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PMC:7205724 / 5936-6626 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
212 553-565 Species denotes Hendra virus Tax:63330
213 567-575 Species denotes SARS-CoV Tax:694009
214 577-592 Species denotes influenza virus Tax:11309
215 611-616 Species denotes HIV-1 Tax:11676
216 622-637 Species denotes West Nile virus Tax:11082
217 678-689 Species denotes Ebola virus Tax:205488
218 18-25 Chemical denotes glycans MESH:D011134
219 30-38 Chemical denotes N-linked
220 43-59 Chemical denotes O-linked glycans
221 143-152 Chemical denotes N-glycans
222 194-203 Chemical denotes O-glycans
223 205-214 Chemical denotes N-glycans
224 244-254 Chemical denotes asparagine MESH:D001216
225 256-259 Chemical denotes Asn MESH:D001216
226 271-274 Chemical denotes Asn MESH:D001216
227 302-309 Chemical denotes proline MESH:D011392
228 311-314 Chemical denotes Ser MESH:D012694
229 318-321 Chemical denotes Thr MESH:D013912
230 362-381 Chemical denotes N-acetylglucosamine
231 383-392 Chemical denotes O-glycans
232 424-430 Chemical denotes serine MESH:D012694
233 432-435 Chemical denotes Ser MESH:D012694
234 441-450 Chemical denotes threonine MESH:D013912
235 452-455 Chemical denotes Thr MESH:D013912
236 488-510 Chemical denotes N-acetyl galactosamine
237 512-518 Chemical denotes GalNAc
238 534-543 Chemical denotes N-glycans
239 647-656 Chemical denotes O-glycans
240 336-348 Disease denotes N-glycosidic MESH:C563601
241 594-609 Disease denotes hepatitis virus MESH:D006525

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 362-381 https://glytoucan.org/Structures/Glycans/G64581RP denotes N-acetylglucosamine
T2 488-510 https://glytoucan.org/Structures/Glycans/G27025MB denotes N-acetyl galactosamine

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T36 84-97 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T37 233-243 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T38 279-290 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T39 302-309 Body_part denotes proline http://purl.org/sig/ont/fma/fma82761
T40 311-314 Body_part denotes Ser http://purl.org/sig/ont/fma/fma82764
T41 318-321 Body_part denotes Thr http://purl.org/sig/ont/fma/fma82765
T42 362-381 Body_part denotes N-acetylglucosamine http://purl.org/sig/ont/fma/fma82787
T43 413-423 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T44 424-430 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T45 432-435 Body_part denotes Ser http://purl.org/sig/ont/fma/fma82764
T46 441-450 Body_part denotes threonine http://purl.org/sig/ont/fma/fma82765
T47 452-455 Body_part denotes Thr http://purl.org/sig/ont/fma/fma82765
T48 488-510 Body_part denotes N-acetyl galactosamine http://purl.org/sig/ont/fma/fma82786
T49 611-614 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 567-575 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 577-586 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 587-603 Disease denotes virus, hepatitis http://purl.obolibrary.org/obo/MONDO_0006011
T45 594-603 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T46 678-683 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T72 560-565 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T73 587-592 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 604-609 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T75 632-637 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T76 684-689 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T39 18-25 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T40 52-59 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T41 84-97 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T42 143-152 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T43 145-152 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T44 194-203 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T45 196-203 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T46 205-214 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T47 207-214 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T48 233-243 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T49 233-238 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T50 239-243 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T51 244-254 Chemical denotes asparagine http://purl.obolibrary.org/obo/CHEBI_22653
T52 256-259 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T55 271-274 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T58 279-290 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T59 279-284 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T60 285-290 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T61 302-309 Chemical denotes proline http://purl.obolibrary.org/obo/CHEBI_17203|http://purl.obolibrary.org/obo/CHEBI_26271
T63 311-314 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999|http://purl.obolibrary.org/obo/CHEBI_17822
T66 318-321 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013|http://purl.obolibrary.org/obo/CHEBI_26986
