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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 175-178 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 678-681 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T3 890-893 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 1487-1498 Body_part denotes conjunctiva http://purl.org/sig/ont/fma/fma59011
T5 2103-2108 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T6 2336-2342 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T7 2490-2494 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T8 3001-3007 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 3353-3358 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T10 3412-3421 Body_part denotes left lung http://purl.org/sig/ont/fma/fma7310
T11 3878-3882 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T12 3937-3941 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T13 4537-4541 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T14 4602-4608 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T15 4764-4770 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T16 4775-4781 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T17 5062-5065 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T18 5206-5212 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T19 5214-5220 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T20 5465-5469 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T21 5500-5504 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T22 5552-5556 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T23 5647-5656 Body_part denotes left eyes http://purl.org/sig/ont/fma/fma54450
T24 5652-5656 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T25 5839-5863 Body_part denotes preauricular lymph nodes http://purl.org/sig/ont/fma/fma228925
T26 6605-6608 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T27 6807-6813 Body_part denotes macula http://purl.org/sig/ont/fma/fma58637
T28 6868-6872 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T29 7001-7004 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T30 7153-7156 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T31 7210-7213 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T32 7783-7786 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T33 8202-8206 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T34 8236-8240 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T35 8275-8298 Body_part denotes preauricular lymph node http://purl.org/sig/ont/fma/fma61219
T36 8390-8394 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T37 8659-8680 Body_part denotes palpebral conjunctiva http://purl.org/sig/ont/fma/fma59025
T38 8808-8811 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T39 8988-8994 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T40 9098-9101 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T41 9561-9564 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T42 9655-9658 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T43 10205-10209 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448
T44 10332-10335 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T45 10435-10438 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 10810-10816 Body_part denotes retina http://purl.org/sig/ont/fma/fma58301
T47 10833-10859 Body_part denotes retinal pigment epithelium http://purl.org/sig/ont/fma/fma58627
T48 10849-10859 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T49 10887-10896 Body_part denotes epithelia http://purl.org/sig/ont/fma/fma9639
T50 11043-11046 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 11063-11079 Body_part denotes conjunctival sac http://purl.org/sig/ont/fma/fma20291
T52 11263-11268 Body_part denotes tears http://purl.org/sig/ont/fma/fma59756
T53 11363-11366 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T54 11789-11792 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T55 11867-11870 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T56 11900-11917 Body_part denotes conjunctival sacs http://purl.org/sig/ont/fma/fma20291
T57 11949-11952 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T58 12056-12059 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T59 12063-12080 Body_part denotes conjunctival sacs http://purl.org/sig/ont/fma/fma20291
T60 12317-12320 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T61 12987-12991 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T62 13160-13164 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T63 13170-13181 Body_part denotes conjunctiva http://purl.org/sig/ont/fma/fma59011
T64 13341-13348 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T65 13431-13435 Body_part denotes eyes http://purl.org/sig/ont/fma/fma54448

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1487-1498 Body_part denotes conjunctiva http://purl.obolibrary.org/obo/UBERON_0001811
T2 2103-2108 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 2336-2342 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T4 3001-3007 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 3353-3358 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 3412-3421 Body_part denotes left lung http://purl.obolibrary.org/obo/UBERON_0002168
T7 3417-3421 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 3937-3941 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 4602-4608 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T10 4764-4770 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T11 4775-4781 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T12 5206-5212 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T13 5214-5220 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T14 5566-5571 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T15 5647-5656 Body_part denotes left eyes http://purl.obolibrary.org/obo/UBERON_0004548
T16 5852-5863 Body_part denotes lymph nodes http://purl.obolibrary.org/obo/UBERON_0000029
T17 5852-5857 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T18 6605-6608 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T19 6807-6813 Body_part denotes macula http://purl.obolibrary.org/obo/UBERON_0000054
T20 7001-7004 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T21 7783-7786 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T22 8288-8298 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T23 8288-8293 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T24 8659-8680 Body_part denotes palpebral conjunctiva http://purl.obolibrary.org/obo/UBERON_0001812
T25 8669-8680 Body_part denotes conjunctiva http://purl.obolibrary.org/obo/UBERON_0001811
T26 8988-8994 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T27 9561-9564 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T28 10810-10816 Body_part denotes retina http://purl.obolibrary.org/obo/UBERON_0000966
T29 10849-10859 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T30 10887-10896 Body_part denotes epithelia http://purl.obolibrary.org/obo/UBERON_0000483
T31 11063-11079 Body_part denotes conjunctival sac http://purl.obolibrary.org/obo/UBERON_0005908
T32 11076-11079 Body_part denotes sac http://purl.obolibrary.org/obo/UBERON_0009856
T33 11900-11917 Body_part denotes conjunctival sacs http://purl.obolibrary.org/obo/UBERON_0005908
T34 12063-12080 Body_part denotes conjunctival sacs http://purl.obolibrary.org/obo/UBERON_0005908
T35 12987-12991 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T36 13160-13164 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T37 13170-13181 Body_part denotes conjunctiva http://purl.obolibrary.org/obo/UBERON_0001811

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 182-229 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T2 182-215 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T3 231-239 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 334-342 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 403-411 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 426-446 Disease denotes acute conjunctivitis http://purl.obolibrary.org/obo/MONDO_0001214
T7 432-446 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T8 592-600 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 704-712 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 809-840 Disease denotes acute follicular conjunctivitis http://purl.obolibrary.org/obo/MONDO_0001228
T11 826-840 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T12 1022-1030 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1106-1114 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 1130-1138 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 1192-1212 Disease denotes viral conjunctivitis http://purl.obolibrary.org/obo/MONDO_0005634|http://purl.obolibrary.org/obo/MONDO_0043541
T17 1198-1212 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T18 1355-1364 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T19 1576-1584 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 1658-1666 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 1724-1759 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T22 1730-1759 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T23 1781-1791 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T24 1859-1906 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T25 1859-1892 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T26 1908-1916 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 1984-1998 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T28 2052-2070 Disease denotes retinal vasculitis http://purl.obolibrary.org/obo/MONDO_0006950
