COVID-19 in the ICU - A case report
T2 83-91 Sentence denotes Abstract
T3 92-180 Sentence denotes It is not yet known, if critically ill COVID-19 patients are prone to fungal infections.
T4 181-338 Sentence denotes We report a 69-year-old patient without typical risk factors for invasive pulmonary aspergillosis (IPA), who developed IPA two weeks after onset of symptoms.
T5 339-411 Sentence denotes Our report shows that IPA may occur in critically ill COVID-19 patients.
T6 413-423 Sentence denotes Highlights
T7 424-491 Sentence denotes • Invasive pulmonary aspergillosis may complicate severe Covid-19.
T8 492-576 Sentence denotes • Physicians should be aware for aspergillosis in critically ill Covid-19 patients.
T9 577-643 Sentence denotes • Screening for aspergillosis may be indicated in these patients.
T10 645-660 Sentence denotes 1 Introduction
T11 661-820 Sentence denotes Aspergillus is an opportunistic fungal pathogen that may cause devastating disease in immunocompromised hosts, including those with hematological malignancies.
T12 821-907 Sentence denotes Aspergillus is an air-borne pathogen, bringing the lungs in the frontline for defense.
T13 908-1046 Sentence denotes Recently, severe viral pulmonary infections have shown to be associated with an increased risk for invasive pulmonary aspergillosis (IPA).
T14 1047-1206 Sentence denotes Severe influenza in critically ill patients for example, is complicated by IPA in 7–23% of cases and associated with a case fatality rate of more than 50% [1].
T15 1207-1414 Sentence denotes Similar to influenza, the newly emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) may cause severe lower respiratory tract infections leading to acute respiratory distress syndrome (ARDS).
T16 1415-1545 Sentence denotes The proportion of patients with coronavirus disease 2019 (COVID-19) who develop severe disease with ARDS is considerably high [2].
T17 1546-1644 Sentence denotes Consequently, there is a large number of patients in need for intensive care unit (ICU) admission.
T18 1645-1773 Sentence denotes It is not yet known, if patients with severe COVID-19 are at similar risk for IPA development as patients with severe influenza.
T19 1775-1782 Sentence denotes 2 Case
T20 1783-1863 Sentence denotes Here we report a 70-year-old male who was diagnosed with COVID-19 in March 2020.
T21 1864-2230 Sentence denotes Underlying diseases included chronic obstructive pulmonary disease (COPD) GOLD grade 2, obstructive sleep apnea syndrome, insulin-dependent type 2 diabetes with end-organ damage [retinopathy, nephropathy (CKD 3b according to the KDIGO classification at first presentation), polyneuropathy], arterial hypertension, coronary heart disease and obesity (body mass index:
T22 2231-2241 Sentence denotes 38 kg/m2).
T23 2242-2336 Sentence denotes Past medical history included proximal deep vein thrombosis four months prior to presentation.
T24 2337-2600 Sentence denotes His medication consisted of a long-acting beta agonist/long-acting muscarinic antagonist combination, inhaled glucocorticoid (400 μg budesonide per day), valsartan, spironolactone, ivabradine, atorvastatin, metformin, liraglutide, insulin glargine and enoxaparin.
T25 2601-2711 Sentence denotes The patient presented with productive cough, dyspnea and intermittent fever (>38.5 °C) for one week (Fig. 1 ).
T26 2712-2765 Sentence denotes Arterial pO2 was 67 mmHg while breathing ambient air.
T27 2766-2909 Sentence denotes White blood cell count was within the normal limits and C-reactive protein (CRP) was slightly elevated (33 mg/dl; upper limit of norm 5 mg/dl).
T28 2910-2946 Sentence denotes D-dimer was within the normal range.
T29 2947-3028 Sentence denotes Chest X-ray revealed bilateral basal coarse reticular opacities (Fig. 2 a and b).
T30 3029-3123 Sentence denotes Real-time polymerase chain reaction (PCR) from oropharyngeal swab was positive for SARS-CoV-2.