T69 362-381 Chemical denotes N-acetylglucosamine http://purl.obolibrary.org/obo/CHEBI_28009|http://purl.obolibrary.org/obo/CHEBI_59640
T71 383-392 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T72 385-392 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T73 413-423 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T74 413-418 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T75 419-423 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T76 424-430 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T77 432-435 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999|http://purl.obolibrary.org/obo/CHEBI_17822
T80 441-450 Chemical denotes threonine http://purl.obolibrary.org/obo/CHEBI_26986
T81 452-455 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013|http://purl.obolibrary.org/obo/CHEBI_26986
T84 488-510 Chemical denotes N-acetyl galactosamine http://purl.obolibrary.org/obo/CHEBI_28800
T85 490-496 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T87 497-510 Chemical denotes galactosamine http://purl.obolibrary.org/obo/CHEBI_24156
T88 512-518 Chemical denotes GalNAc http://purl.obolibrary.org/obo/CHEBI_28037|http://purl.obolibrary.org/obo/CHEBI_28800|http://purl.obolibrary.org/obo/CHEBI_24156
T91 534-543 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T92 536-543 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T93 647-656 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T94 649-656 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T34 560-565 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 587-592 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T36 604-609 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 632-637 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38 684-689 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 18-25 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T27 52-59 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T28 84-97 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T29 143-152 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T30 194-203 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T31 205-214 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T32 233-243 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T33 244-254 Chemical denotes asparagine http://purl.obolibrary.org/obo/CHEBI_22653
T34 256-259 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T37 271-274 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T40 279-290 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T41 302-309 Chemical denotes proline http://purl.obolibrary.org/obo/CHEBI_17203|http://purl.obolibrary.org/obo/CHEBI_26271
T43 311-314 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999|http://purl.obolibrary.org/obo/CHEBI_17822
T46 318-321 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013|http://purl.obolibrary.org/obo/CHEBI_26986
T49 362-381 Chemical denotes N-acetylglucosamine http://purl.obolibrary.org/obo/CHEBI_28009|http://purl.obolibrary.org/obo/CHEBI_59640
T51 383-392 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T52 413-423 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T53 424-430 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T54 432-435 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999|http://purl.obolibrary.org/obo/CHEBI_17822
T57 441-450 Chemical denotes threonine http://purl.obolibrary.org/obo/CHEBI_26986
T58 452-455 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013|http://purl.obolibrary.org/obo/CHEBI_26986
T61 488-510 Chemical denotes N-acetyl galactosamine http://purl.obolibrary.org/obo/CHEBI_28800
T62 512-518 Chemical denotes GalNAc http://purl.obolibrary.org/obo/CHEBI_28037|http://purl.obolibrary.org/obo/CHEBI_28800|http://purl.obolibrary.org/obo/CHEBI_24156
T65 534-543 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T66 647-656 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T52 553-565 Species denotes Hendra virus NCBItxid:63330
T53 567-575 Species denotes SARS-CoV NCBItxid:694009
T54 577-592 Species denotes influenza virus NCBItxid:11309
T55 594-609 Species denotes hepatitis virus NCBItxid:10407
T56 611-616 Species denotes HIV-1 NCBItxid:11676
T57 622-637 Species denotes West Nile virus NCBItxid:11082
T58 678-689 Species denotes Ebola virus NCBItxid:1570291

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T56 0-60 Sentence denotes Two main types of glycans are N-linked and O-linked glycans.
T57 61-98 Sentence denotes Both are released from glycoproteins.
T58 99-204 Sentence denotes Whereas enzymes fulfill the construction of N-glycans, chemical methods perform the release of O-glycans.
T59 205-382 Sentence denotes N-glycans are linked to the amino acid asparagine (Asn) residues (Asn-any amino acids except for proline- Ser or Thr) utilizing an N-glycosidic bond, mostly N-acetylglucosamine.
T60 383-520 Sentence denotes O-glycans are attached to the amino acid serine (Ser) and threonine (Thr) residues by the addition of an N-acetyl galactosamine (GalNAc).
