PMC:7205724 / 4129-4856
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
140 | 632-635 | Gene | denotes | ACE | Gene:1636 |
141 | 439-444 | Gene | denotes | furin | Gene:5045 |
142 | 195-200 | Gene | denotes | furin | Gene:5045 |
143 | 550-551 | Gene | denotes | S | Gene:43740568 |
144 | 497-498 | Gene | denotes | S | Gene:43740568 |
145 | 169-170 | Gene | denotes | S | Gene:43740568 |
146 | 158-168 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
147 | 231-236 | Species | denotes | human | Tax:9606 |
148 | 237-247 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
149 | 267-272 | Species | denotes | human | Tax:9606 |
150 | 273-281 | Species | denotes | SARS-CoV | Tax:694009 |
151 | 297-301 | Species | denotes | CoVs | Tax:11118 |
152 | 326-329 | Species | denotes | CoV | Tax:11118 |
153 | 486-496 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
154 | 539-549 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
155 | 626-631 | Species | denotes | human | Tax:9606 |
156 | 662-671 | Species | denotes | SARS-CoV2 | Tax:2697049 |
157 | 569-575 | CellLine | denotes | VeroE6 | CVCL:0574 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T22 | 79-90 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
T23 | 95-106 | Body_part | denotes | nucleotides | http://purl.org/sig/ont/fma/fma82740 |
T24 | 576-581 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T25 | 607-612 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T33 | 158-166 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T34 | 237-245 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T35 | 273-281 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T36 | 287-291 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T37 | 316-320 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T38 | 486-494 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T39 | 539-547 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T40 | 662-666 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T39 | 44-45 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T40 | 132-134 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T41 | 139-141 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T42 | 139-141 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T43 | 183-184 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T44 | 231-236 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T45 | 267-272 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T46 | 283-286 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T47 | 464-466 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T48 | 467-469 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T49 | 467-469 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T50 | 569-581 | http://purl.obolibrary.org/obo/CLO_0051719 | denotes | VeroE6 cells |
T51 | 607-612 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T52 | 626-631 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T53 | 712-714 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T54 | 715-717 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T55 | 715-717 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T23 | 79-90 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
T24 | 79-84 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T25 | 85-90 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
T26 | 95-106 | Chemical | denotes | nucleotides | http://purl.obolibrary.org/obo/CHEBI_36976 |
T27 | 139-141 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T28 | 467-469 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T29 | 715-717 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-sample-MedDRA