T31 3124-3253 Sentence denotes However, the patient refused to be hospitalized due to personal reasons and was discharged home with oral doxycycline 200 mg q.d.
T32 3254-3418 Sentence denotes One week later, the patient returned to the emergency department because of clinical deterioration and hypoxemia (arterial pO2 46 mmHg while breathing ambient air).
T33 3419-3541 Sentence denotes Chest CT-scan was performed and showed multiple bilateral ground-glass opacities with a crazy paving appearance (Fig. 2c).
T34 3542-3600 Sentence denotes In addition, a reversed halo sign was described (Fig. 2d).
T35 3601-3790 Sentence denotes White blood-cell count was slightly elevated (11.65 × 10^9 per L), neutrophils were elevated (9.7 × 10^9 per L), CRP level was 144 mg/dl, interleukin-6 was 396 pg/ml and ferritin 465 ng/ml.
T36 3791-3870 Sentence denotes Creatinine levels increased from 1.85 mg/dl (first presentation) to 3.26 mg/dl.
T37 3871-3912 Sentence denotes Lymphocytes were within the normal range.
T38 3913-4088 Sentence denotes The patient was admitted to ICU with moderate ARDS (oxygenation index 154) and received meropenem 1 g b.i.d., azithromycin 500mg once q.d., and hydroxychloroquine 200mg b.i.d.
T39 4089-4134 Sentence denotes He was intubated and mechanically ventilated.
T40 4135-4305 Sentence denotes Chest X-ray revealed a progression of the bilateral infiltrates on day 2 after ICU admission concordant with significant pulmonary deterioration (oxygenation index <100).
T41 4306-4397 Sentence denotes On day 3 of ICU stay (day 14 after onset of symptoms) endotracheal aspiration was obtained.
T42 4398-4518 Sentence denotes Culture grew Aspergillus fumigatus (voriconazole minimal inhibitory concentration 0.125 mg/L), without bacterial growth.
T43 4519-4754 Sentence denotes Aspergillus lateral-flow device (LFD) [3], detecting an Aspergillus specific antigen secreted during active growth of Aspergillus and not during colonization, was performed from the endotracheal aspirate and revealed a positive result.
T44 4755-4849 Sentence denotes Due to low sample volume, galactomannan could not be performed from this respiratory specimen.
T45 4850-4927 Sentence denotes Serum fungal biomarkers (galactomannan and 1,3-ß-D-glucan) remained negative.
T46 4928-5313 Sentence denotes Based on progression of pulmonary infiltrates, recovery of Aspergillus fumigatus in endotracheal aspirate, positive LFD in endotracheal aspirate and the clinical deterioration the patient was diagnosed with putative invasive pulmonary aspergillosis according to Blot et al. [4] and intravenous voriconazole (6 mg/kg b.i.d followed by 4 mg/kg b.i.d.) was initiated on day 4 of ICU stay.
T47 5314-5464 Sentence denotes Despite treatment of ICU and addition of voriconazole, the patient deceases 3 days after initiation of antifungal treatment due to multiorgan failure.
T48 5465-5491 Sentence denotes Autopsy was not performed.
T49 5492-5567 Sentence denotes Fig. 1 Timeline representing the course of COVID-19 in the reported patient
T50 5568-5849 Sentence denotes Abbreviations: q.d. = once daily; b.i.d. = twice daily, i.v. = intravenous; LFD = lateral-flow device; ER = emergency room; ARDS = acute respiratory distress syndrome; ICU = intensive care unit; SARS-CoV-2 = Severe acute respiratory syndrome coronavirus 2, CT = computed tomography
T51 5850-5872 Sentence denotes * Voriconazole dosage:
T52 5873-5935 Sentence denotes 6 mg/kg twice daily on day 1, followed by 4 mg/kg twice daily.
T53 5936-6010 Sentence denotes Chest imagings displayed here are also displayed in more detail in Fig. 2.
T54 6011-6105 Sentence denotes Fig. 2 Fig. 2a and b representing findings on chest X-ray performed on day 6 of symptom onset.
