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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 1172-1180 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542
T5 7878-7883 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T6 8057-8065 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542
T7 8746-8751 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T8 9704-9712 Body_part denotes appendix http://purl.org/sig/ont/fma/fma14542
T9 10076-10084 Body_part denotes Appendix http://purl.org/sig/ont/fma/fma14542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 56-64 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 150-158 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 1231-1239 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 1335-1343 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T62 1442-1450 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 1671-1679 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 1813-1821 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 1892-1900 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 5435-5443 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 5987-5995 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 6087-6095 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 6174-6182 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 6344-6354 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T71 6822-6830 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 7168-7178 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T73 9427-9440 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T80 559-560 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 814-815 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 820-821 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T83 1133-1134 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T84 1139-1140 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T85 1181-1182 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T86 1525-1526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1752-1753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 2348-2349 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 2395-2396 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 2442-2443 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 3577-3580 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T92 3893-3896 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T93 4449-4452 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T94 4760-4763 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T95 5053-5065 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T96 5671-5672 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 6039-6051 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T98 6143-6148 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T99 6152-6157 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T100 6386-6396 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T101 6401-6406 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T102 6505-6510 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T103 6526-6531 http://purl.obolibrary.org/obo/CLO_0007373 denotes Lowen
T104 6553-6558 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T105 6696-6701 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T106 6794-6804 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T107 6874-6879 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T108 6927-6939 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T109 6962-6967 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T110 6971-6976 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T111 7060-7065 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T112 7490-7502 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T113 7688-7700 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T114 7811-7816 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T115 7844-7856 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T116 7878-7883 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T117 7878-7883 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T118 7941-7953 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T119 8172-8175 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T120 8257-8260 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T121 8472-8475 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T122 8558-8561 http://purl.obolibrary.org/obo/CLO_0050236 denotes lag
T123 8733-8738 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T124 8746-8751 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T125 8746-8751 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T126 8792-8804 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T127 9629-9641 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumental
T128 9758-9768 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrument
T129 10085-10086 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T114 0-4 Sentence denotes Data
T115 6-15 Sentence denotes Variables
T116 16-205 Sentence denotes January 19, 2020, is the first day that COVID-19 cases were reported outside of Wuhan, so we collect the daily number of new cases of COVID-19 for 305 cities from January 19 to February 29.
T117 206-287 Sentence denotes All these data are reported by 32 provincial-level Health Commissions in China10.
T118 288-438 Sentence denotes Figure 2 shows the time patterns of daily confirmed new cases in Wuhan, in Hubei province outside Wuhan, and in non-Hubei provinces of mainland China.
T119 439-659 Sentence denotes Because Hubei province started to include clinically diagnosed cases into new confirmed cases on February 12, we notice a spike in the number of new cases in Wuhan and other cities in Hubei province on this day (Fig. 2).
T120 660-769 Sentence denotes The common effects of such changes in case definitions on other cities can be absorbed by time fixed effects.
T121 770-859 Sentence denotes As robustness checks, we re-estimate models A and B without the cities in Hubei province.
T122 860-1141 Sentence denotes In addition, since the number of clinically diagnosed cases at the city level was reported for the days of February 12, 13, and 14, we recalculated the daily number of new cases for the 3 days by removing the clinically diagnosed cases from our data and re-estimate models A and B.
T123 1142-1184 Sentence denotes Our main findings still hold (Appendix B).
T124 1185-1257 Sentence denotes Fig. 2 Number of daily new confirmed cases of COVID-19 in mainland China
T125 1258-1410 Sentence denotes Regarding the explanatory variables, we calculate the number of new cases of COVID-19 in the preceding first and second weeks for each city on each day.
T126 1411-1802 Sentence denotes To estimate the impacts of new COVID-19 cases in other cities, we first calculate the geographic distance between a city and all other cities using the latitudes and longitudes of the centroids of each city and then calculate the weighted sum of the number of COVID-19 new cases in all other cities using the inverse of log distance between a city and each of the other cities as the weight.
T127 1803-1968 Sentence denotes Since the COVID-19 outbreak started from Wuhan, we also calculate the weighted number of COVID-19 new cases in Wuhan using the inverse of log distance as the weight.