T61 521-690 Sentence denotes For example, N-glycans exist in Hendra virus, SARS-CoV, influenza virus, hepatitis virus, HIV-1, and West Nile virus [6], and O-glycans have occurred in the Ebola virus.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
218 18-25 Chemical denotes glycans MESH:D011134
219 30-38 Chemical denotes N-linked
220 43-59 Chemical denotes O-linked glycans
221 143-152 Chemical denotes N-glycans
222 194-203 Chemical denotes O-glycans
223 205-214 Chemical denotes N-glycans
224 244-254 Chemical denotes asparagine MESH:D001216
225 256-259 Chemical denotes Asn MESH:D001216
226 271-274 Chemical denotes Asn MESH:D001216
227 302-309 Chemical denotes proline MESH:D011392
228 311-314 Chemical denotes Ser MESH:D012694
229 318-321 Chemical denotes Thr MESH:D013912
240 336-348 Disease denotes N-glycosidic MESH:C563601
230 362-381 Chemical denotes N-acetylglucosamine
231 383-392 Chemical denotes O-glycans
232 424-430 Chemical denotes serine MESH:D012694
233 432-435 Chemical denotes Ser MESH:D012694
234 441-450 Chemical denotes threonine MESH:D013912
235 452-455 Chemical denotes Thr MESH:D013912
236 488-510 Chemical denotes N-acetyl galactosamine
237 512-518 Chemical denotes GalNAc
238 534-543 Chemical denotes N-glycans
212 553-565 Species denotes Hendra virus Tax:63330
213 567-575 Species denotes SARS-CoV Tax:694009
214 577-592 Species denotes influenza virus Tax:11309
241 594-609 Disease denotes hepatitis virus MESH:D006525
215 611-616 Species denotes HIV-1 Tax:11676
216 622-637 Species denotes West Nile virus Tax:11082
239 647-656 Chemical denotes O-glycans
217 678-689 Species denotes Ebola virus Tax:205488

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T818 84-97 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T975 0-3 CD denotes Two
T976 4-8 JJ denotes main
T977 9-14 NNS denotes types
T978 15-17 IN denotes of
T979 18-25 NNS denotes glycans
T980 26-29 VBP denotes are
T981 30-38 VBN denotes N-linked
T982 39-42 CC denotes and
T983 43-51 JJ denotes O-linked
T984 52-59 NNS denotes glycans
T985 61-65 DT denotes Both
T986 66-69 VBP denotes are
T987 70-78 VBN denotes released
T988 79-83 IN denotes from
T989 84-97 NNS denotes glycoproteins
T990 99-106 IN denotes Whereas
T991 107-114 NNS denotes enzymes
T992 115-122 VBP denotes fulfill
T993 123-126 DT denotes the
T994 127-139 NN denotes construction
T995 140-142 IN denotes of
T996 143-152 NNS denotes N-glycans
T997 152-153 -COMMA- denotes ,
T998 154-162 JJ denotes chemical
T999 163-170 NNS denotes methods
T1000 171-178 VBP denotes perform
T1001 179-182 DT denotes the
T1002 183-190 NN denotes release
T1003 191-193 IN denotes of
T1004 194-203 NNS denotes O-glycans
T1005 205-214 NNS denotes N-glycans
T1006 215-218 VBP denotes are
T1007 219-225 VBN denotes linked
T1008 226-228 TO denotes to
T1009 229-232 DT denotes the
T1010 233-238 JJ denotes amino
T1011 239-243 NN denotes acid
T1012 244-254 NN denotes asparagine
T1013 255-256 -LRB- denotes (
T1014 256-259 NN denotes Asn
T1015 259-260 -RRB- denotes )