T55 6106-6214 Sentence denotes The lateral chest view revealed bilateral dorsal and basal coarse reticular opacities, no pleural effusions.
T56 6215-6284 Sentence denotes Fig. 2c and d representing chest CT scans on day 12 of symptom onset.
T57 6285-6569 Sentence denotes Axial CT image of the chest demonstrate extensive-ground glass opacities with bilateral and multi-lobar distribution (2c) and a combination of consolidation and surrounding ground-glass opacities basal in the posterior left lower lung (“reversed halo sign” - shown by the arrow) (2d).
T58 6571-6584 Sentence denotes 3 Discussion
T59 6585-6699 Sentence denotes From early reports from Wuhan, we know that patients with COVID-19 may develop complicating fungal infections [5].
T60 6700-6871 Sentence denotes However, galactomannan testing and other fungal diagnostics for further differentiating these infections are rarely available in the Wuhan region and China in general [6].
T61 6872-7070 Sentence denotes Here we report a case of putative invasive aspergillosis in a patient with COVID-19 associated ARDS, with growth of Aspergillus fumigatus and a positive Aspergillus-Ag test in endotracheal aspirate.
T62 7071-7177 Sentence denotes The patient presented in this report had a two-week history of symptoms before he was admitted to the ICU.
T63 7178-7369 Sentence denotes On ICU admission, a CT scan revealed a reversed halo sign that is usually suspicious for the presence of mucormycosis [7] but may also be found in other mold infections, particularly IPA [8].
T64 7370-7443 Sentence denotes Chest CT scans are a valuable tool for COVID-19 diagnosis and management.
T65 7444-7609 Sentence denotes Ground-glass opacities with or without consolidations are observed in the majority of COVID-19 cases [9,10] but a reversed halo may be observed in some patients [9].
T66 7610-7828 Sentence denotes Similar to patients with severe influenza a halo or reversed halo sign may be indicative for presence of a pulmonary mold infection [11] and should therefore trigger further diagnostic steps to confirm or rule out IPA.
T67 7829-7942 Sentence denotes For further diagnostic workup, endotracheal aspiration was performed and yielded growth of Aspergillus fumigatus.
T68 7943-8103 Sentence denotes To further discriminate between colonization and infection we tested the Aspergillus specific LFD, a CE-certified point of care assay, specific for Aspergillus.
T69 8104-8244 Sentence denotes This test detects actively growing hyphae during invasive infection and remains negative in case of Aspergillus colonization of the airways.
T70 8245-8373 Sentence denotes The LFD was recently given an BII recommendation for diagnosis of invasive aspergillosis in the ESCMID/ECMM/ERS guidelines [12].
T71 8374-8768 Sentence denotes While serum galactomannan generally lacks sensitivity in non-neutropenic patients [13], and also turned out negative in this patient, further studies are needed to evaluate the benefit of serum GM screening in COVID-19 patients where bronchoalveolar lavage fluid sampling for culture and biomarker testing is often avoided due to the risk of aerosol spreading and health care worker infections.
T72 8769-9172 Sentence denotes This seems to be of special interest as based on the data from a recently published trial, showing that GM in serum is indeed elevated in the majority of patients with severe influenza [14] on ICU and the fact that a significant amount of IPA cases on ICU are still diagnosed post-mortem only, serum GM screening may be an important tool for early recognition of IPA in critically ill COVID-19 patients.
T73 9173-9265 Sentence denotes Diagnosis of IPA in ICU patients without classical risk factors for IPA remains challenging.
T74 9266-9476 Sentence denotes The well-established criteria of the European Organization for Research and Treatment of Cancer/Mycoses Study Group (EORTC/MSG) [14] are not applicable for many of the ICU patients due to a missing host factor.
T75 9477-9575 Sentence denotes Thus, new diagnostic criteria for ICU patients were established to overcome these limitations [4].
T76 9576-9739 Sentence denotes This criteria base on clinical signs and symptoms compatible with IPA, abnormal chest imaging of the lungs and microbiological evidence of presence of Aspergillus.