T128 1969-2178 Sentence denotes Furthermore, to explore the mediating impact of population flow from Wuhan, we collect the daily population flow index from Baidu that proxies for the total intensity of migration from Wuhan to other cities11.
T129 2179-2295 Sentence denotes Figure 3 plots the Baidu index of population flow out of Wuhan and compares its values this year with those in 2019.
T130 2296-2461 Sentence denotes We then interact the flow index with the share that a destination city takes (Fig. 4) to construct a measure on the population flow from Wuhan to a destination city.
T131 2462-2647 Sentence denotes Other mediating variables include population density, GDP per capita, and the number of doctors at the city level, which we collect from the most recent China city statistical yearbook.
T132 2648-2707 Sentence denotes Table 1 presents the summary statistics of these variables.
T133 2708-2822 Sentence denotes On average, GDP per capita and population density are larger in cities outside Hubei province than those in Hubei.
T134 2823-2902 Sentence denotes Compared with cities in Hubei province, cities outside Hubei have more doctors.
T135 2903-2951 Sentence denotes Fig. 3 Baidu index of population flow from Wuhan
T136 2952-3007 Sentence denotes Fig. 4 Destination shares in population flow from Wuhan
T137 3008-3034 Sentence denotes Table 1 Summary statistics
T138 3035-3059 Sentence denotes Variable N Mean Std dev.
T139 3060-3064 Sentence denotes Min.
T140 3065-3076 Sentence denotes Median Max.
T141 3077-3093 Sentence denotes Non Hubei cities
T142 3094-3114 Sentence denotes City characteristics
T143 3115-3175 Sentence denotes GDP per capita, 10,000RMB 288 5.225 3.025 1.141 4.327 21.549
T144 3176-3246 Sentence denotes Population density, per km2 288 428.881 374.138 9.049 327.115 3444.092
T145 3247-3302 Sentence denotes # of doctors, 10,000 288 1.086 1.138 0.030 0.805 10.938
T146 3303-3339 Sentence denotes Time varying variables, Jan 19–Feb 1
T147 3340-3406 Sentence denotes Daily # of new confirmed cases 4032 1.303 3.608 0.000 0.000 60.000
T148 3407-3481 Sentence denotes Weekly average max. temperature, ∘C 4032 8.520 8.525 − 18.468 7.932 29.833
T149 3482-3549 Sentence denotes Weekly average precipitation, mm 4032 0.238 0.558 0.000 0.033 5.570
T150 3550-3615 Sentence denotes Weekly average wind speed, m/s 4032 2.209 0.842 0.816 2.014 6.386
T151 3616-3652 Sentence denotes Time varying variables, Feb 1–Feb 29
T152 3653-3720 Sentence denotes Daily # of new confirmed cases 8064 0.927 3.461 0.000 0.000 201.000
T153 3721-3797 Sentence denotes Weekly average max. temperature, ∘C 8064 11.909 7.983 − 18.032 12.814 28.791
T154 3798-3865 Sentence denotes Weekly average precipitation, mm 8064 0.193 0.491 0.000 0.027 5.432
T155 3866-3931 Sentence denotes Weekly average wind speed, m/s 8064 2.461 0.913 0.654 2.352 7.129
T156 3932-3973 Sentence denotes Cities in Hubei province, excluding Wuhan
T157 3974-3994 Sentence denotes City characteristics
T158 3995-4053 Sentence denotes GDP per capita, 10,000RMB 16 4.932 1.990 2.389 4.306 8.998
T159 4054-4123 Sentence denotes Population density, per km2 16 416.501 220.834 24.409 438.820 846.263
T160 4124-4177 Sentence denotes # of doctors, 10,000 16 0.698 0.436 0.017 0.702 1.393
T161 4178-4214 Sentence denotes Time varying variables, Jan 19–Feb 1
T162 4215-4283 Sentence denotes Daily # of new confirmed cases 224 22.165 35.555 0.000 7.000 276.000
T163 4284-4354 Sentence denotes Weekly average max. temperature, ∘C 224 8.709 1.602 1.278 8.905 10.889
T164 4355-4421 Sentence denotes Weekly average precipitation, mm 224 0.261 0.313 0.000 0.160 1.633
T165 4422-4486 Sentence denotes Weekly average wind speed, m/s 224 1.970 0.600 0.893 1.975 3.439
T166 4487-4523 Sentence denotes Time varying variables, Feb 1–Feb 29
T167 4524-4592 Sentence denotes Daily # of new confirmed cases 448 28.871 51.793 0.000 8.000 424.000
T168 4593-4665 Sentence denotes Weekly average max. temperature, ∘C 448 14.569 2.985 1.452 14.448 23.413
T169 4666-4732 Sentence denotes Weekly average precipitation, mm 448 0.201 0.233 0.000 0.133 1.535
T170 4733-4797 Sentence denotes Weekly average wind speed, m/s 448 2.063 0.648 0.705 2.070 4.174
T171 4798-4881 Sentence denotes Variables of the city characteristics are obtained from City Statistical Yearbooks.