T29 2060-2070 Disease denotes vasculitis http://purl.obolibrary.org/obo/MONDO_0018882
T30 2204-2213 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 2248-2256 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 2259-2268 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T33 2442-2450 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 2639-2647 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 2996-3007 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T36 3012-3021 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T37 3134-3142 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 3338-3346 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 3395-3404 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T40 3602-3610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 3671-3673 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T42 3702-3711 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T43 3814-3822 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 4136-4144 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 4597-4608 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T46 4613-4622 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T47 4666-4674 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 4949-4957 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 5001-5048 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T50 5050-5058 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 5975-5987 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T52 6337-6357 Disease denotes viral conjunctivitis http://purl.obolibrary.org/obo/MONDO_0005634|http://purl.obolibrary.org/obo/MONDO_0043541
T54 6343-6357 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T55 6941-6948 Disease denotes sterile http://purl.obolibrary.org/obo/MONDO_0005047
T56 7135-7143 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 7308-7316 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 7746-7754 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 8049-8057 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 8360-8362 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T61 8797-8805 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 9087-9095 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 9296-9304 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 9403-9411 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 9509-9529 Disease denotes viral conjunctivitis http://purl.obolibrary.org/obo/MONDO_0005634|http://purl.obolibrary.org/obo/MONDO_0043541
T67 9515-9529 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T68 9644-9652 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 9876-9884 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 9973-9981 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 10099-10107 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 10110-10119 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T73 10164-10172 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T74 10188-10190 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T75 10243-10251 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 10254-10263 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 10321-10329 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 10506-10526 Disease denotes viral conjunctivitis http://purl.obolibrary.org/obo/MONDO_0005634|http://purl.obolibrary.org/obo/MONDO_0043541
T80 10512-10526 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T81 10541-10549 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 10602-10610 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 10744-10752 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 11010-11018 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 11021-11030 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T86 11032-11040 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T87 11233-11237 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T88 11466-11475 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T89 11527-11535 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 11568-11576 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T91 11647-11655 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 11851-11859 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 11913-11917 Disease denotes sacs http://purl.obolibrary.org/obo/MONDO_0010041
T94 12076-12080 Disease denotes sacs http://purl.obolibrary.org/obo/MONDO_0010041
T95 12180-12200 Disease denotes acute conjunctivitis http://purl.obolibrary.org/obo/MONDO_0001214
T96 12186-12200 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T97 12545-12565 Disease denotes acute conjunctivitis http://purl.obolibrary.org/obo/MONDO_0001214
T98 12551-12565 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T99 12614-12622 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T100 12625-12634 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T101 12788-12796 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T102 12799-12808 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T103 12895-12903 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T104 12965-12974 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T105 12993-13001 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 13258-13266 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 13269-13278 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 13413-13421 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 13568-13570 Disease denotes MC http://purl.obolibrary.org/obo/MONDO_0007407
T110 13781-13783 Disease denotes MC http://purl.obolibrary.org/obo/MONDO_0007407

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 25-26 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 277-278 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 370-371 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 603-608 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 1449-1454 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 1487-1498 http://purl.obolibrary.org/obo/UBERON_0001811 denotes conjunctiva
T7 1487-1498 http://www.ebi.ac.uk/efo/EFO_0000374 denotes conjunctiva
T8 1547-1548 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1615-1618 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1670-1671 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1834-1835 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2002-2008 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T13 2071-2074 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 4
T14 2103-2108 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T15 2103-2108 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T16 2175-2181 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T17 2417-2418 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2490-2494 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T19 2931-2932 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2962-2963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3087-3088 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3119-3120 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 3329-3333 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T24 3353-3358 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T25 3412-3421 http://purl.obolibrary.org/obo/UBERON_0002168 denotes left lung
T26 3582-3588 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T27 3616-3617 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3876-3877 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3937-3941 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T30 3937-3941 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T31 4044-4050 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T32 4100-4106 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T33 4188-4191 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T34 4281-4282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4390-4392 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T36 4515-4516 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4677-4684 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T38 4930-4932 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T39 5360-5361 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 5500-5504 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T41 5552-5556 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T42 5647-5656 http://purl.obolibrary.org/obo/UBERON_0004548 denotes left eyes
T43 5852-5863 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
T44 6479-6480 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T45 6521-6522 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T46 6605-6608 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T47 6724-6725 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 6770-6771 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 6868-6872 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T50 7001-7004 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T51 7068-7069 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 7107-7110 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4°C
