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PMC:7205724 / 17512-18008 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
613 72-77 Species denotes human Tax:9606
614 262-276 Species denotes Parvovirus B19 Tax:10798
615 323-344 Species denotes Clostridium difficile Tax:1496
616 357-376 Species denotes Mycobacterium avium Tax:1764
617 378-404 Species denotes Mycobacterium tuberculosis Tax:1773
618 133-153 Disease denotes autoimmune disorders MESH:D001327
619 157-186 Disease denotes primary antibody deficiencies MESH:D000081207
620 254-260 Disease denotes sepsis MESH:D018805
621 277-286 Disease denotes infection MESH:D007239
622 298-316 Disease denotes virus encephalitis MESH:D004660
623 345-355 Disease denotes infections MESH:D007239
624 410-429 Disease denotes Nocardia infections MESH:D009617
625 445-455 Disease denotes infections MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T135 165-173 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T136 318-321 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T123 133-153 Disease denotes autoimmune disorders http://purl.obolibrary.org/obo/MONDO_0007179
T124 157-186 Disease denotes primary antibody deficiencies http://purl.obolibrary.org/obo/MONDO_0015517
T125 277-286 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T126 298-316 Disease denotes virus encephalitis http://purl.obolibrary.org/obo/MONDO_0006009
T127 304-316 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T128 323-355 Disease denotes Clostridium difficile infections http://purl.obolibrary.org/obo/MONDO_0000705
T129 392-404 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T130 410-429 Disease denotes Nocardia infections http://purl.obolibrary.org/obo/MONDO_0017776
T131 445-458 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T132 459-490 Disease denotes primary antibodies deficiencies http://purl.obolibrary.org/obo/MONDO_0015517

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T219 59-60 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T220 72-77 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T221 199-202 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T222 273-276 http://purl.obolibrary.org/obo/CLO_0001798 denotes B19
T223 298-303 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T70 78-86 http://purl.obolibrary.org/obo/OGMS_0000031 denotes diseases
T71 144-153 http://purl.obolibrary.org/obo/OGMS_0000045 denotes disorders
T72 254-260 http://purl.obolibrary.org/obo/IDO_0000636 denotes sepsis
T73 277-286 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T74 298-303 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T75 345-355 http://purl.obolibrary.org/obo/IDO_0000586 denotes infections
T76 419-429 http://purl.obolibrary.org/obo/IDO_0000586 denotes infections
T77 445-458 http://purl.obolibrary.org/obo/IDO_0000586 denotes infections in

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T166 72-77 Species denotes human NCBItxid:9606
T167 254-260 Species denotes sepsis NCBItxid:137507
T168 262-276 Species denotes Parvovirus B19 NCBItxid:10798
T169 288-303 Species denotes West Nile virus NCBItxid:11082
T170 318-321 Species denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T175 323-344 Species denotes Clostridium difficile NCBItxid:1496
T176 357-376 Species denotes Mycobacterium avium NCBItxid:1764
T177 378-404 Species denotes Mycobacterium tuberculosis NCBItxid:1773
T178 410-418 Species denotes Nocardia NCBItxid:1817

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T143 0-187 Sentence denotes IVIG is an immunomodulatory treatment currently useful for a variety of human diseases that share an idiopathic origin, ranging from autoimmune disorders to primary antibody deficiencies.
T144 188-496 Sentence denotes Also, IVIG has shown promising results in case of severe (such as sepsis, Parvovirus B19 infection, West Nile virus encephalitis, HIV, Clostridium difficile infections, Mycobacterium avium, Mycobacterium tuberculosis, and Nocardia infections) and recurrent infections in primary antibodies deficiencies [21].

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
613 72-77 Species denotes human Tax:9606
618 133-153 Disease denotes autoimmune disorders MESH:D001327
619 157-186 Disease denotes primary antibody deficiencies MESH:D000081207
620 254-260 Disease denotes sepsis MESH:D018805
614 262-276 Species denotes Parvovirus B19 Tax:10798
621 277-286 Disease denotes infection MESH:D007239
622 298-316 Disease denotes virus encephalitis MESH:D004660
615 323-344 Species denotes Clostridium difficile Tax:1496
623 345-355 Disease denotes infections MESH:D007239
616 357-376 Species denotes Mycobacterium avium Tax:1764
617 378-404 Species denotes Mycobacterium tuberculosis Tax:1773
624 410-429 Disease denotes Nocardia infections MESH:D009617
625 445-455 Disease denotes infections MESH:D007239

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1970 273-276 Protein denotes B19 https://www.uniprot.org/uniprot/P57058