T1016 261-269 NNS denotes residues
T1017 270-271 -LRB- denotes (
T1018 271-278 JJ denotes Asn-any
T1019 279-284 NN denotes amino
T1020 285-290 NNS denotes acids
T1021 291-297 IN denotes except
T1022 298-301 IN denotes for
T1023 302-310 NN denotes proline-
T1024 311-314 NN denotes Ser
T1025 315-317 CC denotes or
T1026 318-321 NN denotes Thr
T1027 321-322 -RRB- denotes )
T1028 323-332 VBG denotes utilizing
T1029 333-335 DT denotes an
T1030 336-348 JJ denotes N-glycosidic
T1031 349-353 NN denotes bond
T1032 353-354 -COMMA- denotes ,
T1033 355-361 RB denotes mostly
T1034 362-381 NN denotes N-acetylglucosamine
T1035 383-392 NNS denotes O-glycans
T1036 393-396 VBP denotes are
T1037 397-405 VBN denotes attached
T1038 406-408 TO denotes to
T1039 409-412 DT denotes the
T1040 413-418 JJ denotes amino
T1041 419-423 NN denotes acid
T1042 424-430 NN denotes serine
T1043 431-432 -LRB- denotes (
T1044 432-435 NN denotes Ser
T1045 435-436 -RRB- denotes )
T1046 437-440 CC denotes and
T1047 441-450 NN denotes threonine
T1048 451-452 -LRB- denotes (
T1049 452-455 NN denotes Thr
T1050 455-456 -RRB- denotes )
T1051 457-465 NNS denotes residues
T1052 466-468 IN denotes by
T1053 469-472 DT denotes the
T1054 473-481 NN denotes addition
T1055 482-484 IN denotes of
T1056 485-487 DT denotes an
T1057 488-496 NN denotes N-acetyl
T1058 497-510 NN denotes galactosamine
T1059 511-512 -LRB- denotes (
T1060 512-518 NN denotes GalNAc
T1061 518-519 -RRB- denotes )
T1062 521-524 IN denotes For
T1063 525-532 NN denotes example
T1064 532-533 -COMMA- denotes ,
T1065 534-543 NNS denotes N-glycans
T1066 544-549 VBP denotes exist
T1067 550-552 IN denotes in
T1068 553-559 NNP denotes Hendra
T1069 560-565 NN denotes virus
T1070 565-566 -COMMA- denotes ,
T1071 567-575 NN denotes SARS-CoV
T1072 575-576 -COMMA- denotes ,
T1073 577-586 NN denotes influenza
T1074 587-592 NN denotes virus
T1075 592-593 -COMMA- denotes ,
T1076 594-603 NN denotes hepatitis
T1077 604-609 NN denotes virus
T1078 609-610 -COMMA- denotes ,
T1079 611-616 NN denotes HIV-1
T1080 616-617 -COMMA- denotes ,
T1081 618-621 CC denotes and
T1082 622-626 NNP denotes West
T1083 627-631 NNP denotes Nile
T1084 632-637 NN denotes virus
T1085 638-639 -LRB- denotes [
T1086 639-640 CD denotes 6
T1087 640-641 -RRB- denotes ]
T1088 641-642 -COMMA- denotes ,
T1089 643-646 CC denotes and
T1090 647-656 NNS denotes O-glycans
T1091 657-661 VBP denotes have
T1092 662-670 VBN denotes occurred
T1093 671-673 IN denotes in
T1094 674-677 DT denotes the
T1095 678-683 NNP denotes Ebola
T1096 684-689 NN denotes virus
R968 T977 T975 arg1Of types,Two
R1036 T1042 T1043 arg1Of serine,(
R1037 T1044 T1043 arg2Of Ser,(
R1038 T1045 T1043 arg3Of ),(
R1039 T1042 T1046 arg1Of serine,and
R1040 T1047 T1046 arg2Of threonine,and
R1041 T1051 T1047 arg1Of residues,threonine
R1042 T1047 T1048 arg1Of threonine,(
R1043 T1049 T1048 arg2Of Thr,(
R1044 T1050 T1048 arg3Of ),(
R1045 T1037 T1052 arg1Of attached,by
R1046 T1054 T1052 arg2Of addition,by
R1047 T1054 T1053 arg1Of addition,the