T77 9740-9829 Sentence denotes This criteria turned out to be superior to the EORCT/MSG criteria in the ICU setting [4].
T78 9830-9989 Sentence denotes Also the patient reported in this case report would not have been classified as IPA according to the EORTC/MSG criteria from 2008 due to a missing host factor.
T79 9990-10239 Sentence denotes Recently, in the influenza and aspergillosis trial, GM in serum and bronchoalveolar lavage fluid was added to the ICU criteria as an additional mycological criterium to overcome the limitation of imperfect culture sensitivity for aspergillosis [15].
T80 10240-10420 Sentence denotes The patient reported here had no classical risk factors for IPA, but it is well known, that viral infections like influenza or cytomegalovirus infections increase the risk for IPA.
T81 10421-10741 Sentence denotes The pathogenetic mechanisms rendering patients susceptible for IPA during such viral infections are not completely understood at the moment but probable include viral induced overexpression of anti-inflammatory cytokines, dysregulation of T-helper cell differentiation and impaired cell-mediated immune response [16,17].
T82 10742-10906 Sentence denotes It is likely, that during SARS-CoV-2 infections similar impairment are present putting the patients at risk for complicating mold infections as seen in our patient.
T83 10907-10992 Sentence denotes Our case report highlights that IPA may occur in in critically ill COVID-19 patients.
T84 10993-11093 Sentence denotes Screening studies are needed to evaluate the prevalence of IPA in COVID-19 patients admitted to ICU.
T85 11095-11102 Sentence denotes Funding
T86 11103-11144 Sentence denotes There was no funding for this manuscript.
T87 11146-11179 Sentence denotes Declaration of competing interest
T88 11180-11266 Sentence denotes All authors declare that they have no conflicts of interest regarding this manuscript.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 0-32 Phenotype denotes Invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T2 246-278 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T3 280-283 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T4 300-303 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T5 361-364 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T6 427-459 Phenotype denotes Invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T7 931-951 Phenotype denotes pulmonary infections http://purl.obolibrary.org/obo/HP_0006532
T8 1007-1039 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T9 1041-1044 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T10 1122-1125 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T11 1325-1359 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T12 1377-1397 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T13 1723-1726 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T14 1893-1930 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T15 1932-1936 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T16 1952-1975 Phenotype denotes obstructive sleep apnea http://purl.obolibrary.org/obo/HP_0002870
T17 2004-2019 Phenotype denotes type 2 diabetes http://purl.obolibrary.org/obo/HP_0005978
T18 2043-2054 Phenotype denotes retinopathy http://purl.obolibrary.org/obo/HP_0000488
T19 2056-2067 Phenotype denotes nephropathy http://purl.obolibrary.org/obo/HP_0000112
T20 2138-2152 Phenotype denotes polyneuropathy http://purl.obolibrary.org/obo/HP_0001271
T21 2164-2176 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T22 2205-2212 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T23 2281-2301 Phenotype denotes deep vein thrombosis http://purl.obolibrary.org/obo/HP_0002625
T24 2628-2644 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T25 2646-2653 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T26 2658-2676 Phenotype denotes intermittent fever http://purl.obolibrary.org/obo/HP_0001954
