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PMC:7205724 / 2999-3950 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
109 930-939 Species denotes SARS-CoV2 Tax:2697049
115 177-178 Gene denotes S Gene:43740568
116 83-92 Species denotes SARS-CoV2 Tax:2697049
117 170-176 Species denotes SARS-2 Tax:2697049
118 556-569 Species denotes coronaviruses Tax:11118
119 133-138 Gene denotes spike Gene:43740568

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 50-58 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 93-97 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 143-155 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T14 378-383 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 438-456 Body_part denotes cellular membranes http://purl.org/sig/ont/fma/fma63841
T16 544-551 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 714-721 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 877-895 Body_part denotes cellular membranes http://purl.org/sig/ont/fma/fma63841
T19 904-912 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T20 940-944 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 83-87 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 170-174 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 930-934 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 10-11 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 93-97 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T19 163-168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T20 219-221 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T21 226-228 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T22 226-228 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T23 378-383 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T24 447-456 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T25 475-484 http://purl.obolibrary.org/obo/CLO_0001658 denotes activates
T26 605-607 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T27 608-610 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T28 608-610 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T29 611-619 http://purl.obolibrary.org/obo/UBERON_0007651 denotes junction
T30 631-633 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T31 631-633 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T32 636-637 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 671-678 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T34 838-840 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T35 838-840 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T36 886-895 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T37 940-944 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T13 50-58 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T14 143-155 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T15 226-228 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T16 544-551 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T17 608-610 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T18 631-633 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T19 671-678 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T20 714-721 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T21 838-840 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T6 93-97 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T7 163-168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 198-208 http://purl.obolibrary.org/obo/BFO_0000034 denotes functional
T9 378-383 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T10 594-599 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T11 940-944 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 50-58 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T10 143-155 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T11 544-551 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T12 671-678 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T13 714-721 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T31 83-92 Species denotes SARS-CoV2 NCBItxid:2697049
T32 170-176 Species denotes SARS-2 NCBItxid:2697049
T33 930-939 Species denotes SARS-CoV2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T30 0-104 Sentence denotes Fig. 1 is a schematic illustration of the minimum proteins required to mediate the SARS-CoV2 cell entry.
T31 105-229 Sentence denotes The trimeric, transmembrane spike (S) glycoprotein of the virus, SARS-2-S, includes two main functional subunits: S1 and S2.
T32 230-384 Sentence denotes The former, in turn, consists of the four core domains, S1A, S1B, S1C, and S1D, that contribute to the attachment to the surface receptor of target cells.
T33 385-457 Sentence denotes Then, the latter coordinates the fusion of viral and cellular membranes.
T34 458-552 Sentence denotes Receptor binding activates proteases that can carry out proteolytic cleavage of the S protein.
T35 553-683 Sentence denotes In coronaviruses, cleavage occurs at two sites: the S1/S2 junction and at the S2′, a region close to the viral fusion peptide [2].
T36 684-896 Sentence denotes Proteolytic cleavage of the S protein causes conformational changes so that they cannot revert to the original structure and profound enough to prime the S2 subunit for the fusion of viral and cellular membranes.
T37 897-951 Sentence denotes Fig. 1 Proteins required for the SARS-CoV2-cell entry.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
116 83-92 Species denotes SARS-CoV2 Tax:2697049
119 133-138 Gene denotes spike Gene:43740568
117 170-176 Species denotes SARS-2 Tax:2697049
115 177-178 Gene denotes S Gene:43740568
118 556-569 Species denotes coronaviruses Tax:11118
109 930-939 Species denotes SARS-CoV2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T265 139-155 Protein denotes (S) glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T364 286-289 Protein denotes S1A https://www.uniprot.org/uniprot/Q642U2|https://www.uniprot.org/uniprot/P28878|https://www.uniprot.org/uniprot/P02350
T367 291-294 Protein denotes S1B https://www.uniprot.org/uniprot/P47835
T368 542-551 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T401 671-681 Protein denotes peptide [2 https://www.uniprot.org/uniprot/P15230
T402 712-721 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T468 0-4 NNP denotes Fig.