R1048 T1054 T1055 arg1Of addition,of
R1049 T1058 T1055 arg2Of galactosamine,of
R1050 T1058 T1056 arg1Of galactosamine,an
R969 T977 T976 arg1Of types,main
R970 T977 T978 arg1Of types,of
R971 T979 T978 arg2Of glycans,of
R972 T977 T980 arg1Of types,are
R973 T981 T980 arg2Of N-linked,are
R974 T977 T981 arg2Of types,N-linked
R975 T984 T981 arg3Of glycans,N-linked
R976 T984 T982 arg1Of glycans,and
R977 T984 T983 arg1Of glycans,O-linked
R978 T985 T986 arg1Of Both,are
R979 T987 T986 arg2Of released,are
R980 T985 T987 arg2Of Both,released
R981 T987 T988 arg1Of released,from
R982 T989 T988 arg2Of glycoproteins,from
R983 T1000 T990 arg1Of perform,Whereas
R984 T992 T990 arg2Of fulfill,Whereas
R985 T991 T992 arg1Of enzymes,fulfill
R986 T994 T992 arg2Of construction,fulfill
R987 T994 T993 arg1Of construction,the
R988 T994 T995 arg1Of construction,of
R989 T996 T995 arg2Of N-glycans,of
R990 T1000 T997 arg1Of perform,","
R991 T999 T998 arg1Of methods,chemical
R992 T999 T1000 arg1Of methods,perform
R993 T1002 T1000 arg2Of release,perform
R994 T1002 T1001 arg1Of release,the
R995 T1002 T1003 arg1Of release,of
R996 T1004 T1003 arg2Of O-glycans,of
R997 T1005 T1006 arg1Of N-glycans,are
R998 T1007 T1006 arg2Of linked,are
R999 T1005 T1007 arg2Of N-glycans,linked
R1000 T1007 T1008 arg1Of linked,to
R1001 T1016 T1008 arg2Of residues,to
R1002 T1016 T1009 arg1Of residues,the
R1003 T1016 T1010 arg1Of residues,amino
R1004 T1016 T1011 arg1Of residues,acid
R1005 T1016 T1012 arg1Of residues,asparagine
R1006 T1016 T1013 arg1Of residues,(
R1007 T1014 T1013 arg2Of Asn,(
R1008 T1015 T1013 arg3Of ),(
R1009 T1016 T1017 arg1Of residues,(
R1010 T1020 T1017 arg2Of acids,(
R1011 T1027 T1017 arg3Of ),(
R1012 T1020 T1018 arg1Of acids,Asn-any
R1013 T1020 T1019 arg1Of acids,amino
R1014 T1022 T1021 arg1Of for,except
R1015 T1020 T1022 arg1Of acids,for
R1016 T1025 T1022 arg2Of or,for
R1017 T1025 T1023 arg1Of or,proline-
R1018 T1024 T1025 arg1Of Ser,or
R1019 T1026 T1025 arg2Of Thr,or
R1020 T1016 T1028 arg1Of residues,utilizing
R1021 T1031 T1028 arg2Of bond,utilizing
R1022 T1031 T1029 arg1Of bond,an
R1023 T1031 T1030 arg1Of bond,N-glycosidic
R1024 T1031 T1032 arg1Of bond,","
R1025 T1034 T1032 arg2Of N-acetylglucosamine,","
R1026 T1034 T1033 arg1Of N-acetylglucosamine,mostly
R1027 T1035 T1036 arg1Of O-glycans,are
R1028 T1037 T1036 arg2Of attached,are
R1029 T1035 T1037 arg2Of O-glycans,attached
R1030 T1037 T1038 arg1Of attached,to
R1031 T1051 T1038 arg2Of residues,to
R1032 T1051 T1039 arg1Of residues,the
R1033 T1042 T1040 arg1Of serine,amino
R1034 T1042 T1041 arg1Of serine,acid
R1035 T1051 T1042 arg1Of residues,serine
R1051 T1058 T1057 arg1Of galactosamine,N-acetyl
R1052 T1058 T1059 arg1Of galactosamine,(
R1053 T1060 T1059 arg2Of GalNAc,(
R1054 T1061 T1059 arg3Of ),(
R1055 T1089 T1062 arg1Of and,For
R1056 T1063 T1062 arg2Of example,For
R1057 T1089 T1064 arg1Of and,","
R1058 T1065 T1066 arg1Of N-glycans,exist
R1059 T1066 T1067 arg1Of exist,in
R1060 T1081 T1067 arg2Of and,in
R1061 T1069 T1068 arg1Of virus,Hendra