T53 7124-7130 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T54 7251-7252 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 7629-7631 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T56 7783-7786 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T57 7848-7849 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T58 7997-8000 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T59 8202-8206 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T60 8288-8298 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
T61 8317-8319 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T62 8390-8394 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T63 8538-8539 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T64 8669-8680 http://purl.obolibrary.org/obo/UBERON_0001811 denotes conjunctiva
T65 8669-8680 http://www.ebi.ac.uk/efo/EFO_0000374 denotes conjunctiva
T66 8824-8825 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 8872-8877 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T68 9221-9222 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 9276-9282 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T70 9378-9379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 9561-9564 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T72 9624-9630 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T73 10205-10209 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T74 10267-10268 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T75 10289-10295 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T76 10461-10463 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T77 10552-10557 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T78 10720-10721 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 10774-10777 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T80 10804-10809 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T81 10810-10816 http://purl.obolibrary.org/obo/UBERON_0000966 denotes retina
T82 10849-10859 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T83 11076-11079 http://purl.obolibrary.org/obo/UBERON_0009856 denotes sac
T84 11157-11158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 11390-11391 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 11438-11444 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T87 11836-11837 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 11913-11917 http://purl.obolibrary.org/obo/UBERON_0009856 denotes sacs
T89 12076-12080 http://purl.obolibrary.org/obo/UBERON_0009856 denotes sacs
T90 12275-12276 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 12599-12600 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 13046-13047 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 13170-13181 http://purl.obolibrary.org/obo/UBERON_0001811 denotes conjunctiva
T94 13170-13181 http://www.ebi.ac.uk/efo/EFO_0000374 denotes conjunctiva
T95 13249-13254 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T96 13297-13302 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T97 13366-13367 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 13431-13435 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eyes
T99 13438-13440 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T100 13564-13566 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T101 13666-13668 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T102 13693-13695 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T103 13777-13779 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T104 14125-14129 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T105 14125-14129 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T106 14167-14171 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T107 14167-14171 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 509-519 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T2 2025-2032 Chemical denotes retinal http://purl.obolibrary.org/obo/CHEBI_15035
T3 2052-2059 Chemical denotes retinal http://purl.obolibrary.org/obo/CHEBI_15035
T4 2075-2082 Chemical denotes retinal http://purl.obolibrary.org/obo/CHEBI_15035
T5 2109-2116 Chemical denotes retinal http://purl.obolibrary.org/obo/CHEBI_15035
T6 2675-2685 Chemical denotes ophthalmic http://purl.obolibrary.org/obo/CHEBI_66981
T7 4288-4297 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T8 4303-4312 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T9 6595-6604 Chemical denotes ribavirin http://purl.obolibrary.org/obo/CHEBI_63580
T10 9551-9560 Chemical denotes ribavirin http://purl.obolibrary.org/obo/CHEBI_63580
T11 10833-10840 Chemical denotes retinal http://purl.obolibrary.org/obo/CHEBI_15035
T12 13438-13440 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T13 13445-13447 Chemical denotes ML http://purl.obolibrary.org/obo/CHEBI_74705
T14 13469-13471 Chemical denotes LL http://purl.obolibrary.org/obo/CHEBI_73531
T15 13532-13534 Chemical denotes LL http://purl.obolibrary.org/obo/CHEBI_73531
T16 13564-13566 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T17 13568-13570 Chemical denotes MC http://purl.obolibrary.org/obo/CHEBI_34342
T18 13628-13630 Chemical denotes KQ http://purl.obolibrary.org/obo/CHEBI_73600
T19 13632-13634 Chemical denotes TH http://purl.obolibrary.org/obo/CHEBI_73663
T20 13639-13641 Chemical denotes ML http://purl.obolibrary.org/obo/CHEBI_74705
T21 13666-13668 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T22 13693-13695 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T23 13765-13767 Chemical denotes LL http://purl.obolibrary.org/obo/CHEBI_73531
T24 13777-13779 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T25 13781-13783 Chemical denotes MC http://purl.obolibrary.org/obo/CHEBI_34342
T26 13797-13799 Chemical denotes KQ http://purl.obolibrary.org/obo/CHEBI_73600
T27 13801-13803 Chemical denotes TH http://purl.obolibrary.org/obo/CHEBI_73663
T28 13808-13810 Chemical denotes ML http://purl.obolibrary.org/obo/CHEBI_74705

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 432-446 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T2 826-840 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T3 1198-1212 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T4 1730-1750 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T5 1984-1998 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T6 2052-2070 Phenotype denotes retinal vasculitis http://purl.obolibrary.org/obo/HP_0025188
T7 2996-3007 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T8 3012-3021 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T9 3395-3404 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T10 3968-3975 Phenotype denotes rhonchi http://purl.obolibrary.org/obo/HP_0030831
T11 4597-4608 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T12 4613-4622 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T13 5484-5491 Phenotype denotes tearing http://purl.obolibrary.org/obo/HP_0009926
T14 5513-5527 Phenotype denotes blurred vision http://purl.obolibrary.org/obo/HP_0000622
T15 5724-5746 Phenotype denotes conjunctival injection http://purl.obolibrary.org/obo/HP_0030953
T16 5785-5807 Phenotype denotes conjunctival follicles http://purl.obolibrary.org/obo/HP_0030947
T17 5868-5895 Phenotype denotes subconjunctival haemorrhage http://purl.obolibrary.org/obo/HP_0011896
T18 6343-6357 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T19 6409-6431 Phenotype denotes conjunctival injection http://purl.obolibrary.org/obo/HP_0030953
T20 6455-6477 Phenotype denotes conjunctival follicles http://purl.obolibrary.org/obo/HP_0030947
T21 8186-8193 Phenotype denotes tearing http://purl.obolibrary.org/obo/HP_0009926
T22 8598-8620 Phenotype denotes conjunctival injection http://purl.obolibrary.org/obo/HP_0030953
T23 9515-9529 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T24 10201-10209 Phenotype denotes red eyes http://purl.obolibrary.org/obo/HP_0025337
T25 10512-10526 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T26 12186-12200 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T27 12551-12565 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 533-554 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 541-554 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 2125-2134 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown
T4 3618-3639 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T5 3626-3639 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T6 5521-5527 http://purl.obolibrary.org/obo/GO_0007601 denotes vision
T7 5975-5987 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T8 7070-7085 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T9 7076-7085 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-93 Sentence denotes Ocular manifestations of a hospitalised patient with confirmed 2019 novel coronavirus disease
T2 95-103 Sentence denotes Abstract
T3 104-111 Sentence denotes Purpose
T4 112-344 Sentence denotes To report the ocular characteristics and the presence of viral RNA of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in conjunctival swab specimens in a patient with confirmed 2019 novel coronavirus disease (COVID-19).