Id | Subject | Object | Predicate | Lexical cue | meddra_id |
---|---|---|---|---|---|
T4 | 632-635 | http://purl.bioontology.org/ontology/MEDDRA/10022891 | denotes | ACE | http://purl.bioontology.org/ontology/MEDDRA/10050289 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13 | 210-214 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | site |
T14 | 454-458 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | site |
T15 | 576-581 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
T16 | 607-612 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cells |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T15 | 79-90 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
T16 | 95-106 | Chemical | denotes | nucleotides | http://purl.obolibrary.org/obo/CHEBI_36976 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T36 | 158-168 | Species | denotes | SARS-CoV 2 | NCBItxid:2697049 |
T37 | 231-245 | Species | denotes | human SARS-CoV | NCBItxid:694009 |
T38 | 267-281 | Species | denotes | human SARS-CoV | NCBItxid:694009 |
T39 | 283-301 | Species | denotes | bat SARS-like CoVs | NCBItxid:1508227 |
T40 | 307-315 | Species | denotes | pangolin | NCBItxid:9972|NCBItxid:9971 |
T42 | 316-329 | Species | denotes | SARS-like CoV | NCBItxid:694009 |
T43 | 486-496 | Species | denotes | SARS-CoV 2 | NCBItxid:2697049 |
T44 | 539-549 | Species | denotes | SARS-CoV 2 | NCBItxid:2697049 |
T45 | 626-631 | Species | denotes | human | NCBItxid:9606 |
T46 | 662-671 | Species | denotes | SARS-CoV2 | NCBItxid:2697049 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T41 | 0-171 | Sentence | denotes | As evidenced by sequence analysis, there is a residue insertion formed of four amino acids (12 nucleotides) at the boundary between S1 and S2 subunits of the SARS-CoV 2 S. |
T42 | 172-374 | Sentence | denotes | It defines a polybasic furin cleavage site of RRAR for the human SARS-CoV 2 that was absent in human SARS-CoV, bat SARS-like CoVs, and pangolin SARS-like CoV while might be present in other species [3]. |
T43 | 375-525 | Sentence | denotes | After the introduction of mutation to the residue insertion and furin cleavage site, the S1/S2 cleavage of the SARS-CoV 2 S did not longer take place. |
T44 | 526-636 | Sentence | denotes | However, the SARS-CoV 2 S entry raised for VeroE6 cells and remained high in BHK cells that express human ACE. |
T45 | 637-727 | Sentence | denotes | Therefore, it seems that SARS-CoV2 transmissibility does not depend on the S1/S2 cleavage. |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
146 | 158-168 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
145 | 169-170 | Gene | denotes | S | Gene:43740568 |
142 | 195-200 | Gene | denotes | furin | Gene:5045 |
147 | 231-236 | Species | denotes | human | Tax:9606 |
148 | 237-247 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
149 | 267-272 | Species | denotes | human | Tax:9606 |
150 | 273-281 | Species | denotes | SARS-CoV | Tax:694009 |
151 | 297-301 | Species | denotes | CoVs | Tax:11118 |
152 | 326-329 | Species | denotes | CoV | Tax:11118 |
141 | 439-444 | Gene | denotes | furin | Gene:5045 |
153 | 486-496 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
144 | 497-498 | Gene | denotes | S | Gene:43740568 |
154 | 539-549 | Species | denotes | SARS-CoV 2 | Tax:2697049 |
143 | 550-551 | Gene | denotes | S | Gene:43740568 |
157 | 569-575 | CellLine | denotes | VeroE6 | CVCL:0574 |
155 | 626-631 | Species | denotes | human | Tax:9606 |
140 | 632-635 | Gene | denotes | ACE | Gene:1636 |