T469 5-6 CD denotes 1
T470 7-9 VBZ denotes is
T471 10-11 DT denotes a
T472 12-21 JJ denotes schematic
T473 22-34 NN denotes illustration
T474 35-37 IN denotes of
T475 38-41 DT denotes the
T476 42-49 JJ denotes minimum
T477 50-58 NNS denotes proteins
T478 59-67 VBN denotes required
T479 68-70 TO denotes to
T480 71-78 VB denotes mediate
T481 79-82 DT denotes the
T482 83-92 NN denotes SARS-CoV2
T483 93-97 NN denotes cell
T484 98-103 NN denotes entry
T485 105-108 DT denotes The
T486 109-117 JJ denotes trimeric
T487 117-118 -COMMA- denotes ,
T488 119-132 JJ denotes transmembrane
T489 133-138 NN denotes spike
T490 139-140 -LRB- denotes (
T491 140-141 NN denotes S
T492 141-142 -RRB- denotes )
T493 143-155 NN denotes glycoprotein
T494 156-158 IN denotes of
T495 159-162 DT denotes the
T496 163-168 NN denotes virus
T497 168-169 -COMMA- denotes ,
T498 170-178 NN denotes SARS-2-S
T499 178-179 -COMMA- denotes ,
T500 180-188 VBZ denotes includes
T501 189-192 CD denotes two
T502 193-197 JJ denotes main
T503 198-208 JJ denotes functional
T504 209-217 NNS denotes subunits
T505 217-218 -COLON- denotes :
T506 219-221 NN denotes S1
T507 222-225 CC denotes and
T508 226-228 NN denotes S2
T509 230-233 DT denotes The
T510 234-240 JJ denotes former
T511 240-241 -COMMA- denotes ,
T512 242-244 IN denotes in
T513 245-249 NN denotes turn
T514 249-250 -COMMA- denotes ,
T515 251-259 VBZ denotes consists
T516 260-262 IN denotes of
T517 263-266 DT denotes the
T518 267-271 CD denotes four
T519 272-276 NN denotes core
T520 277-284 NNS denotes domains
T521 284-285 -COMMA- denotes ,
T522 286-289 NN denotes S1A
T523 289-290 -COMMA- denotes ,
T524 291-294 NN denotes S1B
T525 294-295 -COMMA- denotes ,
T526 296-299 NN denotes S1C
T527 299-300 -COMMA- denotes ,
T528 301-304 CC denotes and
T529 305-308 NN denotes S1D
T530 308-309 -COMMA- denotes ,
T531 310-314 WDT denotes that
T532 315-325 VBP denotes contribute
T533 326-328 TO denotes to
T534 329-332 DT denotes the
T535 333-343 NN denotes attachment
T536 344-346 TO denotes to
T537 347-350 DT denotes the
T538 351-358 NN denotes surface
T539 359-367 NN denotes receptor
T540 368-370 IN denotes of
T541 371-377 NN denotes target
T542 378-383 NNS denotes cells
T543 385-389 RB denotes Then
T544 389-390 -COMMA- denotes ,
T545 391-394 DT denotes the
T546 395-401 JJ denotes latter
T547 402-413 VBZ denotes coordinates
T548 414-417 DT denotes the
T549 418-424 NN denotes fusion
T550 425-427 IN denotes of
T551 428-433 JJ denotes viral
T552 434-437 CC denotes and
T553 438-446 JJ denotes cellular
T554 447-456 NNS denotes membranes
T555 458-466 NN denotes Receptor
T556 467-474 NN denotes binding
T557 475-484 VBZ denotes activates
T558 485-494 NNS denotes proteases
T559 495-499 WDT denotes that
T560 500-503 MD denotes can
T561 504-509 VB denotes carry
T562 510-513 RP denotes out
T563 514-525 JJ denotes proteolytic
T564 526-534 NN denotes cleavage
T565 535-537 IN denotes of
T566 538-541 DT denotes the
T567 542-543 NN denotes S
T568 544-551 NN denotes protein
T569 553-555 IN denotes In
T570 556-569 NNS denotes coronaviruses
T571 569-570 -COMMA- denotes ,
T572 571-579 NN denotes cleavage
T573 580-586 VBZ denotes occurs
T574 587-589 IN denotes at
T575 590-593 CD denotes two
T576 594-599 NNS denotes sites
T577 599-600 -COLON- denotes :
T578 601-604 DT denotes the
T579 605-610 NN denotes S1/S2