T5 346-369 Sentence denotes Participant and methods
T6 370-490 Sentence denotes A 30-year-old man with confirmed COVID-19 and bilateral acute conjunctivitis which occurred 13 days after illness onset.
T7 491-631 Sentence denotes Based on detailed ophthalmic examination, reverse transcription PCR (RT-PCR) was performed to detect SARS-CoV-2 virus in conjunctival swabs.
T8 632-760 Sentence denotes The ocular characteristics, presence of viral RNA and viral dynamics of SARS-CoV-2 in the conjunctival specimens were evaluated.
T9 762-769 Sentence denotes Results
T10 770-841 Sentence denotes Slit lamp examination showed bilateral acute follicular conjunctivitis.
T11 842-962 Sentence denotes RT-PCR assay demonstrated the presence of viral RNA in conjunctival specimen 13 days after onset (cycle threshold value:
T12 963-967 Sentence denotes 31).
T13 968-1063 Sentence denotes The conjunctival swab specimens remained positive for SARS-CoV-2 on 14 and 17 days after onset.
T14 1064-1117 Sentence denotes On day 19, RT-PCR result was negative for SARS-CoV-2.
T15 1119-1129 Sentence denotes Conclusion
T16 1130-1244 Sentence denotes SARS-CoV-2 is capable of causing ocular complications such as viral conjunctivitis in the middle phase of illness.
T17 1245-1365 Sentence denotes Precautionary measures are recommended when examining infected patients throughout the clinical course of the infection.
T18 1366-1499 Sentence denotes However, conjunctival sampling might not be useful for early diagnosis because the virus may not appear initially in the conjunctiva.
T19 1501-1513 Sentence denotes Introduction
T20 1514-1655 Sentence denotes In December 2019, an outbreak of a novel coronavirus disease (COVID-19) emerged in Wuhan, China, and has quickly spread throughout the world.
T21 1656-1920 Sentence denotes 1 COVID-19 is a highly contagious disease capable of progression to acute respiratory distress syndrome and even death.1 The infectious agent of this disease entity is caused by a novel betacoronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
T22 1921-2214 Sentence denotes Coronavirus had been previously reported to be associated with conjunctivitis in humans.2 Additionally, retinal disorders, such as retinal vasculitis,3 4 retinal degeneration5 6 and blood–retinal barrier breakdown,7 had been demonstrated in experimental animal models of coronavirus infection.
T23 2215-2372 Sentence denotes However, ocular complications of SARS-CoV-2 infection have not been widely reported.8 In addition, viral loads in ocular tissue are still to be investigated.
T24 2373-2559 Sentence denotes Here, we report the ocular presentations of a patient with confirmed COVID-19 who developed bilateral redness of the eyes 13 days after the onset of systemic symptoms in Shenzhen, China.
T25 2560-2700 Sentence denotes Our findings will facilitate understanding of ocular features in patients with COVID-19 and the clinical course of ophthalmic complications.
T26 2702-2713 Sentence denotes Case report
T27 2714-2849 Sentence denotes Institutional review board approval was obtained for this study and we strictly followed the Declaration of Helsinki in all procedures.
T28 2850-2910 Sentence denotes Written informed consent was obtained from the case patient.
T29 2911-3073 Sentence denotes On 4 February 2020, a 30-year-old man presented to a local hospital with symptoms of sore throat and diarrhoea that started on 31 January 2020 (day 1 of illness).
T30 3074-3170 Sentence denotes He disclosed a history of close contact with a patient with COVID-19 from 28 to 30 January 2020.
T31 3171-3208 Sentence denotes His medical history was unremarkable.
T32 3209-3245 Sentence denotes His physical examination was normal.
T33 3246-3422 Sentence denotes Given the patient’s contact history, nasopharyngeal swab samples were collected to test for SARS-CoV-2 and chest CT was performed, showing localised emphysema in the left lung.
T34 3423-3473 Sentence denotes The patient was then discharged to home isolation.
T35 3474-3659 Sentence denotes On 5 February 2020 (day 6 of illness), the local hospital confirmed that the patient’s nasopharyngeal swabs tested positive for SARS-CoV-2 in a reverse transcription PCR (RT-PCR) assay.
T36 3660-3841 Sentence denotes Therefore, he was admitted to an airborne infection isolation ward at the Third People’s Hospital of Shenzhen, the only designated hospital for confirmed COVID-19 cases in Shenzhen.
T37 3842-3936 Sentence denotes On admission, vital signs, except a body temperature of 37.3°C, were within the normal ranges.
T38 3937-3976 Sentence denotes Lung auscultation demonstrated rhonchi.
T39 3977-4073 Sentence denotes For differential diagnosis, other viral respiratory pathogens were tested with negative results.
T40 4074-4240 Sentence denotes Nasopharyngeal swabs were tested again and found positive for SARS-CoV-2 by Shenzhen Centers for Disease Control (CDC) on day 2 of hospitalisation (day 7 of illness).
T41 4241-4287 Sentence denotes Umifenovir was administered three times a day.
T42 4288-4394 Sentence denotes Lopinavir plus ritonavir tablets were administered beginning on day 6 of hospitalisation (illness day 11).
T43 4395-4434 Sentence denotes Other treatment was largely supportive.
T44 4435-4565 Sentence denotes After such treatment, the patient’s vital signs were largely stable, apart from a mild fluctuation in body temperature (figure 1).
T45 4566-4646 Sentence denotes He stated that his symptoms of sore throat and diarrhoea had gradually improved.
T46 4647-4803 Sentence denotes Samples for repeat SARS-CoV-2 testing were obtained on illness days 13, 17 and 19 and included nasopharyngeal swabs, sputum and saliva specimens (figure 2).
T47 4804-4948 Sentence denotes Figure 1 Timeline of systemic and ocular symptoms according to day of illness and day of hospitalisation (28 January 2020 to 18 February 2020).