156 | 662-671 | Species | denotes | SARS-CoV2 | Tax:2697049 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T534 | 195-200 | Protein | denotes | furin | https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958 |
T542 | 439-444 | Protein | denotes | furin | https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958 |
T550 | 632-635 | Protein | denotes | ACE | https://www.uniprot.org/uniprot/Q9GLN7|https://www.uniprot.org/uniprot/Q9GLN6|https://www.uniprot.org/uniprot/Q9EQM9|https://www.uniprot.org/uniprot/Q8CFN1|https://www.uniprot.org/uniprot/Q7TMC6|https://www.uniprot.org/uniprot/Q7M4L4|https://www.uniprot.org/uniprot/Q6GTS2|https://www.uniprot.org/uniprot/Q59GY8|https://www.uniprot.org/uniprot/Q53YX9|https://www.uniprot.org/uniprot/Q50JE5|https://www.uniprot.org/uniprot/Q10751|https://www.uniprot.org/uniprot/Q0GA41|https://www.uniprot.org/uniprot/P47820|https://www.uniprot.org/uniprot/P22968|https://www.uniprot.org/uniprot/P22967|https://www.uniprot.org/uniprot/P22966|https://www.uniprot.org/uniprot/P12822|https://www.uniprot.org/uniprot/P12821|https://www.uniprot.org/uniprot/P12820|https://www.uniprot.org/uniprot/P09470|https://www.uniprot.org/uniprot/O02852|https://www.uniprot.org/uniprot/E7EU16|https://www.uniprot.org/uniprot/B4DXI3|https://www.uniprot.org/uniprot/B0LPF0|https://www.uniprot.org/uniprot/Q9VJV3 |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T663 | 0-2 | IN | denotes | As |
T664 | 3-12 | VBN | denotes | evidenced |
T665 | 13-15 | IN | denotes | by |
T666 | 16-24 | NN | denotes | sequence |
T667 | 25-33 | NN | denotes | analysis |
T668 | 33-34 | -COMMA- | denotes | , |
T669 | 35-40 | EX | denotes | there |
T670 | 41-43 | VBZ | denotes | is |
T671 | 44-45 | DT | denotes | a |
T672 | 46-53 | NN | denotes | residue |
T673 | 54-63 | NN | denotes | insertion |
T674 | 64-70 | VBN | denotes | formed |
T675 | 71-73 | IN | denotes | of |
T676 | 74-78 | CD | denotes | four |
T677 | 79-84 | NN | denotes | amino |
T678 | 85-90 | NNS | denotes | acids |
T679 | 91-92 | -LRB- | denotes | ( |
T680 | 92-94 | CD | denotes | 12 |
T681 | 95-106 | NNS | denotes | nucleotides |
T682 | 106-107 | -RRB- | denotes | ) |
T683 | 108-110 | IN | denotes | at |
T684 | 111-114 | DT | denotes | the |
T685 | 115-123 | NN | denotes | boundary |
T686 | 124-131 | IN | denotes | between |
T687 | 132-134 | NN | denotes | S1 |
T688 | 135-138 | CC | denotes | and |
T689 | 139-141 | NN | denotes | S2 |
T690 | 142-150 | NNS | denotes | subunits |
T691 | 151-153 | IN | denotes | of |
T692 | 154-157 | DT | denotes | the |
T693 | 158-166 | NN | denotes | SARS-CoV |
T694 | 167-168 | CD | denotes | 2 |
T695 | 169-171 | NNP | denotes | S. |
T696 | 172-174 | PRP | denotes | It |
T697 | 175-182 | VBZ | denotes | defines |
T698 | 183-184 | DT | denotes | a |
T699 | 185-194 | JJ | denotes | polybasic |
T700 | 195-200 | NN | denotes | furin |
T701 | 201-209 | NN | denotes | cleavage |
T702 | 210-214 | NN | denotes | site |
T703 | 215-217 | IN | denotes | of |
T704 | 218-222 | NN | denotes | RRAR |
T705 | 223-226 | IN | denotes | for |
T706 | 227-230 | DT | denotes | the |
T707 | 231-236 | JJ | denotes | human |
T708 | 237-245 | NN | denotes | SARS-CoV |
T709 | 246-247 | CD | denotes | 2 |
T710 | 248-252 | WDT | denotes | that |
T711 | 253-256 | VBD | denotes | was |
T712 | 257-263 | JJ | denotes | absent |
T713 | 264-266 | IN | denotes | in |
T714 | 267-272 | JJ | denotes | human |
T715 | 273-281 | NN | denotes | SARS-CoV |
T716 | 281-282 | -COMMA- | denotes | , |
T717 | 283-286 | NN | denotes | bat |
T718 | 287-296 | JJ | denotes | SARS-like |
T719 | 297-301 | NNS | denotes | CoVs |
T720 | 301-302 | -COMMA- | denotes | , |
T721 | 303-306 | CC | denotes | and |
T722 | 307-315 | NN | denotes | pangolin |