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T12037 0-4 NN denotes IVIG
T52317 5-7 VBZ denotes is
T83276 8-10 DT denotes an
T47689 11-27 JJ denotes immunomodulatory
T32201 28-37 NN denotes treatment
T26744 38-47 RB denotes currently
T6595 48-54 JJ denotes useful
T61951 55-58 IN denotes for
T78252 59-60 DT denotes a
T96672 61-68 NN denotes variety
T75647 69-71 IN denotes of
T64366 72-77 JJ denotes human
T37666 78-86 NNS denotes diseases
T30663 87-91 WDT denotes that
T71611 92-97 VBP denotes share
T4369 98-100 DT denotes an
T95969 101-111 JJ denotes idiopathic
T35011 112-118 NN denotes origin
T94518 118-119 -COMMA- denotes ,
T34533 120-127 VBG denotes ranging
T57537 128-132 IN denotes from
T47481 133-143 JJ denotes autoimmune
T10634 144-153 NNS denotes disorders
T96539 154-156 TO denotes to
T18270 157-164 JJ denotes primary
T92790 165-173 NN denotes antibody
T91348 174-186 NNS denotes deficiencies
T23275 188-192 RB denotes Also
T97483 192-193 -COMMA- denotes ,
T12179 194-198 NNP denotes IVIG
T44219 199-202 VBZ denotes has
T10629 203-208 VBN denotes shown
T45168 209-218 JJ denotes promising
T67208 219-226 NNS denotes results
T77083 227-229 IN denotes in
T72909 230-234 NN denotes case
T84121 235-237 IN denotes of
T92712 238-244 JJ denotes severe
T79863 245-246 -LRB- denotes (
T66824 246-250 JJ denotes such
T43956 251-253 IN denotes as
T9832 254-260 NN denotes sepsis
T13628 260-261 -COMMA- denotes ,
T62406 262-272 NN denotes Parvovirus
T99835 273-276 NN denotes B19
T14835 277-286 NN denotes infection
T15497 286-287 -COMMA- denotes ,
T90831 288-292 NNP denotes West
T76795 293-297 NNP denotes Nile
T72325 298-303 NN denotes virus
T62294 304-316 NN denotes encephalitis
T79163 316-317 -COMMA- denotes ,
T42313 318-321 NN denotes HIV
T73958 321-322 -COMMA- denotes ,
T29310 323-334 NNP denotes Clostridium
T49447 335-344 JJ denotes difficile
T8038 345-355 NNS denotes infections
T10219 355-356 -COMMA- denotes ,
T3443 357-370 NN denotes Mycobacterium
T55185 371-376 NN denotes avium
T2677 376-377 -COMMA- denotes ,
T67405 378-391 NN denotes Mycobacterium
T65630 392-404 NN denotes tuberculosis
T60726 404-405 -COMMA- denotes ,
T52785 406-409 CC denotes and
T44446 410-418 NNP denotes Nocardia
T90848 419-429 NNS denotes infections
T80386 429-430 -RRB- denotes )
T6178 431-434 CC denotes and
T68317 435-444 JJ denotes recurrent
T17705 445-455 NNS denotes infections
T68999 456-458 IN denotes in
T18422 459-466 JJ denotes primary
T52471 467-477 NNS denotes antibodies
T62247 478-490 NNS denotes deficiencies
T55724 491-492 -LRB- denotes [
T27007 492-494 CD denotes 21
T97422 494-495 -RRB- denotes ]
R7397 T12037 T52317 arg1Of IVIG,is
R59827 T32201 T52317 arg2Of treatment,is
R45922 T32201 T83276 arg1Of treatment,an
R32666 T32201 T47689 arg1Of treatment,immunomodulatory
R38821 T32201 T26744 arg1Of treatment,currently
R80185 T26744 T6595 arg1Of currently,useful
R62385 T6595 T61951 arg1Of useful,for
R78431 T96672 T61951 arg2Of variety,for
R3964 T96672 T78252 arg1Of variety,a
R72167 T96672 T75647 arg1Of variety,of
R82814 T37666 T75647 arg2Of diseases,of
R55274 T37666 T64366 arg1Of diseases,human
R31515 T37666 T30663 arg1Of diseases,that
R12726 T37666 T71611 arg1Of diseases,share
R20851 T35011 T71611 arg2Of origin,share
R86274 T35011 T4369 arg1Of origin,an
R95215 T35011 T95969 arg1Of origin,idiopathic
R10701 T32201 T94518 arg1Of treatment,","
R19665 T32201 T34533 arg1Of treatment,ranging
R89530 T34533 T57537 arg1Of ranging,from
R77337 T10634 T57537 arg2Of disorders,from
R63281 T10634 T47481 arg1Of disorders,autoimmune
R45693 T34533 T96539 arg1Of ranging,to
R65268 T91348 T96539 arg2Of deficiencies,to
R94792 T91348 T18270 arg1Of deficiencies,primary
R91107 T91348 T92790 arg1Of deficiencies,antibody
R9941 T10629 T23275 arg1Of shown,Also
R28227 T10629 T97483 arg1Of shown,","
R92669 T12179 T44219 arg1Of IVIG,has
R31307 T10629 T44219 arg2Of shown,has
R77637 T12179 T10629 arg1Of IVIG,shown
R23512 T67208 T10629 arg2Of results,shown
R8504 T67208 T45168 arg1Of results,promising
R20697 T67208 T77083 arg1Of results,in
R78894 T72909 T77083 arg2Of case,in
R82064 T72909 T84121 arg1Of case,of
R98709 T6178 T84121 arg2Of and,of
R28624 T52785 T92712 arg1Of and,severe
R80380 T52785 T79863 arg2Of and,(
R24626 T80386 T79863 arg3Of ),(
R19944 T43956 T66824 arg1Of as,such
R49580 T52785 T43956 arg1Of and,as
R37840 T13628 T43956 arg2Of ",",as
R28995 T9832 T13628 arg1Of sepsis,","
R16863 T14835 T13628 arg2Of infection,","
R40263 T14835 T62406 arg1Of infection,Parvovirus
R95673 T14835 T99835 arg1Of infection,B19
R52070 T13628 T15497 arg1Of ",",","
R13275 T62294 T15497 arg2Of encephalitis,","
R22619 T76795 T90831 arg1Of Nile,West
R23224 T62294 T76795 arg1Of encephalitis,Nile
R99263 T62294 T72325 arg1Of encephalitis,virus
R15788 T62294 T79163 arg1Of encephalitis,","
R54321 T42313 T79163 arg2Of HIV,","
R99309 T52785 T73958 arg1Of and,","
R85642 T8038 T29310 arg1Of infections,Clostridium
R55554 T8038 T49447 arg1Of infections,difficile
R94197 T8038 T10219 arg1Of infections,","
R30216 T55185 T10219 arg2Of avium,","
R46944 T55185 T3443 arg1Of avium,Mycobacterium
R36023 T10219 T2677 arg1Of ",",","
R30475 T65630 T2677 arg2Of tuberculosis,","
R32473 T65630 T67405 arg1Of tuberculosis,Mycobacterium
R79700 T52785 T60726 arg1Of and,","
R5424 T2677 T52785 arg1Of ",",and
R82963 T90848 T52785 arg2Of infections,and
R12367 T90848 T44446 arg1Of infections,Nocardia
R36176 T52785 T6178 arg1Of and,and
R5432 T17705 T6178 arg2Of infections,and
R7624 T17705 T68317 arg1Of infections,recurrent
R48790 T6178 T68999 arg1Of and,in
R33893 T62247 T68999 arg2Of deficiencies,in
R41252 T62247 T18422 arg1Of deficiencies,primary
R34450 T62247 T52471 arg1Of deficiencies,antibodies
R24969 T62247 T55724 arg1Of deficiencies,[
R29860 T27007 T55724 arg2Of 21,[
R45347 T97422 T55724 arg3Of ],[