T48 4949-4990 Sentence denotes COVID-19, 2019 novel coronavirus disease.
T49 4991-5145 Sentence denotes Figure 2 Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA detected in different types of clinical samples obtained from the case patient.
T50 5146-5255 Sentence denotes Dynamic alterations of viral loads in nasopharyngeal swabs, sputum, saliva and conjunctival swabs were shown.
T51 5256-5327 Sentence denotes Cycle threshold (Ct) values were inversely proportional to viral loads.
T52 5328-5377 Sentence denotes Negative results are shown with a Ct value of 40.
T53 5378-5528 Sentence denotes On day 8 of hospitalisation (day 13 of illness), the patient reported redness, foreign body sensation and tearing in both eyes without blurred vision.
T54 5529-5572 Sentence denotes He denied touching his eyes with his hands.
T55 5573-5671 Sentence denotes Best-corrected visual acuities were logMAR 0.10 and 0.05 in the right and left eyes, respectively.
T56 5672-5864 Sentence denotes Slit lamp examination identified bilateral moderate conjunctival injection, watery discharge, inferior palpebral conjunctival follicles (figure 3) and tender palpable preauricular lymph nodes.
T57 5865-5928 Sentence denotes No subconjunctival haemorrhage or pseudomembrane were observed.
T58 5929-6002 Sentence denotes No lesions on the corneal or anterior chamber inflammation were detected.
T59 6003-6122 Sentence denotes Fundus examination using Kowa non-mydriatic fundus camera (Kowa Company, Nagoya, Japan) revealed unremarkable findings.
T60 6123-6278 Sentence denotes Macular ultrastructure and thickness measured on optical coherence tomography (Optovue, Fremont, California, USA) were within the normal ranges (figure 4).
T61 6279-6358 Sentence denotes Figure 3 Slit lamp examinations showed evidence of acute viral conjunctivitis.
T62 6359-6488 Sentence denotes The examination on illness day 13 showed moderate conjunctival injection and inferior palpebral conjunctival follicles (A and D).
T63 6489-6657 Sentence denotes Examinations on illness day 17 (B and E) and illness on day 19 (C and F) demonstrated that treatment with ribavirin eye-drops gradually improved the patient’s symptoms.
T64 6658-6899 Sentence denotes Figure 4 Fundus examinations on illness day 13, hospital day 8. (A) The fundus photographs were unremarkable. (B) The ultrastructure of the central macula was normal. (C) The central macular thickness in both eyes were within normal ranges.
T65 6900-7033 Sentence denotes Conjunctival swabs were taken by putting sterile synthetic fibre swabs into the lower fornix of each eye without topical anaesthesia.
T66 7034-7146 Sentence denotes The swabs were then inserted into a viral transport medium and stored at 4°C before being tested for SARS-CoV-2.
T67 7147-7250 Sentence denotes Viral RNA were obtained from the samples with the QIAamp Viral RNA Viral Kit (QIAGEN, Hilden, Germany).
T68 7251-7411 Sentence denotes A commercial kit (GeneoDX, Shanghai, China) specific for SARS-CoV-2 detection and approved by the China Food and Drug Administration was used to perform RT-PCR.
T69 7412-7494 Sentence denotes In general, viral loads are inversely correlated with cycle threshold (Ct) values.
T70 7495-7638 Sentence denotes Ct value of 40 indicates negative results.9 Routine bacterial and fungal cultures were also performed and yielded negative results at 48 hours.
T71 7639-7767 Sentence denotes On day 9 of hospitalisation (day 14 of illness), the conjunctival swab specimens proved to be positive for SARS-CoV-2 (Ct value:
T72 7768-7772 Sentence denotes 31).
T73 7773-7847 Sentence denotes Ribavirin eye-drops were prescribed to be administered four times per day.
T74 7848-8001 Sentence denotes A slit lamp examination was carried out daily by one experienced ophthalmologist, who wore personal protective equipment recommended by the Shenzhen CDC.
T75 8002-8111 Sentence denotes Conjunctival swabs were collected for repeated SARS-CoV-2 detection on illness days 14, 17 and 19 (figure 2).
T76 8112-8264 Sentence denotes On day 10 of hospitalisation (day 15 of illness), the patient reported no tearing in both eyes, and the redness and foreign body sensation were reduced.
T77 8265-8309 Sentence denotes No tender preauricular lymph node was found.
T78 8310-8427 Sentence denotes On day 11 of hospitalisation (day 16 of illness), he felt no discomfort in both eyes, and only mild redness remained.
T79 8428-8537 Sentence denotes On day 14 of hospitalisation (day 19 of illness), the patient declared that all ocular symptoms had resolved.
T80 8538-8692 Sentence denotes A slit lamp examination demonstrated reduction of bilateral conjunctival injection, as well as follicles on the inferior palpebral conjunctiva (figure 3).
T81 8693-8823 Sentence denotes The conjunctival swabs initially collected from this patient on day 13 of his illness were positive for SARS-CoV-2 RNA (figure 2).
T82 8824-8976 Sentence denotes A Ct value of 31 indicated moderate quantity of virus in the conjunctival swabs, but was much lower than what was found in the nasopharyngeal (Ct value:
T83 8977-9005 Sentence denotes 23.52) and sputum (Ct value:
T84 9006-9020 Sentence denotes 25) specimens.
T85 9021-9128 Sentence denotes Conjunctival specimens obtained on day 14 were still positive for SARS-CoV-2 RNA with the same Ct value 31.
T86 9129-9202 Sentence denotes On day 17 of illness, the conjunctival swabs remained positive (Ct value:
T87 9203-9250 Sentence denotes 37.67) but showed a trend of decreasing levels.
T88 9251-9325 Sentence denotes The conjunctival samples tested negative for SARS-CoV-2 on illness day 19.