T723 | 316-325 | JJ | denotes | SARS-like |
T724 | 326-329 | NN | denotes | CoV |
T725 | 330-335 | NN | denotes | while |
T726 | 336-341 | MD | denotes | might |
T727 | 342-344 | VB | denotes | be |
T728 | 345-352 | JJ | denotes | present |
T729 | 353-355 | IN | denotes | in |
T730 | 356-361 | JJ | denotes | other |
T731 | 362-369 | NNS | denotes | species |
T732 | 370-371 | -LRB- | denotes | [ |
T733 | 371-372 | CD | denotes | 3 |
T734 | 372-373 | -RRB- | denotes | ] |
T735 | 375-380 | IN | denotes | After |
T736 | 381-384 | DT | denotes | the |
T737 | 385-397 | NN | denotes | introduction |
T738 | 398-400 | IN | denotes | of |
T739 | 401-409 | NN | denotes | mutation |
T740 | 410-412 | TO | denotes | to |
T741 | 413-416 | DT | denotes | the |
T742 | 417-424 | NN | denotes | residue |
T743 | 425-434 | NN | denotes | insertion |
T744 | 435-438 | CC | denotes | and |
T745 | 439-444 | NN | denotes | furin |
T746 | 445-453 | NN | denotes | cleavage |
T747 | 454-458 | NN | denotes | site |
T748 | 458-459 | -COMMA- | denotes | , |
T749 | 460-463 | DT | denotes | the |
T750 | 464-469 | NN | denotes | S1/S2 |
T751 | 470-478 | NN | denotes | cleavage |
T752 | 479-481 | IN | denotes | of |
T753 | 482-485 | DT | denotes | the |
T754 | 486-494 | JJ | denotes | SARS-CoV |
T755 | 495-496 | CD | denotes | 2 |
T756 | 497-498 | NN | denotes | S |
T757 | 499-502 | VBD | denotes | did |
T758 | 503-506 | RB | denotes | not |
T759 | 507-513 | RBR | denotes | longer |
T760 | 514-518 | VB | denotes | take |
T761 | 519-524 | NN | denotes | place |
T762 | 526-533 | RB | denotes | However |
T763 | 533-534 | -COMMA- | denotes | , |
T764 | 535-538 | DT | denotes | the |
T765 | 539-547 | JJ | denotes | SARS-CoV |
T766 | 548-549 | CD | denotes | 2 |
T767 | 550-551 | NN | denotes | S |
T768 | 552-557 | NN | denotes | entry |
T769 | 558-564 | VBN | denotes | raised |
T770 | 565-568 | IN | denotes | for |
T771 | 569-575 | NN | denotes | VeroE6 |
T772 | 576-581 | NNS | denotes | cells |
T773 | 582-585 | CC | denotes | and |
T774 | 586-594 | VBD | denotes | remained |
T775 | 595-599 | JJ | denotes | high |
T776 | 600-602 | IN | denotes | in |
T777 | 603-606 | NN | denotes | BHK |
T778 | 607-612 | NNS | denotes | cells |
T779 | 613-617 | WDT | denotes | that |
T780 | 618-625 | VBP | denotes | express |
T781 | 626-631 | JJ | denotes | human |
T782 | 632-635 | NN | denotes | ACE |
T783 | 637-646 | RB | denotes | Therefore |
T784 | 646-647 | -COMMA- | denotes | , |
T785 | 648-650 | PRP | denotes | it |
T786 | 651-656 | VBZ | denotes | seems |
T787 | 657-661 | IN | denotes | that |
T788 | 662-671 | NN | denotes | SARS-CoV2 |
T789 | 672-688 | NN | denotes | transmissibility |
T790 | 689-693 | VBZ | denotes | does |
T791 | 694-697 | RB | denotes | not |
T792 | 698-704 | VB | denotes | depend |
T793 | 705-707 | IN | denotes | on |
T794 | 708-711 | DT | denotes | the |
T795 | 712-717 | NN | denotes | S1/S2 |
T796 | 718-726 | NN | denotes | cleavage |
R770 | T768 | T774 | arg1Of | entry,remained |
R771 | T775 | T774 | arg2Of | high,remained |
R772 | T768 | T775 | arg1Of | entry,high |
R773 | T775 | T776 | arg1Of | high,in |
R774 | T778 | T776 | arg2Of | cells,in |
R775 | T778 | T777 | arg1Of | cells,BHK |
R776 | T778 | T779 | arg1Of | cells,that |
R777 | T778 | T780 | arg1Of | cells,express |
R778 | T782 | T780 | arg2Of | ACE,express |
R779 | T782 | T781 | arg1Of | ACE,human |
R780 | T786 | T783 | arg1Of | seems,Therefore |
R781 | T786 | T784 | arg1Of | seems,"," |
R782 | T785 | T786 | arg1Of | it,seems |
R783 | T792 | T786 | arg2Of | depend,seems |
R784 | T792 | T787 | arg1Of | depend,that |