R1062 T1069 T1070 arg1Of virus,","
R1063 T1071 T1070 arg2Of SARS-CoV,","
R1064 T1070 T1072 arg1Of ",",","
R1065 T1074 T1072 arg2Of virus,","
R1066 T1074 T1073 arg1Of virus,influenza
R1067 T1072 T1075 arg1Of ",",","
R1068 T1077 T1075 arg2Of virus,","
R1069 T1077 T1076 arg1Of virus,hepatitis
R1070 T1075 T1078 arg1Of ",",","
R1071 T1079 T1078 arg2Of HIV-1,","
R1072 T1081 T1080 arg1Of and,","
R1073 T1078 T1081 arg1Of ",",and
R1074 T1084 T1081 arg2Of virus,and
R1075 T1083 T1082 arg1Of Nile,West
R1076 T1084 T1083 arg1Of virus,Nile
R1077 T1084 T1085 arg1Of virus,[
R1078 T1086 T1085 arg2Of 6,[
R1079 T1087 T1085 arg3Of ],[
R1080 T1089 T1088 arg1Of and,","
R1081 T1066 T1089 arg1Of exist,and
R1082 T1092 T1089 arg2Of occurred,and
R1083 T1090 T1091 arg1Of O-glycans,have
R1084 T1092 T1091 arg2Of occurred,have
R1085 T1090 T1092 arg1Of O-glycans,occurred
R1086 T1092 T1093 arg1Of occurred,in
R1087 T1096 T1093 arg2Of virus,in
R1088 T1096 T1094 arg1Of virus,the
R1089 T1096 T1095 arg1Of virus,Ebola

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T36 84-97 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T37 233-243 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T38 279-290 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T39 302-309 Body_part denotes proline http://purl.org/sig/ont/fma/fma82761
T40 311-314 Body_part denotes Ser http://purl.org/sig/ont/fma/fma82764
T41 318-321 Body_part denotes Thr http://purl.org/sig/ont/fma/fma82765
T42 362-381 Body_part denotes N-acetylglucosamine http://purl.org/sig/ont/fma/fma82787
T43 413-423 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T44 424-430 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T45 432-435 Body_part denotes Ser http://purl.org/sig/ont/fma/fma82764
T46 441-450 Body_part denotes threonine http://purl.org/sig/ont/fma/fma82765
T47 452-455 Body_part denotes Thr http://purl.org/sig/ont/fma/fma82765
T48 488-510 Body_part denotes N-acetyl galactosamine http://purl.org/sig/ont/fma/fma82786
T49 611-614 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 567-575 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 577-586 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 594-603 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T45 678-683 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 594-603 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T56 0-60 Sentence denotes Two main types of glycans are N-linked and O-linked glycans.
T57 61-98 Sentence denotes Both are released from glycoproteins.
T58 99-204 Sentence denotes Whereas enzymes fulfill the construction of N-glycans, chemical methods perform the release of O-glycans.
T59 205-382 Sentence denotes N-glycans are linked to the amino acid asparagine (Asn) residues (Asn-any amino acids except for proline- Ser or Thr) utilizing an N-glycosidic bond, mostly N-acetylglucosamine.
T60 383-520 Sentence denotes O-glycans are attached to the amino acid serine (Ser) and threonine (Thr) residues by the addition of an N-acetyl galactosamine (GalNAc).