T580 611-619 NN denotes junction
T581 620-623 CC denotes and
T582 624-626 IN denotes at
T583 627-630 DT denotes the
T584 631-634 NN denotes S2′
T585 634-635 -COMMA- denotes ,
T586 636-637 DT denotes a
T587 638-644 NN denotes region
T588 645-650 JJ denotes close
T589 651-653 TO denotes to
T590 654-657 DT denotes the
T591 658-663 JJ denotes viral
T592 664-670 NN denotes fusion
T593 671-678 NN denotes peptide
T594 679-680 -LRB- denotes [
T595 680-681 CD denotes 2
T596 681-682 -RRB- denotes ]
T597 684-695 JJ denotes Proteolytic
T598 696-704 NN denotes cleavage
T599 705-707 IN denotes of
T600 708-711 DT denotes the
T601 712-713 NN denotes S
T602 714-721 NN denotes protein
T603 722-728 VBZ denotes causes
T604 729-743 JJ denotes conformational
T605 744-751 NNS denotes changes
T606 752-754 IN denotes so
T607 755-759 IN denotes that
T608 760-764 PRP denotes they
T609 765-768 MD denotes can
T610 768-771 RB denotes not
T611 772-778 VB denotes revert
T612 779-781 TO denotes to
T613 782-785 DT denotes the
T614 786-794 JJ denotes original
T615 795-804 NN denotes structure
T616 805-808 CC denotes and
T617 809-817 JJ denotes profound
T618 818-824 RB denotes enough
T619 825-827 TO denotes to
T620 828-833 VB denotes prime
T621 834-837 DT denotes the
T622 838-840 NN denotes S2
T623 841-848 NN denotes subunit
T624 849-852 IN denotes for
T625 853-856 DT denotes the
T626 857-863 NN denotes fusion
T627 864-866 IN denotes of
T628 867-872 JJ denotes viral
T629 873-876 CC denotes and
T630 877-885 JJ denotes cellular
T631 886-895 NNS denotes membranes
T632 897-901 NNP denotes Fig.
T633 902-903 CD denotes 1
T634 904-912 NNS denotes Proteins
T635 913-921 VBN denotes required
T636 922-925 IN denotes for
T637 926-929 DT denotes the
T638 930-944 NN denotes SARS-CoV2-cell
T639 945-950 NN denotes entry
R522 T528 T527 arg1Of and,","
R523 T525 T528 arg1Of ",",and
R524 T529 T528 arg2Of S1D,and
R525 T520 T530 arg1Of domains,","
R526 T520 T531 arg1Of domains,that
R527 T520 T532 arg1Of domains,contribute
R528 T532 T533 arg1Of contribute,to
R529 T535 T533 arg2Of attachment,to
R530 T535 T534 arg1Of attachment,the
R531 T535 T536 arg1Of attachment,to
R532 T539 T536 arg2Of receptor,to
R533 T539 T537 arg1Of receptor,the
R534 T539 T538 arg1Of receptor,surface
R535 T539 T540 arg1Of receptor,of
R536 T542 T540 arg2Of cells,of
R537 T542 T541 arg1Of cells,target
R538 T547 T543 arg1Of coordinates,Then
R539 T547 T544 arg1Of coordinates,","
R540 T546 T545 arg1Of latter,the
R465 T468 T469 arg1Of Fig.,1
R466 T468 T470 arg1Of Fig.,is
R467 T473 T470 arg2Of illustration,is
R468 T473 T471 arg1Of illustration,a
R469 T473 T472 arg1Of illustration,schematic
R470 T473 T474 arg1Of illustration,of
R471 T477 T474 arg2Of proteins,of
R472 T477 T475 arg1Of proteins,the
R473 T477 T476 arg1Of proteins,minimum
R474 T477 T478 arg2Of proteins,required
R475 T480 T479 arg1Of mediate,to
R476 T478 T479 modOf required,to
R477 T484 T480 arg2Of entry,mediate
R478 T484 T481 arg1Of entry,the
R479 T484 T482 arg1Of entry,SARS-CoV2
R480 T484 T483 arg1Of entry,cell
R481 T493 T485 arg1Of glycoprotein,The
R482 T493 T486 arg1Of glycoprotein,trimeric
R483 T486 T487 arg1Of trimeric,","
R484 T488 T487 arg2Of transmembrane,","
R485 T493 T488 arg1Of glycoprotein,transmembrane
R486 T493 T489 arg1Of glycoprotein,spike
R487 T493 T490 arg1Of glycoprotein,(
