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PMC:7205724 / 4857-5309 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
165 305-310 Gene denotes furin Gene:5045
166 73-79 Species denotes humans Tax:9606
167 171-197 Species denotes avian paramyxovirus type 7 Tax:622416
168 199-205 Species denotes APMV-7 Tax:622416
169 291-297 Species denotes APMV-7 Tax:622416
170 397-404 Species denotes chicken Tax:9031
171 442-451 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T26 248-255 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 373-377 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 442-451 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T56 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 35-36 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 37-42 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T59 73-79 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T60 350-359 http://purl.obolibrary.org/obo/CL_0000228 denotes syncytium
T61 373-377 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T62 397-404 http://purl.obolibrary.org/obo/NCBITaxon_9031 denotes chicken
T63 420-425 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T30 248-255 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T5 378-386 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes cultures http://purl.bioontology.org/ontology/MEDDRA/10061447

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T17 21-25 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T18 37-42 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 58-68 http://purl.obolibrary.org/obo/IDO_0000450 denotes pathogenic
T20 96-106 http://purl.obolibrary.org/obo/IDO_0000450 denotes pathogenic
T21 265-269 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T22 334-345 http://purl.obolibrary.org/obo/IDO_0000608 denotes replication
T23 373-377 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T24 420-425 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 442-451 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 248-255 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T47 73-79 Species denotes humans NCBItxid:9605
T48 171-197 Species denotes avian paramyxovirus type 7 NCBItxid:2560317
T49 199-205 Species denotes APMV-7 NCBItxid:2560317
T50 291-297 Species denotes APMV-7 NCBItxid:2560317
T51 397-404 Species denotes chicken NCBItxid:9031

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T46 0-125 Sentence denotes A polybasic cleavage site explains a virus that is highly-pathogenic for humans while it is low-pathogenic for other species.
T47 126-274 Sentence denotes For example, using reverse genetic tools, an avian paramyxovirus type 7 (APMV-7) was developed by mutating the fusion (F) protein cleavage site [4].
T48 275-387 Sentence denotes The constructed APMV-7 showed furin cleavage and increased replication and syncytium formation in cell cultures.
T49 388-452 Sentence denotes However, chicken exposed to the virus did not exhibit infection.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
165 305-310 Gene denotes furin Gene:5045
170 397-404 Species denotes chicken Tax:9031
171 442-451 Disease denotes infection MESH:D007239
166 73-79 Species denotes humans Tax:9606
167 171-197 Species denotes avian paramyxovirus type 7 Tax:622416
168 199-205 Species denotes APMV-7 Tax:622416
169 291-297 Species denotes APMV-7 Tax:622416