T89 9327-9337 Sentence denotes Discussion
T90 9338-9443 Sentence denotes We recorded the ocular complications of a patient with confirmed COVID-19 after 13 days of illness onset.
T91 9444-9530 Sentence denotes The clinical presentation of this case met the criteria of acute viral conjunctivitis.
T92 9531-9600 Sentence denotes It is possible that ribavirin eye-drops helped to treat the symptoms.
T93 9601-9719 Sentence denotes The conjunctival swabs tested positive for SARS-CoV-2 RNA for at least 5 days with the Ct values gradually increasing.
T94 9720-9810 Sentence denotes However, the detection was much lower in conjunctival swabs than in respiratory specimens.
T95 9811-10029 Sentence denotes This case illustrates several aspects of ocular complications of COVID-19, including the full clinical course of ocular manifestations and the dynamic changes of SARS-CoV-2 viral detection in conjunctival swab samples.
T96 10030-10136 Sentence denotes Currently, our understanding of the possible ocular complications of SARS-CoV-2 infection is very limited.
T97 10137-10703 Sentence denotes Guangfa Wang, an expert on COVID-19, reported that he developed red eyes several days before the onset of SARS-CoV-2 infection.10 A retrospective study tested conjunctival samples for SARS-CoV-2 RNA in 30 infected patients, and the conjunctival samples from one patient were positive for the viral RNA on 3 days after onset.11 The fact that our patient developed acute viral conjunctivitis with positive SARS-CoV-2 tests in conjunctival swab samples indicated that SARS-CoV-2 could indeed cause ocular complications but not necessarily in the early stage of illness.
T98 10704-11031 Sentence denotes ACE 2 (ACE2) is a cellular receptor for SARS-CoV-2.12 Given that ACE2 has also been detected in the human retina,13 vascularised retinal pigment epithelium choroid14 and conjunctival epithelia,15 further clinical studies are needed to more fully evaluate the clinical spectrum of ocular diseases caused by SARS-CoV-2 infection.
T99 11032-11147 Sentence denotes SARS-CoV-2 RNA was detected in conjunctival sac samples obtained from our patient on days 13, 14 and 17 of illness.
T100 11148-11616 Sentence denotes However, a previous report in the scientific literature demonstrated the presence of SARS coronavirus in patients’ tears early in the course of the disease.16 Middle East respiratory syndrome coronavirus (MERS-CoV) RNA was also identified at a high concentration in conjunctival swabs from camels at an early stage of infection.17 Our case indicated that the shedding pattern of SARS-CoV-2 may be different from that of SARS-CoV and MERS-CoV in conjunctival specimens.
T101 11617-11705 Sentence denotes Precaution strategies used in SARS-CoV and MERS-CoV may need to be modified accordingly.
T102 11706-11860 Sentence denotes To our knowledge, this was the first report to determine the presence of the viral RNA over time in the conjunctival specimens of a patient with COVID-19.
T103 11861-11938 Sentence denotes Viral RNA was present in our patient’s conjunctival sacs for at least 5 days.
T104 11939-12044 Sentence denotes The viral RNA levels in conjunctival specimens were dramatically lower than those in respiratory samples.
T105 12045-12201 Sentence denotes More viral RNA in conjunctival sacs (inversely related to Ct value)9 was detected 13 days after onset, soon after the symptom onset of acute conjunctivitis.
T106 12202-12321 Sentence denotes Conjunctival specimens obtained on illness days 13, 14, 17 and 19 showed a trend toward decreasing levels of viral RNA.
T107 12322-12506 Sentence denotes The result suggested that viral loads in conjunctival specimens gradually decrease over time with less potential for transmissibility accompanied by improvement of the ocular symptoms.
T108 12507-12635 Sentence denotes We described the clinical features of acute conjunctivitis occurring 13 days after onset in a patient with SARS-CoV-2 infection.
T109 12636-12870 Sentence denotes This case report highlights the necessity to further understand the full spectrum, duration and natural history of ocular complications associated with SARS-CoV-2 infection to inform clinical treatment and affect precaution practices.
T110 12871-12975 Sentence denotes Our case confirmed that SARS-CoV-2 led to ocular complications, but not in the early stage of infection.
T111 12976-13146 Sentence denotes On the one hand, SARS-CoV-2 in conjunctival specimens might represent a source of spread, particularly with higher viral loads at the acute stage of ocular complications.
T112 13147-13279 Sentence denotes On the other hand, the conjunctiva might not serve as an ideal site for sampling for early diagnostic tests of SARS-CoV-2 infection.
T113 13280-13436 Sentence denotes Further study of virus infectivity specifically within ocular tissues would facilitate a better understanding of the pathogenicity of SARS-CoV-2 in the eyes.
T114 13438-13468 Sentence denotes LC and ML contributed equally.
T115 13469-13503 Sentence denotes LL, GZ and JW contributed equally.
T116 13504-13517 Sentence denotes Contributors:
T117 13518-13546 Sentence denotes Study design: LL, GZ and JW.
T118 13547-13582 Sentence denotes Data collection: LC, MC, ZH and NX.
T119 13583-13642 Sentence denotes Analysis and interpretation of the data: ZZ, KQ, TH and ML.
T120 13643-13669 Sentence denotes Writing of the report: LC.
T121 13670-13707 Sentence denotes Revision of the draft: LC, ZZ and GZ.
T122 13708-13811 Sentence denotes Making the decision to submit the paper for publication: LL, GZ, JW, LC, MC, ZH, NX, ZZ, KQ, TH and ML.
T123 13812-13820 Sentence denotes Funding:
T124 13821-13918 Sentence denotes This study was supported by the National Natural Science Foundation of China (Grant No 81900877).
T125 13919-13939 Sentence denotes Competing interests:
T126 13940-13954 Sentence denotes None declared.