R488 T491 T490 arg2Of S,(
R489 T492 T490 arg3Of ),(
R490 T493 T494 arg1Of glycoprotein,of
R491 T496 T494 arg2Of virus,of
R492 T496 T495 arg1Of virus,the
R493 T493 T497 arg1Of glycoprotein,","
R494 T498 T497 arg2Of SARS-2-S,","
R495 T500 T499 arg1Of includes,","
R496 T493 T500 arg1Of glycoprotein,includes
R497 T504 T500 arg2Of subunits,includes
R498 T504 T501 arg1Of subunits,two
R499 T504 T502 arg1Of subunits,main
R500 T504 T503 arg1Of subunits,functional
R501 T504 T505 arg1Of subunits,:
R502 T507 T505 arg2Of and,:
R503 T506 T507 arg1Of S1,and
R504 T508 T507 arg2Of S2,and
R505 T510 T509 arg1Of former,The
R506 T515 T511 arg1Of consists,","
R507 T515 T512 arg1Of consists,in
R508 T513 T512 arg2Of turn,in
R509 T515 T514 arg1Of consists,","
R510 T510 T515 arg1Of former,consists
R511 T515 T516 arg1Of consists,of
R512 T520 T516 arg2Of domains,of
R513 T520 T517 arg1Of domains,the
R514 T520 T518 arg1Of domains,four
R515 T520 T519 arg1Of domains,core
R516 T520 T521 arg1Of domains,","
R517 T528 T521 arg2Of and,","
R518 T522 T523 arg1Of S1A,","
R519 T524 T523 arg2Of S1B,","
R520 T523 T525 arg1Of ",",","
R521 T526 T525 arg2Of S1C,","
R541 T546 T547 arg1Of latter,coordinates
R542 T549 T547 arg2Of fusion,coordinates
R543 T549 T548 arg1Of fusion,the
R544 T549 T550 arg1Of fusion,of
R545 T554 T550 arg2Of membranes,of
R546 T554 T551 arg1Of membranes,viral
R547 T551 T552 arg1Of viral,and
R548 T553 T552 arg2Of cellular,and
R549 T554 T553 arg1Of membranes,cellular
R550 T556 T555 arg1Of binding,Receptor
R551 T556 T557 arg1Of binding,activates
R552 T558 T557 arg2Of proteases,activates
R553 T558 T559 arg1Of proteases,that
R554 T558 T560 arg1Of proteases,can
R555 T561 T560 arg2Of carry,can
R556 T558 T561 arg1Of proteases,carry
R557 T564 T561 arg2Of cleavage,carry
R558 T561 T562 arg1Of carry,out
R559 T564 T563 arg1Of cleavage,proteolytic
R560 T564 T565 arg1Of cleavage,of
R561 T568 T565 arg2Of protein,of
R562 T568 T566 arg1Of protein,the
R563 T568 T567 arg1Of protein,S
R564 T573 T569 arg1Of occurs,In
R565 T570 T569 arg2Of coronaviruses,In
R566 T573 T571 arg1Of occurs,","
R567 T572 T573 arg1Of cleavage,occurs
R568 T573 T574 arg1Of occurs,at
R569 T576 T574 arg2Of sites,at
R570 T576 T575 arg1Of sites,two
R571 T576 T577 arg1Of sites,:
R572 T580 T577 arg2Of junction,:
R573 T580 T578 arg1Of junction,the
R574 T580 T579 arg1Of junction,S1/S2
R575 T574 T581 arg1Of at,and
R576 T582 T581 arg2Of at,and
R577 T573 T582 arg1Of occurs,at
R578 T584 T582 arg2Of S2′,at
R579 T584 T583 arg1Of S2′,the
R580 T584 T585 arg1Of S2′,","
R581 T587 T585 arg2Of region,","
R582 T587 T586 arg1Of region,a
R583 T587 T588 arg1Of region,close
R584 T588 T589 arg1Of close,to
R585 T593 T589 arg2Of peptide,to
R586 T593 T590 arg1Of peptide,the
R587 T593 T591 arg1Of peptide,viral
R588 T593 T592 arg1Of peptide,fusion
R589 T593 T594 arg1Of peptide,[
R590 T595 T594 arg2Of 2,[
R591 T596 T594 arg3Of ],[
R592 T598 T597 arg1Of cleavage,Proteolytic
R593 T598 T599 arg1Of cleavage,of
R594 T602 T599 arg2Of protein,of
R595 T602 T600 arg1Of protein,the
R596 T602 T601 arg1Of protein,S
R597 T598 T603 arg1Of cleavage,causes
R598 T605 T603 arg2Of changes,causes
R599 T605 T604 arg1Of changes,conformational
R600 T603 T606 arg1Of causes,so
R601 T611 T606 arg2Of revert,so
R602 T606 T607 arg1Of so,that
R603 T608 T609 arg1Of they,can
R604 T611 T609 arg2Of revert,can