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T135 165-173 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T136 318-321 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T119 133-153 Disease denotes autoimmune disorders http://purl.obolibrary.org/obo/MONDO_0007179
T120 157-186 Disease denotes primary antibody deficiencies http://purl.obolibrary.org/obo/MONDO_0015517
T121 277-286 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T122 298-316 Disease denotes virus encephalitis http://purl.obolibrary.org/obo/MONDO_0006009
T123 323-355 Disease denotes Clostridium difficile infections http://purl.obolibrary.org/obo/MONDO_0000705
T124 392-404 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T125 410-429 Disease denotes Nocardia infections http://purl.obolibrary.org/obo/MONDO_0017776
T126 445-458 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T127 459-490 Disease denotes primary antibodies deficiencies http://purl.obolibrary.org/obo/MONDO_0015517

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 133-153 Phenotype denotes autoimmune disorders http://purl.obolibrary.org/obo/HP_0002960
T5 254-260 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T6 304-316 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T7 435-455 Phenotype denotes recurrent infections http://purl.obolibrary.org/obo/HP_0002719

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T143 0-187 Sentence denotes IVIG is an immunomodulatory treatment currently useful for a variety of human diseases that share an idiopathic origin, ranging from autoimmune disorders to primary antibody deficiencies.
T144 188-496 Sentence denotes Also, IVIG has shown promising results in case of severe (such as sepsis, Parvovirus B19 infection, West Nile virus encephalitis, HIV, Clostridium difficile infections, Mycobacterium avium, Mycobacterium tuberculosis, and Nocardia infections) and recurrent infections in primary antibodies deficiencies [21].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 133-153 Phenotype denotes autoimmune disorders http://purl.obolibrary.org/obo/HP_0002960
T5 254-260 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T6 304-316 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383
T7 435-455 Phenotype denotes recurrent infections http://purl.obolibrary.org/obo/HP_0002719