T61 521-690 Sentence denotes For example, N-glycans exist in Hendra virus, SARS-CoV, influenza virus, hepatitis virus, HIV-1, and West Nile virus [6], and O-glycans have occurred in the Ebola virus.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 594-603 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 318-321 https://glytoucan.org/Structures/Glycans/G69371PB denotes Thr
T2 318-321 https://glytoucan.org/Structures/Glycans/G00134PL denotes Thr
T3 318-321 https://glytoucan.org/Structures/Glycans/G52865ZM denotes Thr
T4 318-321 https://glytoucan.org/Structures/Glycans/G50601AY denotes Thr
T5 318-321 https://glytoucan.org/Structures/Glycans/G27898GL denotes Thr
T6 318-321 https://glytoucan.org/Structures/Glycans/G90753WM denotes Thr
T7 318-321 https://glytoucan.org/Structures/Glycans/G57814GP denotes Thr
T8 318-321 https://glytoucan.org/Structures/Glycans/G42918SL denotes Thr
T9 318-321 https://glytoucan.org/Structures/Glycans/G81521LC denotes Thr
T10 318-321 https://glytoucan.org/Structures/Glycans/G19289PT denotes Thr
T11 318-321 https://glytoucan.org/Structures/Glycans/G23779KC denotes Thr
T12 318-321 https://glytoucan.org/Structures/Glycans/G94729UX denotes Thr
T13 318-321 https://glytoucan.org/Structures/Glycans/G49708JS denotes Thr
T14 318-321 https://glytoucan.org/Structures/Glycans/G60349YI denotes Thr
T15 318-321 https://glytoucan.org/Structures/Glycans/G63317ON denotes Thr
T16 318-321 https://glytoucan.org/Structures/Glycans/G71284FA denotes Thr
T17 318-321 https://glytoucan.org/Structures/Glycans/G42091PK denotes Thr
T18 318-321 https://glytoucan.org/Structures/Glycans/G39722QK denotes Thr
T19 318-321 https://glytoucan.org/Structures/Glycans/G76637LW denotes Thr
T20 318-321 https://glytoucan.org/Structures/Glycans/G46130CG denotes Thr
T21 318-321 https://glytoucan.org/Structures/Glycans/G05333AM denotes Thr
T22 318-321 https://glytoucan.org/Structures/Glycans/G77428YW denotes Thr
T23 318-321 https://glytoucan.org/Structures/Glycans/G15142RK denotes Thr
T24 318-321 https://glytoucan.org/Structures/Glycans/G06824UZ denotes Thr
T25 318-321 https://glytoucan.org/Structures/Glycans/G48723MN denotes Thr
T26 318-321 https://glytoucan.org/Structures/Glycans/G35093GE denotes Thr
T27 318-321 https://glytoucan.org/Structures/Glycans/G34845TQ denotes Thr
T28 318-321 https://glytoucan.org/Structures/Glycans/G71815PL denotes Thr
T29 318-321 https://glytoucan.org/Structures/Glycans/G97173UR denotes Thr
T30 318-321 https://glytoucan.org/Structures/Glycans/G53453JD denotes Thr
T31 318-321 https://glytoucan.org/Structures/Glycans/G81407LL denotes Thr
T32 318-321 https://glytoucan.org/Structures/Glycans/G46430YF denotes Thr
T33 452-455 https://glytoucan.org/Structures/Glycans/G69371PB denotes Thr
T34 452-455 https://glytoucan.org/Structures/Glycans/G00134PL denotes Thr
T35 452-455 https://glytoucan.org/Structures/Glycans/G52865ZM denotes Thr
T36 452-455 https://glytoucan.org/Structures/Glycans/G50601AY denotes Thr
T37 452-455 https://glytoucan.org/Structures/Glycans/G27898GL denotes Thr
T38 452-455 https://glytoucan.org/Structures/Glycans/G90753WM denotes Thr
T39 452-455 https://glytoucan.org/Structures/Glycans/G57814GP denotes Thr
T40 452-455 https://glytoucan.org/Structures/Glycans/G42918SL denotes Thr
T41 452-455 https://glytoucan.org/Structures/Glycans/G81521LC denotes Thr
T42 452-455 https://glytoucan.org/Structures/Glycans/G19289PT denotes Thr
T43 452-455 https://glytoucan.org/Structures/Glycans/G23779KC denotes Thr