T127 13955-13987 Sentence denotes Patient consent for publication:
T128 13988-13997 Sentence denotes Obtained.
T129 13998-14014 Sentence denotes Ethics approval:
T130 14015-14109 Sentence denotes Institutional review board approval was obtained from the Third People's Hospital of Shenzhen.
T131 14110-14137 Sentence denotes Provenance and peer review:
T132 14138-14181 Sentence denotes Not commissioned; internally peer reviewed.
T133 14182-14210 Sentence denotes Data availability statement:
T134 14211-14252 Sentence denotes Data are available on reasonable request.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 40-47 Species denotes patient Tax:9606
3 63-93 Disease denotes 2019 novel coronavirus disease MESH:C000657245
9 182-229 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
10 231-241 Species denotes SARS-CoV-2 Tax:2697049
11 279-286 Species denotes patient Tax:9606
12 302-332 Disease denotes 2019 novel coronavirus disease MESH:C000657245
13 334-342 Disease denotes COVID-19 MESH:C000657245
15 346-357 Species denotes Participant Tax:9606
20 592-602 Species denotes SARS-CoV-2 Tax:2697049
21 704-714 Species denotes SARS-CoV-2 Tax:2697049
22 403-411 Disease denotes COVID-19 MESH:C000657245
23 426-446 Disease denotes acute conjunctivitis MESH:D003232
27 1022-1032 Species denotes SARS-CoV-2 Tax:2697049
28 1106-1116 Species denotes SARS-CoV-2 Tax:2697049
29 826-840 Disease denotes conjunctivitis MESH:D003231
35 1130-1140 Species denotes SARS-CoV-2 Tax:2697049
36 1308-1316 Species denotes patients Tax:9606
37 1192-1212 Disease denotes viral conjunctivitis
38 1299-1307 Disease denotes infected MESH:D007239
39 1355-1364 Disease denotes infection MESH:D007239
48 1842-1857 Species denotes betacoronavirus Tax:694002
49 1859-1906 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
50 1908-1918 Species denotes SARS-CoV-2 Tax:2697049
51 1549-1574 Disease denotes novel coronavirus disease MESH:C000657245
52 1576-1584 Disease denotes COVID-19 MESH:C000657245
53 1658-1666 Disease denotes COVID-19 MESH:C000657245
54 1724-1759 Disease denotes acute respiratory distress syndrome MESH:D012128
55 1769-1774 Disease denotes death MESH:D003643
65 1921-1932 Species denotes Coronavirus Tax:694448
66 2002-2008 Species denotes humans Tax:9606
67 1984-1998 Disease denotes conjunctivitis MESH:D003231
68 2025-2042 Disease denotes retinal disorders MESH:D012164
69 2052-2070 Disease denotes retinal vasculitis MESH:D031300
70 2075-2095 Disease denotes retinal degeneration MESH:D012162
71 2103-2116 Disease denotes blood–retinal MESH:D007022
72 2192-2213 Disease denotes coronavirus infection MESH:D018352
73 2248-2268 Disease denotes SARS-CoV-2 infection MESH:C000657245
79 2419-2426 Species denotes patient Tax:9606
80 2625-2633 Species denotes patients Tax:9606
81 2442-2450 Disease denotes COVID-19 MESH:C000657245
82 2465-2494 Disease denotes bilateral redness of the eyes MESH:D005128
83 2639-2647 Disease denotes COVID-19 MESH:C000657245
85 2902-2909 Species denotes patient Tax:9606
94 3121-3128 Species denotes patient Tax:9606
95 3256-3263 Species denotes patient Tax:9606
96 3338-3348 Species denotes SARS-CoV-2 Tax:2697049
97 3427-3434 Species denotes patient Tax:9606
98 2996-3007 Disease denotes sore throat MESH:D010608
99 3012-3021 Disease denotes diarrhoea MESH:D003967
100 3134-3142 Disease denotes COVID-19 MESH:C000657245
101 3395-3404 Disease denotes emphysema MESH:D004646
107 3551-3558 Species denotes patient Tax:9606
108 3602-3612 Species denotes SARS-CoV-2 Tax:2697049
109 3740-3746 Species denotes People Tax:9606
110 3702-3711 Disease denotes infection MESH:D007239
111 3814-3822 Disease denotes COVID-19 MESH:C000657245
120 4136-4146 Species denotes SARS-CoV-2 Tax:2697049
121 4461-4468 Species denotes patient Tax:9606
122 4666-4676 Species denotes SARS-CoV-2 Tax:2697049
123 4241-4251 Chemical denotes Umifenovir MESH:C086979
124 4288-4297 Chemical denotes Lopinavir MESH:D061466
125 4303-4312 Chemical denotes ritonavir MESH:D019438
126 4597-4608 Disease denotes sore throat MESH:D010608
127 4613-4622 Disease denotes diarrhoea MESH:D003967
130 4949-4957 Disease denotes COVID-19 MESH:C000657245
131 4964-4989 Disease denotes novel coronavirus disease MESH:C000657245
135 5001-5048 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
136 5050-5060 Species denotes SARS-CoV-2 Tax:2697049
137 5137-5144 Species denotes patient Tax:9606
145 5431-5438 Species denotes patient Tax:9606
146 5448-5455 Disease denotes redness MESH:D003117
147 5500-5527 Disease denotes eyes without blurred vision MESH:D014786
148 5766-5797 Disease denotes inferior palpebral conjunctival MESH:D003229
149 5868-5895 Disease denotes subconjunctival haemorrhage MESH:D006470
150 5947-5954 Disease denotes corneal MESH:D003316
151 5975-5987 Disease denotes inflammation MESH:D007249
