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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 949-953 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T17 1592-1596 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T138 3153-3161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T139 3435-3448 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T243 88-89 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T244 174-179 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T245 372-377 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T246 698-708 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T247 829-834 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T248 866-876 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T249 1000-1005 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T250 1084-1089 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T251 1631-1638 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T252 2846-2849 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T253 2877-2879 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T254 3010-3012 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T255 3253-3258 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 1675-1680 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945|http://purl.obolibrary.org/obo/HP_0001945
T11 1804-1809 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945|http://purl.obolibrary.org/obo/HP_0001945
T12 1813-1822 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246|http://purl.obolibrary.org/obo/HP_0031246
T10 1675-1680 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945|http://purl.obolibrary.org/obo/HP_0001945
T11 1804-1809 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945|http://purl.obolibrary.org/obo/HP_0001945
T12 1813-1822 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246|http://purl.obolibrary.org/obo/HP_0031246

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T534 0-50 Sentence denotes Encouraging social distancing in local communities
T535 51-192 Sentence denotes Recent studies suggest that there is a large proportion of asymptomatic or mild-symptomatic cases, who can also spread the virus (Dong et al.
T536 193-214 Sentence denotes 2020; Mizumoto et al.
T537 215-236 Sentence denotes 2020; Nishiura et al.
T538 237-254 Sentence denotes 2020; Wang et al.
T539 255-262 Sentence denotes 2020a).
T540 263-378 Sentence denotes Thus, maintaining social distance is of crucial importance in order to curtail the local transmission of the virus.
T541 379-561 Sentence denotes The period from January 24 to 31, 2020, is the traditional Chinese Spring Festival holiday, when families are supposed to get together so that inter-city travel is usually much less.
T542 562-709 Sentence denotes People were frequently reminded by official media (via TV news and phone messages) and social media to stay at home and avoid gathering activities.
T543 710-842 Sentence denotes On January 26, China State Council extended this holiday to February 2 to delay people’s return travel and curtail the virus spread.
T544 843-1013 Sentence denotes Nevertheless, economic activities are still supposed to resume after the spring festival, bringing people back to workplaces, which may increase the risk of virus spread.
T545 1014-1305 Sentence denotes To help local residents keep social distance and decrease the risk of virus transmissions, many cities started to implement the “closed management of communities” and “family outdoor restrictions” policies since late January (Table 7), encouraging residents to restrict nonessential travels.
T546 1306-1762 Sentence denotes From January 28 to February 20, more than 250 prefecture-level cities in China implemented “closed management of communities,” which typically includes (1) keeping only one entrance for each community, (2) allowing only community residents to enter and exit the community, (3) checking body temperature for each entrant, (4) testing and quarantining cases that exhibit fever immediately, and (5) tracing and quarantining close contacts of suspicious cases.
T547 1763-1927 Sentence denotes Meanwhile, residents who had symptoms of fever or dry cough were required to report to the community and were quarantined and treated in special medical facilities.
T548 1928-2215 Sentence denotes Furthermore, local governments of 127 cities also imposed more stringent “family outdoor restrictions”—residents are confined or strongly encouraged to stay at home with limited exceptions, e.g., only one person in each family may go out for shopping for necessities once every 2 days24.
T549 2216-2333 Sentence denotes Exit permits were usually distributed to each family in advance and recollected when residents reenter the community.
T550 2334-2394 Sentence denotes Contacts of those patients were also traced and quarantined.
T551 2395-2551 Sentence denotes Table 7 summarizes the number of cities that had imposed “closed management of communities” or “family outdoor restrictions” by different dates in February.
T552 2552-2626 Sentence denotes Table 7 Number of cities with local quarantine measures by different dates
T553 2627-2692 Sentence denotes Date Closed management of communities Family outdoor restrictions
T554 2693-2708 Sentence denotes 2020-02-01 10 1
T555 2709-2724 Sentence denotes 2020-02-02 20 6
T556 2725-2741 Sentence denotes 2020-02-03 33 16
T557 2742-2758 Sentence denotes 2020-02-04 63 38
T558 2759-2776 Sentence denotes 2020-02-05 111 63
T559 2777-2794 Sentence denotes 2020-02-06 155 88
T560 2795-2812 Sentence denotes 2020-02-07 179 92
T561 2813-2830 Sentence denotes 2020-02-08 187 98
T562 2831-2849 Sentence denotes 2020-02-09 196 102
T563 2850-2868 Sentence denotes 2020-02-10 215 104
T564 2869-2887 Sentence denotes 2020-02-11 227 105
T565 2888-2906 Sentence denotes 2020-02-12 234 108
T566 2907-2925 Sentence denotes 2020-02-13 234 109
T567 2926-2944 Sentence denotes 2020-02-14 235 111
T568 2945-2963 Sentence denotes 2020-02-15 237 111
T569 2964-2982 Sentence denotes 2020-02-16 237 122
T570 2983-3001 Sentence denotes 2020-02-17 237 122
T571 3002-3020 Sentence denotes 2020-02-18 238 122
T572 3021-3039 Sentence denotes 2020-02-19 238 122
T573 3040-3059 Sentence denotes 2020-02-20‡ 241 123
T574 3060-3113 Sentence denotes ‡No new cities adopt these measures after February 20
T575 3114-3278 Sentence denotes In order to help inform evidence-based COVID-19 control measures, we examine the effect of these local quarantine measures in reducing the virus transmission rates.
T576 3279-3471 Sentence denotes Dummy variables for the presence of closed management of communities or family outdoor restrictions are created, and they are interacted with the number of infections in the preceding 2 weeks.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
345 562-568 Species denotes People Tax:9606
346 790-796 Species denotes people Tax:9606
347 942-948 Species denotes people Tax:9606
352 2352-2360 Species denotes patients Tax:9606
353 1675-1680 Disease denotes fever MESH:D005334
354 1804-1809 Disease denotes fever MESH:D005334
355 1813-1822 Disease denotes dry cough MESH:D003371
358 3153-3161 Disease denotes COVID-19 MESH:C000657245
359 3435-3445 Disease denotes infections MESH:D007239