R656 | T670 | T663 | arg1Of | is,As |
R657 | T664 | T663 | arg2Of | evidenced,As |
R658 | T664 | T665 | arg1Of | evidenced,by |
R659 | T667 | T665 | arg2Of | analysis,by |
R660 | T667 | T666 | arg1Of | analysis,sequence |
R661 | T670 | T668 | arg1Of | is,"," |
R662 | T669 | T670 | arg1Of | there,is |
R663 | T673 | T670 | arg2Of | insertion,is |
R664 | T673 | T671 | arg1Of | insertion,a |
R665 | T673 | T672 | arg1Of | insertion,residue |
R666 | T673 | T674 | arg2Of | insertion,formed |
R667 | T674 | T675 | arg1Of | formed,of |
R668 | T678 | T675 | arg2Of | acids,of |
R669 | T678 | T676 | arg1Of | acids,four |
R670 | T678 | T677 | arg1Of | acids,amino |
R671 | T678 | T679 | arg1Of | acids,( |
R672 | T681 | T679 | arg2Of | nucleotides,( |
R673 | T682 | T679 | arg3Of | ),( |
R674 | T681 | T680 | arg1Of | nucleotides,12 |
R675 | T674 | T683 | arg1Of | formed,at |
R676 | T685 | T683 | arg2Of | boundary,at |
R677 | T685 | T684 | arg1Of | boundary,the |
R678 | T670 | T686 | arg1Of | is,between |
R679 | T690 | T686 | arg2Of | subunits,between |
R680 | T690 | T687 | arg1Of | subunits,S1 |
R681 | T687 | T688 | arg1Of | S1,and |
R682 | T689 | T688 | arg2Of | S2,and |
R683 | T690 | T689 | arg1Of | subunits,S2 |
R684 | T690 | T691 | arg1Of | subunits,of |
R685 | T695 | T691 | arg2Of | S.,of |
R686 | T695 | T692 | arg1Of | S.,the |
R687 | T695 | T693 | arg1Of | S.,SARS-CoV |
R688 | T695 | T694 | arg1Of | S.,2 |
R689 | T696 | T697 | arg1Of | It,defines |
R690 | T695 | T697 | arg2Of | S.,defines |
R691 | T702 | T698 | arg1Of | site,a |
R692 | T702 | T699 | arg1Of | site,polybasic |
R693 | T702 | T700 | arg1Of | site,furin |
R694 | T702 | T701 | arg1Of | site,cleavage |
R695 | T702 | T703 | arg1Of | site,of |
R696 | T704 | T703 | arg2Of | RRAR,of |
R697 | T702 | T705 | arg1Of | site,for |
R698 | T708 | T705 | arg2Of | SARS-CoV,for |
R699 | T708 | T706 | arg1Of | SARS-CoV,the |
R700 | T708 | T707 | arg1Of | SARS-CoV,human |
R701 | T708 | T709 | arg1Of | SARS-CoV,2 |
R702 | T702 | T710 | arg1Of | site,that |
R703 | T702 | T711 | arg1Of | site,was |
R704 | T712 | T711 | arg2Of | absent,was |
R705 | T702 | T712 | arg1Of | site,absent |
R706 | T712 | T713 | arg1Of | absent,in |
R707 | T721 | T713 | arg2Of | and,in |
R708 | T715 | T714 | arg1Of | SARS-CoV,human |
R709 | T715 | T716 | arg1Of | SARS-CoV,"," |
R710 | T719 | T716 | arg2Of | CoVs,"," |
R711 | T719 | T717 | arg1Of | CoVs,bat |
R712 | T719 | T718 | arg1Of | CoVs,SARS-like |
R713 | T721 | T720 | arg1Of | and,"," |
R714 | T716 | T721 | arg1Of | ",",and |
R715 | T725 | T721 | arg2Of | while,and |
R716 | T725 | T722 | arg1Of | while,pangolin |
R717 | T725 | T723 | arg1Of | while,SARS-like |
R718 | T725 | T724 | arg1Of | while,CoV |
R719 | T702 | T726 | arg1Of | site,might |
R720 | T727 | T726 | arg2Of | be,might |
R721 | T690 | T726 | modOf | subunits,might |
R722 | T702 | T727 | arg1Of | site,be |
R723 | T728 | T727 | arg2Of | present,be |
R724 | T702 | T728 | arg1Of | site,present |
R725 | T728 | T729 | arg1Of | present,in |
R726 | T731 | T729 | arg2Of | species,in |
R727 | T731 | T730 | arg1Of | species,other |
R728 | T727 | T732 | arg1Of | be,[ |
R729 | T733 | T732 | arg2Of | 3,[ |
R730 | T734 | T732 | arg3Of | ],[ |
R731 | T760 | T735 | arg1Of | take,After |
R732 | T737 | T735 | arg2Of | introduction,After |
R733 | T737 | T736 | arg1Of | introduction,the |
R734 | T737 | T738 | arg1Of | introduction,of |
R735 | T739 | T738 | arg2Of | mutation,of |
R736 | T737 | T740 | arg1Of | introduction,to |
R737 | T747 | T740 | arg2Of | site,to |
R738 | T747 | T741 | arg1Of | site,the |
R739 | T747 | T742 | arg1Of | site,residue |
R740 | T747 | T743 | arg1Of | site,insertion |