T27 3357-3366 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T28 3557-3575 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T29 4373-4383 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835
T30 4952-4973 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T31 5144-5176 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T32 5705-5725 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T33 6196-6213 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T34 6522-6540 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T35 7217-7235 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T36 7361-7364 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T37 7662-7680 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T38 7824-7827 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T39 7873-7883 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835
T40 9008-9011 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T41 9132-9135 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T42 9186-9189 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T43 9241-9244 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T44 9355-9361 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T45 9642-9645 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T46 9910-9913 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T47 10300-10303 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T48 10416-10419 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T49 10484-10487 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T50 10939-10942 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T51 11052-11055 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-32 Disease denotes Invasive pulmonary aspergillosis MESH:D055744
3 46-54 Disease denotes COVID-19 MESH:C000657245
13 140-148 Species denotes patients Tax:9606
14 205-212 Species denotes patient Tax:9606
15 402-410 Species denotes patients Tax:9606
16 116-130 Disease denotes critically ill MESH:D016638
17 131-139 Disease denotes COVID-19 MESH:C000657245
18 169-179 Disease denotes infections MESH:D007239
19 246-278 Disease denotes invasive pulmonary aspergillosis MESH:D055744
20 378-392 Disease denotes critically ill MESH:D016638
21 393-401 Disease denotes COVID-19 MESH:C000657245
24 427-459 Disease denotes Invasive pulmonary aspergillosis MESH:D055744
25 482-490 Disease denotes Covid-19 MESH:C000657245
30 567-575 Species denotes patients Tax:9606
31 526-539 Disease denotes aspergillosis MESH:D001228
32 543-557 Disease denotes critically ill MESH:D016638
33 558-566 Disease denotes Covid-19 MESH:C000657245
36 634-642 Species denotes patients Tax:9606
37 594-607 Disease denotes aspergillosis MESH:D001228
61 1082-1090 Species denotes patients Tax:9606
62 1247-1294 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
63 1296-1306 Species denotes SARS-CoV-2 Tax:2697049
64 1433-1441 Species denotes patients Tax:9606
65 1587-1595 Species denotes patients Tax:9606
66 1669-1677 Species denotes patients Tax:9606
67 1742-1750 Species denotes patients Tax:9606
68 661-672 Species denotes Aspergillus Tax:746128
69 821-832 Species denotes Aspergillus Tax:746128
70 1054-1063 Species denotes influenza Tax:11308
71 1218-1227 Species denotes influenza Tax:11308
72 1763-1772 Species denotes influenza Tax:11308
73 807-819 Disease denotes malignancies MESH:D009369
74 925-951 Disease denotes viral pulmonary infections MESH:D001102
75 1007-1039 Disease denotes invasive pulmonary aspergillosis MESH:D055744
76 1067-1081 Disease denotes critically ill MESH:D016638
77 1331-1359 Disease denotes respiratory tract infections MESH:D012141
78 1371-1406 Disease denotes acute respiratory distress syndrome MESH:D012128
79 1408-1412 Disease denotes ARDS MESH:D012128
80 1447-1471 Disease denotes coronavirus disease 2019 MESH:C000657245
81 1473-1481 Disease denotes COVID-19 MESH:C000657245
82 1515-1519 Disease denotes ARDS MESH:D012128
83 1690-1698 Disease denotes COVID-19 MESH:C000657245