T44 452-455 https://glytoucan.org/Structures/Glycans/G94729UX denotes Thr
T45 452-455 https://glytoucan.org/Structures/Glycans/G49708JS denotes Thr
T46 452-455 https://glytoucan.org/Structures/Glycans/G60349YI denotes Thr
T47 452-455 https://glytoucan.org/Structures/Glycans/G63317ON denotes Thr
T48 452-455 https://glytoucan.org/Structures/Glycans/G71284FA denotes Thr
T49 452-455 https://glytoucan.org/Structures/Glycans/G42091PK denotes Thr
T50 452-455 https://glytoucan.org/Structures/Glycans/G39722QK denotes Thr
T51 452-455 https://glytoucan.org/Structures/Glycans/G76637LW denotes Thr
T52 452-455 https://glytoucan.org/Structures/Glycans/G46130CG denotes Thr
T53 452-455 https://glytoucan.org/Structures/Glycans/G05333AM denotes Thr
T54 452-455 https://glytoucan.org/Structures/Glycans/G77428YW denotes Thr
T55 452-455 https://glytoucan.org/Structures/Glycans/G15142RK denotes Thr
T56 452-455 https://glytoucan.org/Structures/Glycans/G06824UZ denotes Thr
T57 452-455 https://glytoucan.org/Structures/Glycans/G48723MN denotes Thr
T58 452-455 https://glytoucan.org/Structures/Glycans/G35093GE denotes Thr
T59 452-455 https://glytoucan.org/Structures/Glycans/G34845TQ denotes Thr
T60 452-455 https://glytoucan.org/Structures/Glycans/G71815PL denotes Thr
T61 452-455 https://glytoucan.org/Structures/Glycans/G97173UR denotes Thr
T62 452-455 https://glytoucan.org/Structures/Glycans/G53453JD denotes Thr
T63 452-455 https://glytoucan.org/Structures/Glycans/G81407LL denotes Thr
T64 452-455 https://glytoucan.org/Structures/Glycans/G46430YF denotes Thr
T65 497-510 http://rdf.glyconavi.org/CarTNa/CarTNa205/trivialname denotes galactosamine
T66 512-518 https://glytoucan.org/Structures/Glycans/G23425WZ denotes GalNAc
T67 512-518 https://glytoucan.org/Structures/Glycans/G02874VH denotes GalNAc
T68 512-518 https://glytoucan.org/Structures/Glycans/G99699DW denotes GalNAc
T69 512-518 https://glytoucan.org/Structures/Glycans/G22074RM denotes GalNAc
T70 512-518 https://glytoucan.org/Structures/Glycans/G48535VZ denotes GalNAc
T71 512-518 https://glytoucan.org/Structures/Glycans/G39738WL denotes GalNAc
T72 512-518 https://glytoucan.org/Structures/Glycans/G42313WU denotes GalNAc
T73 512-518 https://glytoucan.org/Structures/Glycans/G00393CK denotes GalNAc
T74 512-518 https://glytoucan.org/Structures/Glycans/G46880SB denotes GalNAc
T75 512-518 https://glytoucan.org/Structures/Glycans/G42649EX denotes GalNAc
T76 512-518 https://glytoucan.org/Structures/Glycans/G75599IR denotes GalNAc
T77 512-518 https://glytoucan.org/Structures/Glycans/G58985MU denotes GalNAc
T78 512-518 https://glytoucan.org/Structures/Glycans/G92517PO denotes GalNAc
T79 512-518 https://glytoucan.org/Structures/Glycans/G41473NX denotes GalNAc
T80 512-518 https://glytoucan.org/Structures/Glycans/G71089RB denotes GalNAc
T81 512-518 https://glytoucan.org/Structures/Glycans/G88512YL denotes GalNAc
T82 512-518 https://glytoucan.org/Structures/Glycans/G73485GZ denotes GalNAc
T83 512-518 https://glytoucan.org/Structures/Glycans/G61406KC denotes GalNAc
T84 512-518 https://glytoucan.org/Structures/Glycans/G34412GZ denotes GalNAc
T85 512-518 https://glytoucan.org/Structures/Glycans/G61442IL denotes GalNAc
T86 512-518 https://glytoucan.org/Structures/Glycans/G93729MV denotes GalNAc
T87 512-518 https://glytoucan.org/Structures/Glycans/G92144AE denotes GalNAc
T88 512-518 http://rdf.glyconavi.org/CarTNa/CarTNa205/trivialname denotes GalNAc

2_test

Id Subject Object Predicate Lexical cue
32413736-17398101-48112968 639-640 17398101 denotes 6
T80973 639-640 17398101 denotes 6