R605 T611 T610 arg1Of revert,not
R606 T608 T611 arg1Of they,revert
R607 T611 T612 arg1Of revert,to
R608 T615 T612 arg2Of structure,to
R609 T615 T613 arg1Of structure,the
R610 T615 T614 arg1Of structure,original
R611 T615 T616 arg1Of structure,and
R612 T615 T617 arg1Of structure,profound
R613 T620 T617 arg2Of prime,profound
R614 T617 T618 arg1Of profound,enough
R615 T620 T619 arg1Of prime,to
R616 T623 T620 arg2Of subunit,prime
R617 T623 T621 arg1Of subunit,the
R618 T623 T622 arg1Of subunit,S2
R619 T623 T624 arg1Of subunit,for
R620 T626 T624 arg2Of fusion,for
R621 T626 T625 arg1Of fusion,the
R622 T626 T627 arg1Of fusion,of
R623 T631 T627 arg2Of membranes,of
R624 T631 T628 arg1Of membranes,viral
R625 T628 T629 arg1Of viral,and
R626 T630 T629 arg2Of cellular,and
R627 T631 T630 arg1Of membranes,cellular
R628 T634 T632 arg1Of Proteins,Fig.
R629 T632 T633 arg1Of Fig.,1
R630 T634 T635 arg2Of Proteins,required
R631 T635 T636 arg1Of required,for
R632 T639 T636 arg2Of entry,for
R633 T639 T637 arg1Of entry,the
R634 T639 T638 arg1Of entry,SARS-CoV2-cell

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T11 50-58 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 93-97 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 143-155 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T14 378-383 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 438-456 Body_part denotes cellular membranes http://purl.org/sig/ont/fma/fma63841
T16 544-551 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T17 714-721 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 877-895 Body_part denotes cellular membranes http://purl.org/sig/ont/fma/fma63841
T19 904-912 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T20 940-944 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 83-92 Disease denotes SARS-CoV2 http://purl.obolibrary.org/obo/MONDO_0100096
T29 170-174 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 930-939 Disease denotes SARS-CoV2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T30 0-104 Sentence denotes Fig. 1 is a schematic illustration of the minimum proteins required to mediate the SARS-CoV2 cell entry.
T31 105-229 Sentence denotes The trimeric, transmembrane spike (S) glycoprotein of the virus, SARS-2-S, includes two main functional subunits: S1 and S2.
T32 230-384 Sentence denotes The former, in turn, consists of the four core domains, S1A, S1B, S1C, and S1D, that contribute to the attachment to the surface receptor of target cells.
T33 385-457 Sentence denotes Then, the latter coordinates the fusion of viral and cellular membranes.
T34 458-552 Sentence denotes Receptor binding activates proteases that can carry out proteolytic cleavage of the S protein.
T35 553-683 Sentence denotes In coronaviruses, cleavage occurs at two sites: the S1/S2 junction and at the S2′, a region close to the viral fusion peptide [2].
T36 684-896 Sentence denotes Proteolytic cleavage of the S protein causes conformational changes so that they cannot revert to the original structure and profound enough to prime the S2 subunit for the fusion of viral and cellular membranes.
T37 897-951 Sentence denotes Fig. 1 Proteins required for the SARS-CoV2-cell entry.

2_test

Id Subject Object Predicate Lexical cue
32413736-26935699-48112965 680-681 26935699 denotes 2
T3678 680-681 26935699 denotes 2