105 2568-2575 Gene denotes insulin Gene:3630
106 2470-2480 Chemical denotes budesonide MESH:D019819
107 2491-2500 Chemical denotes valsartan MESH:D000068756
108 2502-2516 Chemical denotes spironolactone MESH:D013148
109 2518-2528 Chemical denotes ivabradine MESH:D000077550
110 2530-2542 Chemical denotes atorvastatin MESH:D000069059
111 2544-2553 Chemical denotes metformin MESH:D008687
112 2576-2584 Chemical denotes glargine MESH:D000069036
113 2589-2599 Chemical denotes enoxaparin MESH:D017984
114 1840-1848 Disease denotes COVID-19 MESH:C000657245
115 1893-1930 Disease denotes chronic obstructive pulmonary disease MESH:D029424
116 1932-1936 Disease denotes COPD MESH:D029424
117 1952-1984 Disease denotes obstructive sleep apnea syndrome MESH:D020181
118 1986-2019 Disease denotes insulin-dependent type 2 diabetes MESH:C565100
119 2043-2054 Disease denotes retinopathy MESH:D012164
120 2056-2067 Disease denotes nephropathy MESH:D007674
121 2138-2152 Disease denotes polyneuropathy MESH:D011115
122 2164-2176 Disease denotes hypertension MESH:D006973
123 2178-2200 Disease denotes coronary heart disease MESH:D003324
124 2205-2212 Disease denotes obesity MESH:D009765
125 2281-2301 Disease denotes deep vein thrombosis MESH:D020246
127 5535-5543 Disease denotes COVID-19 MESH:C000657245
132 5763-5773 Species denotes SARS-CoV-2 Tax:2697049
133 5776-5823 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
134 5692-5696 Disease denotes ARDS MESH:D012128
135 5699-5734 Disease denotes acute respiratory distress syndrome MESH:D012128
137 5852-5864 Chemical denotes Voriconazole MESH:D065819
139 6196-6213 Disease denotes pleural effusions MESH:D010996
178 2822-2840 Gene denotes C-reactive protein Gene:1401
179 2842-2845 Gene denotes CRP Gene:1401
180 3714-3717 Gene denotes CRP Gene:1401
181 3739-3752 Gene denotes interleukin-6 Gene:3569
182 2605-2612 Species denotes patient Tax:9606
183 3112-3122 Species denotes SARS-CoV-2 Tax:2697049
184 3137-3144 Species denotes patient Tax:9606
185 3274-3281 Species denotes patient Tax:9606
186 3917-3924 Species denotes patient Tax:9606
187 4411-4432 Species denotes Aspergillus fumigatus Tax:746128
188 4987-5008 Species denotes Aspergillus fumigatus Tax:746128
189 5108-5115 Species denotes patient Tax:9606
190 5373-5380 Species denotes patient Tax:9606
191 4519-4530 Species denotes Aspergillus Tax:746128
192 4575-4586 Species denotes Aspergillus Tax:746128
193 4637-4648 Species denotes Aspergillus Tax:746128
194 2721-2724 Chemical denotes pO2 MESH:C093415
195 3230-3241 Chemical denotes doxycycline MESH:D004318
196 3377-3380 Chemical denotes pO2 MESH:C093415
197 3791-3801 Chemical denotes Creatinine MESH:D003404
198 4001-4010 Chemical denotes meropenem MESH:D000077731
199 4023-4035 Chemical denotes azithromycin MESH:D017963
200 4057-4075 Chemical denotes hydroxychloroquine MESH:D006886
201 4434-4446 Chemical denotes voriconazole MESH:D065819
202 4781-4794 Chemical denotes galactomannan MESH:C012990
203 4875-4888 Chemical denotes galactomannan MESH:C012990
204 4893-4907 Chemical denotes 1,3-ß-D-glucan
205 5222-5234 Chemical denotes voriconazole MESH:D065819
206 5355-5367 Chemical denotes voriconazole MESH:D065819
207 2639-2644 Disease denotes cough MESH:D003371
208 2646-2653 Disease denotes dyspnea MESH:D004417
209 2671-2676 Disease denotes fever MESH:D005334
210 3357-3366 Disease denotes hypoxemia MESH:D000860
211 3959-3963 Disease denotes ARDS MESH:D012128
212 4256-4279 Disease denotes pulmonary deterioration MESH:D008171
213 4952-4973 Disease denotes pulmonary infiltrates MESH:D017254
214 5144-5176 Disease denotes invasive pulmonary aspergillosis MESH:D055744
215 5445-5463 Disease denotes multiorgan failure MESH:D009102
221 6629-6637 Species denotes patients Tax:9606
222 6709-6722 Chemical denotes galactomannan MESH:C012990
223 6643-6651 Disease denotes COVID-19 MESH:C000657245
224 6677-6694 Disease denotes fungal infections MESH:D009181