T172 4882-4938 Sentence denotes Time varying variables are observed daily for each city.
T173 4939-5008 Sentence denotes Weekly average weather variables are averages over the preceding week
T174 5009-5105 Sentence denotes We rely on meteorological data to construct instrumental variables for the endogenous variables.
T175 5106-5364 Sentence denotes The National Oceanic and Atmospheric Administration (NOAA) provides average, maximum, and minimum temperatures, air pressure, average and maximum wind speeds, precipitation, snowfall amount, and dew point for 362 weather stations at the daily level in China.
T176 5365-5633 Sentence denotes To merge the meteorological variables with the number of new cases of COVID-19, we first calculate daily weather variables for each city on each day from 2019 December to 2020 February from station-level weather records following the inverse distance weighting method.
T177 5634-5816 Sentence denotes Specifically, for each city, we draw a circle of 100 km from the city’s centroid and calculate the weighted average daily weather variables using stations within the 100-km circle12.
T178 5817-5911 Sentence denotes We use the inverse of the distance between the city’s centroid and each station as the weight.
T179 5912-6024 Sentence denotes Second, we match the daily weather variables to the number of new cases of COVID-19 based on city name and date.
T180 6026-6061 Sentence denotes Selection of instrumental variables
T181 6062-6142 Sentence denotes The transmission rate of COVID-19 may be affected by many environmental factors.
T182 6143-6268 Sentence denotes Human-to-human transmission of COVID-19 is mostly through droplets and contacts (National Health Commission of the PRC 2020).
T183 6269-6421 Sentence denotes Weather conditions such as rainfall, wind speed, and temperature may shape infections via their influences on social activities and virus transmissions.
T184 6422-6548 Sentence denotes For instance, increased precipitation results in higher humidity, which may weaken virus transmissions (Lowen and Steel 2014).
T185 6549-6613 Sentence denotes The virus may survive longer with lower temperature (Wang et al.
T186 6614-6634 Sentence denotes 2020b; Puhani 2020).
T187 6635-6716 Sentence denotes Greater wind speed and therefore ventilated air may decrease virus transmissions.
T188 6717-6805 Sentence denotes In addition, increased rainfall and lower temperature may also reduce social activities.
T189 6806-6947 Sentence denotes Newly confirmed COVID-19 cases typically arise from contracting the virus within 2 weeks in the past (e.g., World Health Organization 2020b).
T190 6948-7123 Sentence denotes The extent of human-to-human transmission is determined by the number of people who have already contracted the virus and the environmental conditions within the next 2 weeks.
T191 7124-7414 Sentence denotes Conditional on the number of people who are infectious and environmental conditions in the previous first and second weeks, it is plausible that weather conditions further in the past, i.e., in the previous third and fourth weeks, should not directly affect the number of current new cases.
T192 7415-7639 Sentence denotes Based on the existing literature, we select weather characteristics as the instrumental variables, which include daily maximum temperature, precipitation, wind speed, and the interaction between precipitation and wind speed.
T193 7640-7789 Sentence denotes We then regress the endogenous variables on the instrumental variables, contemporaneous weather controls, city, date, and city by week fixed effects.
T194 7790-7977 Sentence denotes Table 2 shows that F-tests on the coefficients of the instrumental variables all reject joint insignificance, which confirms that overall the selected instrumental variables are not weak.
T195 7978-8066 Sentence denotes The coefficients of the first stage regressions are reported in Table 9 in the appendix.