R741 | T743 | T744 | arg1Of | insertion,and |
R742 | T745 | T744 | arg2Of | furin,and |
R743 | T747 | T745 | arg1Of | site,furin |
R744 | T747 | T746 | arg1Of | site,cleavage |
R745 | T760 | T748 | arg1Of | take,"," |
R746 | T751 | T749 | arg1Of | cleavage,the |
R747 | T751 | T750 | arg1Of | cleavage,S1/S2 |
R748 | T751 | T752 | arg1Of | cleavage,of |
R749 | T756 | T752 | arg2Of | S,of |
R750 | T756 | T753 | arg1Of | S,the |
R751 | T756 | T754 | arg1Of | S,SARS-CoV |
R752 | T756 | T755 | arg1Of | S,2 |
R753 | T751 | T757 | arg1Of | cleavage,did |
R754 | T760 | T757 | arg2Of | take,did |
R755 | T760 | T758 | arg1Of | take,not |
R756 | T760 | T759 | arg1Of | take,longer |
R757 | T751 | T760 | arg1Of | cleavage,take |
R758 | T761 | T760 | arg2Of | place,take |
R759 | T774 | T762 | arg1Of | remained,However |
R760 | T774 | T763 | arg1Of | remained,"," |
R761 | T768 | T764 | arg1Of | entry,the |
R762 | T768 | T765 | arg1Of | entry,SARS-CoV |
R763 | T768 | T766 | arg1Of | entry,2 |
R764 | T768 | T767 | arg1Of | entry,S |
R765 | T768 | T769 | arg2Of | entry,raised |
R766 | T769 | T770 | arg1Of | raised,for |
R767 | T772 | T770 | arg2Of | cells,for |
R768 | T772 | T771 | arg1Of | cells,VeroE6 |
R769 | T768 | T773 | arg1Of | entry,and |
R785 | T789 | T788 | arg1Of | transmissibility,SARS-CoV2 |
R786 | T789 | T790 | arg1Of | transmissibility,does |
R787 | T792 | T790 | arg2Of | depend,does |
R788 | T792 | T791 | arg1Of | depend,not |
R789 | T789 | T792 | arg1Of | transmissibility,depend |
R790 | T792 | T793 | arg1Of | depend,on |
R791 | T796 | T793 | arg2Of | cleavage,on |
R792 | T796 | T794 | arg1Of | cleavage,the |
R793 | T796 | T795 | arg1Of | cleavage,S1/S2 |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T22 | 79-90 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
T23 | 95-106 | Body_part | denotes | nucleotides | http://purl.org/sig/ont/fma/fma82740 |
T24 | 576-581 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T25 | 607-612 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T33 | 158-168 | Disease | denotes | SARS-CoV 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T34 | 237-247 | Disease | denotes | SARS-CoV 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T35 | 273-281 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T36 | 287-291 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T37 | 316-320 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T38 | 486-496 | Disease | denotes | SARS-CoV 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T39 | 539-549 | Disease | denotes | SARS-CoV 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T40 | 662-671 | Disease | denotes | SARS-CoV2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T41 | 0-171 | Sentence | denotes | As evidenced by sequence analysis, there is a residue insertion formed of four amino acids (12 nucleotides) at the boundary between S1 and S2 subunits of the SARS-CoV 2 S. |
T42 | 172-374 | Sentence | denotes | It defines a polybasic furin cleavage site of RRAR for the human SARS-CoV 2 that was absent in human SARS-CoV, bat SARS-like CoVs, and pangolin SARS-like CoV while might be present in other species [3]. |
T43 | 375-525 | Sentence | denotes | After the introduction of mutation to the residue insertion and furin cleavage site, the S1/S2 cleavage of the SARS-CoV 2 S did not longer take place. |
T44 | 526-636 | Sentence | denotes | However, the SARS-CoV 2 S entry raised for VeroE6 cells and remained high in BHK cells that express human ACE. |
T45 | 637-727 | Sentence | denotes | Therefore, it seems that SARS-CoV2 transmissibility does not depend on the S1/S2 cleavage. |