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T575 244-255 Protein denotes (F) protein https://www.uniprot.org/uniprot/Q91WV9|https://www.uniprot.org/uniprot/Q3UEQ0|https://www.uniprot.org/uniprot/Q38041|https://www.uniprot.org/uniprot/P97322|https://www.uniprot.org/uniprot/P49429|https://www.uniprot.org/uniprot/P32755|https://www.uniprot.org/uniprot/P0C045|https://www.uniprot.org/uniprot/P0C044|https://www.uniprot.org/uniprot/P08767|https://www.uniprot.org/uniprot/P07931|https://www.uniprot.org/uniprot/P03642|https://www.uniprot.org/uniprot/P03641|https://www.uniprot.org/uniprot/O88655
T588 305-310 Protein denotes furin https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T797 0-1 DT denotes A
T798 2-11 JJ denotes polybasic
T799 12-20 NN denotes cleavage
T800 21-25 NN denotes site
T801 26-34 VBZ denotes explains
T802 35-36 DT denotes a
T803 37-42 NN denotes virus
T804 43-47 WDT denotes that
T805 48-50 VBZ denotes is
T806 51-68 JJ denotes highly-pathogenic
T807 69-72 IN denotes for
T808 73-79 NNS denotes humans
T809 80-85 IN denotes while
T810 86-88 PRP denotes it
T811 89-91 VBZ denotes is
T812 92-106 JJ denotes low-pathogenic
T813 107-110 IN denotes for
T814 111-116 JJ denotes other
T815 117-124 NNS denotes species
T816 126-129 IN denotes For
T817 130-137 NN denotes example
T818 137-138 -COMMA- denotes ,
T819 139-144 VBG denotes using
T820 145-152 JJ denotes reverse
T821 153-160 JJ denotes genetic
T822 161-166 NNS denotes tools
T823 166-167 -COMMA- denotes ,
T824 168-170 DT denotes an
T825 171-176 JJ denotes avian
T826 177-190 NN denotes paramyxovirus
T827 191-195 NN denotes type
T828 196-197 CD denotes 7
T829 198-199 -LRB- denotes (
T830 199-205 NN denotes APMV-7
T831 205-206 -RRB- denotes )
T832 207-210 VBD denotes was
T833 211-220 VBN denotes developed
T834 221-223 IN denotes by
T835 224-232 VBG denotes mutating
T836 233-236 DT denotes the
T837 237-243 NN denotes fusion
T838 244-245 -LRB- denotes (
T839 245-246 NN denotes F
T840 246-247 -RRB- denotes )
T841 248-255 NN denotes protein
T842 256-264 NN denotes cleavage
T843 265-269 NN denotes site
T844 270-271 -LRB- denotes [
T845 271-272 CD denotes 4
T846 272-273 -RRB- denotes ]
T847 275-278 DT denotes The
T848 279-290 VBN denotes constructed
T849 291-297 NN denotes APMV-7
T850 298-304 VBD denotes showed
T851 305-310 NN denotes furin
T852 311-319 NN denotes cleavage
T853 320-323 CC denotes and
T854 324-333 VBD denotes increased
T855 334-345 NN denotes replication
T856 346-349 CC denotes and
T857 350-359 NN denotes syncytium
T858 360-369 NN denotes formation
T859 370-372 IN denotes in
T860 373-377 NN denotes cell
T861 378-386 NNS denotes cultures
T862 388-395 RB denotes However
T863 395-396 -COMMA- denotes ,
T864 397-404 NN denotes chicken
T865 405-412 VBN denotes exposed
T866 413-415 TO denotes to
T867 416-419 DT denotes the
T868 420-425 NN denotes virus
T869 426-429 VBD denotes did
T870 430-433 RB denotes not
T871 434-441 VB denotes exhibit
T872 442-451 NN denotes infection
R832 T833 T834 arg1Of developed,by
R833 T835 T834 arg2Of mutating,by
R834 T843 T835 arg2Of site,mutating
R835 T843 T836 arg1Of site,the
R836 T843 T837 arg1Of site,fusion
R837 T843 T838 arg1Of site,(
R838 T839 T838 arg2Of F,(
R839 T840 T838 arg3Of ),(
R840 T843 T841 arg1Of site,protein
R841 T843 T842 arg1Of site,cleavage
R842 T835 T844 arg1Of mutating,[
R843 T845 T844 arg2Of 4,[
R844 T846 T844 arg3Of ],[
R845 T849 T847 arg1Of APMV-7,The
R846 T849 T848 arg2Of APMV-7,constructed
R847 T849 T850 arg1Of APMV-7,showed
R848 T852 T850 arg2Of cleavage,showed
R849 T852 T851 arg1Of cleavage,furin
R850 T850 T853 arg1Of showed,and
R851 T854 T853 arg2Of increased,and
R852 T849 T854 arg1Of APMV-7,increased
R853 T856 T854 arg2Of and,increased
R854 T855 T856 arg1Of replication,and
R855 T858 T856 arg2Of formation,and
R794 T800 T797 arg1Of site,A
R795 T800 T798 arg1Of site,polybasic
R796 T800 T799 arg1Of site,cleavage
R797 T800 T801 arg1Of site,explains
R798 T803 T801 arg2Of virus,explains
R799 T803 T802 arg1Of virus,a
R800 T803 T804 arg1Of virus,that
R801 T803 T805 arg1Of virus,is
R802 T806 T805 arg2Of highly-pathogenic,is
R803 T803 T806 arg1Of virus,highly-pathogenic
R804 T806 T807 arg1Of highly-pathogenic,for
R805 T808 T807 arg2Of humans,for
R806 T801 T809 arg1Of explains,while
R807 T811 T809 arg2Of is,while
R808 T810 T811 arg1Of it,is
R809 T812 T811 arg2Of low-pathogenic,is
R810 T810 T812 arg1Of it,low-pathogenic
R811 T812 T813 arg1Of low-pathogenic,for
R812 T815 T813 arg2Of species,for
R813 T815 T814 arg1Of species,other
R814 T833 T816 arg1Of developed,For
R815 T817 T816 arg2Of example,For
R816 T833 T818 arg1Of developed,","
R817 T822 T819 arg2Of tools,using
R818 T833 T819 modOf developed,using
R819 T821 T820 arg1Of genetic,reverse
R820 T822 T821 arg1Of tools,genetic
R821 T833 T823 arg1Of developed,","
R822 T827 T824 arg1Of type,an
R823 T827 T825 arg1Of type,avian
R824 T827 T826 arg1Of type,paramyxovirus
R825 T827 T828 arg1Of type,7
R826 T827 T829 arg1Of type,(
R827 T830 T829 arg2Of APMV-7,(
R828 T831 T829 arg3Of ),(
R829 T827 T832 arg1Of type,was
R830 T833 T832 arg2Of developed,was
R831 T827 T833 arg2Of type,developed
R856 T858 T857 arg1Of formation,syncytium
R857 T854 T859 arg1Of increased,in
R858 T861 T859 arg2Of cultures,in
R859 T861 T860 arg1Of cultures,cell
R860 T871 T862 arg1Of exhibit,However
R861 T871 T863 arg1Of exhibit,","
R862 T864 T865 arg2Of chicken,exposed
R863 T865 T866 arg1Of exposed,to
R864 T868 T866 arg2Of virus,to
R865 T868 T867 arg1Of virus,the
R866 T864 T869 arg1Of chicken,did
R867 T871 T869 arg2Of exhibit,did
R868 T871 T870 arg1Of exhibit,not
R869 T864 T871 arg1Of chicken,exhibit
R870 T872 T871 arg2Of infection,exhibit

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T6 350-369 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T7 360-369 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T26 248-255 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 373-377 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 442-451 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T4 350-369 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T5 360-369 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 350-369 http://purl.obolibrary.org/obo/GO_0006949 denotes syncytium formation
T5 360-369 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-125 Sentence denotes A polybasic cleavage site explains a virus that is highly-pathogenic for humans while it is low-pathogenic for other species.
T47 126-274 Sentence denotes For example, using reverse genetic tools, an avian paramyxovirus type 7 (APMV-7) was developed by mutating the fusion (F) protein cleavage site [4].
T48 275-387 Sentence denotes The constructed APMV-7 showed furin cleavage and increased replication and syncytium formation in cell cultures.
T49 388-452 Sentence denotes However, chicken exposed to the virus did not exhibit infection.

2_test

Id Subject Object Predicate Lexical cue
32413736-22258248-48112966 271-272 22258248 denotes 4
T44212 271-272 22258248 denotes 4