156 6638-6645 Species denotes patient Tax:9606
157 6595-6604 Chemical denotes ribavirin MESH:D012254
158 6337-6357 Disease denotes viral conjunctivitis
159 6436-6467 Disease denotes inferior palpebral conjunctival MESH:D003229
163 7135-7145 Species denotes SARS-CoV-2 Tax:2697049
164 7308-7318 Species denotes SARS-CoV-2 Tax:2697049
165 6959-6964 Chemical denotes fibre
169 7746-7756 Species denotes SARS-CoV-2 Tax:2697049
170 8049-8059 Species denotes SARS-CoV-2 Tax:2697049
171 7773-7782 Chemical denotes Ribavirin MESH:D012254
177 8166-8173 Species denotes patient Tax:9606
178 8482-8489 Species denotes patient Tax:9606
179 8216-8223 Disease denotes redness MESH:D003117
180 8410-8417 Disease denotes redness MESH:D003117
181 8650-8680 Disease denotes inferior palpebral conjunctiva MESH:C563620
186 8746-8753 Species denotes patient Tax:9606
187 8797-8807 Species denotes SARS-CoV-2 Tax:2697049
188 9087-9097 Species denotes SARS-CoV-2 Tax:2697049
189 9296-9306 Species denotes SARS-CoV-2 Tax:2697049
197 9380-9387 Species denotes patient Tax:9606
198 9644-9654 Species denotes SARS-CoV-2 Tax:2697049
199 9973-9983 Species denotes SARS-CoV-2 Tax:2697049
200 9551-9560 Chemical denotes ribavirin MESH:D012254
201 9403-9411 Disease denotes COVID-19 MESH:C000657245
202 9509-9529 Disease denotes viral conjunctivitis
203 9876-9884 Disease denotes COVID-19 MESH:C000657245
223 10704-10709 Gene denotes ACE 2 Gene:59272
224 10711-10715 Gene denotes ACE2 Gene:59272
225 10769-10773 Gene denotes ACE2 Gene:59272
226 10321-10331 Species denotes SARS-CoV-2 Tax:2697049
227 10351-10359 Species denotes patients Tax:9606
228 10399-10406 Species denotes patient Tax:9606
229 10482-10489 Species denotes patient Tax:9606
230 10541-10551 Species denotes SARS-CoV-2 Tax:2697049
231 10602-10612 Species denotes SARS-CoV-2 Tax:2697049
232 10744-10754 Species denotes SARS-CoV-2 Tax:2697049
233 10804-10809 Species denotes human Tax:9606
234 10099-10119 Disease denotes SARS-CoV-2 infection MESH:C000657245
235 10164-10172 Disease denotes COVID-19 MESH:C000657245
236 10243-10263 Disease denotes SARS-CoV-2 infection MESH:C000657245
237 10342-10350 Disease denotes infected MESH:D007239
238 10506-10526 Disease denotes viral conjunctivitis
239 10820-10867 Disease denotes vascularised retinal pigment epithelium choroid MESH:C536309
240 10984-10999 Disease denotes ocular diseases MESH:D005128
241 11010-11030 Disease denotes SARS-CoV-2 infection MESH:C000657245
254 11032-11042 Species denotes SARS-CoV-2 Tax:2697049
255 11106-11113 Species denotes patient Tax:9606
256 11233-11249 Species denotes SARS coronavirus Tax:694009
257 11253-11261 Species denotes patients Tax:9606
258 11307-11362 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
259 11438-11444 Species denotes camels Tax:9837
260 11527-11537 Species denotes SARS-CoV-2 Tax:2697049
261 11568-11576 Species denotes SARS-CoV Tax:694009
262 11581-11589 Species denotes MERS-CoV Tax:1335626
263 11647-11655 Species denotes SARS-CoV Tax:694009
264 11660-11668 Species denotes MERS-CoV Tax:1335626
265 11466-11475 Disease denotes infection MESH:D007239
270 11838-11845 Species denotes patient Tax:9606
271 11890-11897 Species denotes patient Tax:9606
272 11851-11859 Disease denotes COVID-19 MESH:C000657245
273 12180-12200 Disease denotes acute conjunctivitis MESH:D003232
283 12601-12608 Species denotes patient Tax:9606
284 12895-12905 Species denotes SARS-CoV-2 Tax:2697049
285 12993-13003 Species denotes SARS-CoV-2 Tax:2697049
286 13413-13423 Species denotes SARS-CoV-2 Tax:2697049
287 12551-12565 Disease denotes conjunctivitis MESH:D003231
288 12614-12634 Disease denotes SARS-CoV-2 infection MESH:C000657245
289 12788-12808 Disease denotes SARS-CoV-2 infection MESH:C000657245
290 12965-12974 Disease denotes infection MESH:D007239
291 13258-13278 Disease denotes SARS-CoV-2 infection MESH:C000657245
294 13697-13699 Chemical denotes ZZ
295 13704-13706 Chemical denotes GZ
297 13955-13962 Species denotes Patient Tax:9606
299 14079-14085 Species denotes People Tax:9606

2_test

Id Subject Object Predicate Lexical cue
32265202-15034574-17075858 2009-2010 15034574 denotes 2
32265202-24864013-17075859 2073-2074 24864013 denotes 4
32265202-10967058-17075860 2097-2098 10967058 denotes 6
32265202-11585619-17075861 2135-2136 11585619 denotes 7
32265202-32074444-17075862 7537-7538 32074444 denotes 9
32265202-32035510-17075863 10264-10266 32035510 denotes 10
32265202-32015507-17075864 10755-10757 32015507 denotes 12
32265202-17591902-17075865 10817-10819 17591902 denotes 13
32265202-8814748-17075866 10867-10869 8814748 denotes 14
32265202-15205225-17075867 11304-11306 15205225 denotes 16
32265202-25810418-17075868 11476-11478 25810418 denotes 17
32265202-32074444-17075869 12112-12113 32074444 denotes 9