T196 8067-8094 Sentence denotes Table 2 First stage results
T197 8095-8134 Sentence denotes Jan 19–Feb 29 Jan 19–Feb 1 Feb 2–Feb 29
T198 8135-8143 Sentence denotes Own city
T199 8144-8199 Sentence denotes Average # new cases, 1-week lag F stat 11.41 4.02 17.28
T200 8200-8228 Sentence denotes p value 0.0000 0.0000 0.0000
T201 8229-8283 Sentence denotes Average # new cases, 2-week lag F stat 8.46 5.66 10.25
T202 8284-8312 Sentence denotes p value 0.0000 0.0000 0.0000
T203 8313-8374 Sentence denotes Average # new cases, previous 14 days F stat 18.37 7.72 21.69
T204 8375-8403 Sentence denotes p value 0.0000 0.0000 0.0000
T205 8404-8443 Sentence denotes Other cities, inverse distance weighted
T206 8444-8500 Sentence denotes Average # new cases, 1-week lag F stat 19.10 36.29 17.58
T207 8501-8529 Sentence denotes p value 0.0000 0.0000 0.0000
T208 8530-8586 Sentence denotes Average # new cases, 2-week lag F stat 36.32 19.94 37.31
T209 8587-8615 Sentence denotes p value 0.0000 0.0000 0.0000
T210 8616-8678 Sentence denotes Average # new cases, previous 14 days F stat 47.08 33.45 46.22
T211 8679-8707 Sentence denotes p value 0.0000 0.0000 0.0000
T212 8708-8868 Sentence denotes This table reports the F-tests on the joint significance of the coefficients on the instrumental variables (IV) that are excluded from the estimation equations.
T213 8869-9152 Sentence denotes Our IV include weekly averages of daily maximum temperature, precipitation, wind speed, and the interaction between precipitation and wind speed, during the preceding third and fourth weeks, and the averages of these variables in other cities weighted by the inverse of log distance.
T214 9153-9326 Sentence denotes For each F statistic, the variable in the corresponding row is the dependent variable, and the time window in the corresponding column indicates the time span of the sample.
T215 9327-9608 Sentence denotes Each regression also includes 1- and 2-week lags of these weather variables, weekly averages of new infections in the preceding first and second weeks in Wuhan which are interacted with the inverse log distance or the population flow, and city, date and city by week fixed effects.
T216 9609-9712 Sentence denotes Coefficients on the instrumental variables for the full sample are reported in Table 15 in the appendix
T217 9713-9826 Sentence denotes We also need additional weather variables to instrument the adoption of public health measures at the city level.
T218 9827-10050 Sentence denotes Since there is no theoretical guidance from the existing literature, we implement the Cluster-Lasso method of Belloni et al. (2016) and Ahrens et al. (2019) to select weather characteristics that have good predictive power.
T219 10051-10087 Sentence denotes Details are displayed in Appendix A.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
155 1231-1239 Disease denotes COVID-19 MESH:C000657245
158 56-64 Disease denotes COVID-19 MESH:C000657245
159 150-158 Disease denotes COVID-19 MESH:C000657245
163 1335-1343 Disease denotes COVID-19 MESH:C000657245
164 1442-1450 Disease denotes COVID-19 MESH:C000657245
165 1671-1679 Disease denotes COVID-19 MESH:C000657245
169 2720-2723 Chemical denotes GDP MESH:D006153
170 1813-1821 Disease denotes COVID-19 MESH:C000657245
171 1892-1900 Disease denotes COVID-19 MESH:C000657245
174 5435-5443 Disease denotes COVID-19 MESH:C000657245
175 5987-5995 Disease denotes COVID-19 MESH:C000657245
186 6143-6148 Species denotes Human Tax:9606
187 6152-6157 Species denotes human Tax:9606
188 6962-6967 Species denotes human Tax:9606
189 6971-6976 Species denotes human Tax:9606
190 7021-7027 Species denotes people Tax:9606
191 7153-7159 Species denotes people Tax:9606
192 6087-6095 Disease denotes COVID-19 MESH:C000657245
193 6174-6182 Disease denotes COVID-19 MESH:C000657245
194 6344-6354 Disease denotes infections MESH:D007239
195 6822-6830 Disease denotes COVID-19 MESH:C000657245
197 8116-8127 Gene denotes Feb 1 Feb 2 Gene:2233
199 9427-9437 Disease denotes infections MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32395017-24789791-64435797 6542-6546 24789791 denotes 2014