225 6794-6804 Disease denotes infections MESH:D007239
240 6934-6941 Species denotes patient Tax:9606
241 6988-7009 Species denotes Aspergillus fumigatus Tax:746128
242 7075-7082 Species denotes patient Tax:9606
243 7596-7604 Species denotes patients Tax:9606
244 7621-7629 Species denotes patients Tax:9606
245 7025-7036 Species denotes Aspergillus Tax:746128
246 7642-7651 Species denotes influenza Tax:11308
247 6906-6928 Disease denotes invasive aspergillosis MESH:D055744
248 6947-6955 Disease denotes COVID-19 MESH:C000657245
249 6967-6971 Disease denotes ARDS MESH:D012128
250 7336-7346 Disease denotes infections MESH:D007239
251 7409-7417 Disease denotes COVID-19 MESH:C000657245
252 7530-7538 Disease denotes COVID-19 MESH:C000657245
253 7717-7741 Disease denotes pulmonary mold infection MESH:D012141
261 7920-7941 Species denotes Aspergillus fumigatus Tax:746128
262 8016-8027 Species denotes Aspergillus Tax:746128
263 8091-8102 Species denotes Aspergillus Tax:746128
264 8204-8215 Species denotes Aspergillus Tax:746128
265 7992-8001 Disease denotes infection MESH:D007239
266 8153-8171 Disease denotes invasive infection MESH:D007239
267 8311-8333 Disease denotes invasive aspergillosis MESH:D055744
282 8447-8455 Species denotes patients Tax:9606
283 8499-8506 Species denotes patient Tax:9606
284 8593-8601 Species denotes patients Tax:9606
285 8923-8931 Species denotes patients Tax:9606
286 9163-9171 Species denotes patients Tax:9606
287 8944-8953 Species denotes influenza Tax:11308
288 8386-8399 Chemical denotes galactomannan MESH:C012990
289 8568-8570 Chemical denotes GM MESH:D005839
290 8873-8875 Chemical denotes GM MESH:D005839
291 9069-9071 Chemical denotes GM MESH:D005839
292 8584-8592 Disease denotes COVID-19 MESH:C000657245
293 8757-8767 Disease denotes infections MESH:D007239
294 9139-9153 Disease denotes critically ill MESH:D016638
295 9154-9162 Disease denotes COVID-19 MESH:C000657245
306 9197-9205 Species denotes patients Tax:9606
307 9438-9446 Species denotes patients Tax:9606
308 9515-9523 Species denotes patients Tax:9606
309 9839-9846 Species denotes patient Tax:9606
310 9727-9738 Species denotes Aspergillus Tax:746128
311 10007-10016 Species denotes influenza Tax:11308
312 10042-10044 Chemical denotes GM MESH:D005839
313 9355-9361 Disease denotes Cancer MESH:D009369
314 10021-10034 Disease denotes aspergillosis MESH:D001228
315 10220-10233 Disease denotes aspergillosis MESH:D001228
326 10244-10251 Species denotes patient Tax:9606
327 10459-10467 Species denotes patients Tax:9606
328 10833-10841 Species denotes patients Tax:9606
329 10898-10905 Species denotes patient Tax:9606
330 10354-10363 Species denotes influenza Tax:11308
331 10332-10348 Disease denotes viral infections MESH:D001102
332 10367-10393 Disease denotes cytomegalovirus infections MESH:D003586
333 10500-10516 Disease denotes viral infections MESH:D001102
334 10768-10789 Disease denotes SARS-CoV-2 infections MESH:C000657245
335 10872-10882 Disease denotes infections MESH:D007239
341 10983-10991 Species denotes patients Tax:9606
342 11068-11076 Species denotes patients Tax:9606
343 10959-10973 Disease denotes critically ill MESH:D016638
344 10974-10982 Disease denotes COVID-19 MESH:C000657245
345 11059-11067 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32395423-25203869-68941087 4558-4559 25203869 denotes 3
32395423-22517788-68941088 5203-5204 22517788 denotes 4
32395423-32007143-68941089 6696-6697 32007143 denotes 5
32395423-29036605-68941090 6868-6869 29036605 denotes 6
32395423-31699664-68941091 7297-7298 31699664 denotes 7
32395423-22553298-68941092 7366-7367 22553298 denotes 8
32395423-30565352-68941093 8457-8459 30565352 denotes 13
32395423-22517788-68941094 9572-9573 22517788 denotes 4
32395423-22517788-68941095 9826-9827 22517788 denotes 4
32395423-30076119-68941096 10235-10237 30076119 denotes 15
32395423-24590244-68941097 10734-10736 24590244 denotes 16
32395423-28389392-68941098 10737-10739 28389392 denotes 17