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PMC:7205724 / 15697-15946 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
511 220-227 Gene denotes TMPRSS2 Gene:7113
512 200-201 Gene denotes S Gene:43740568
513 187-188 Gene denotes S Gene:43740568
514 142-143 Gene denotes S Gene:43740568
522 12-17 Species denotes human Tax:9606
523 63-68 Species denotes human Tax:9606
524 135-141 Species denotes SARS-2 Tax:2697049
525 193-199 Species denotes SARS-2 Tax:2697049
531 124-130 Chemical denotes SARS-S
532 18-29 Disease denotes lung cancer MESH:D008175
533 234-248 Disease denotes lung infection MESH:D012141
537 40-46 CellLine denotes Calu-3 CVCL:0609

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T120 18-22 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T121 30-34 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T122 69-73 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T123 74-79 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T124 234-238 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T9 18-22 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 69-73 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 234-238 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T98 18-29 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T99 23-29 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T100 124-128 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T101 135-139 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 182-186 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T103 193-197 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T104 239-248 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T196 12-17 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T197 18-22 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T198 18-22 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T199 23-39 http://purl.obolibrary.org/obo/OBI_0001906 denotes cancer cell line
T200 23-39 http://www.ebi.ac.uk/cellline#cancer_cell_line denotes cancer cell line
T201 40-46 http://purl.obolibrary.org/obo/CLO_0002192 denotes Calu-3
T202 63-68 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T203 69-73 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T204 69-73 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T205 74-79 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T206 91-92 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T207 232-233 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 234-238 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T209 234-238 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T154 147-164 Chemical denotes camostat mesylate http://purl.obolibrary.org/obo/CHEBI_135632

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T66 30-34 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T67 74-79 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T68 239-248 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T102 147-164 Chemical denotes camostat mesylate http://purl.obolibrary.org/obo/CHEBI_135632

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T131 12-17 Species denotes human NCBItxid:9606
T132 63-68 Species denotes human NCBItxid:9606
T133 124-128 Species denotes SARS NCBItxid:694009
T134 135-141 Species denotes SARS-2 NCBItxid:2697049
T135 182-186 Species denotes SARS NCBItxid:694009
T136 193-199 Species denotes SARS-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T125 0-249 Sentence denotes In both the human lung cancer cell line Calu-3 and the primary human lung cells, there was a reduction of the entry of both SARS-S and SARS-2-S by camostat mesylate, indicating that SARS-S and SARS-2-S partially require TMPRSS2 for a lung infection.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T9 18-22 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 69-73 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 234-238 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
522 12-17 Species denotes human Tax:9606
532 18-29 Disease denotes lung cancer MESH:D008175
537 40-46 CellLine denotes Calu-3 CVCL:0609
523 63-68 Species denotes human Tax:9606
531 124-130 Chemical denotes SARS-S
524 135-141 Species denotes SARS-2 Tax:2697049
514 142-143 Gene denotes S Gene:43740568
513 187-188 Gene denotes S Gene:43740568
525 193-199 Species denotes SARS-2 Tax:2697049
512 200-201 Gene denotes S Gene:43740568
511 220-227 Gene denotes TMPRSS2 Gene:7113
533 234-248 Disease denotes lung infection MESH:D012141

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T57582 0-2 IN denotes In
T21513 3-7 CC denotes both
T67184 8-11 DT denotes the
T39137 12-17 JJ denotes human
T99828 18-22 NN denotes lung
T68094 23-29 NN denotes cancer
T76607 30-34 NN denotes cell
T55102 35-39 NN denotes line
T50829 40-46 NN denotes Calu-3
T53491 47-50 CC denotes and
T43867 51-54 DT denotes the
T21723 55-62 JJ denotes primary
T29104 63-68 JJ denotes human
T3411 69-73 NN denotes lung
T60390 74-79 NNS denotes cells
T81391 79-80 -COMMA- denotes ,
T33129 81-86 EX denotes there
T59040 87-90 VBD denotes was
T39475 91-92 DT denotes a
T15256 93-102 NN denotes reduction
T39714 103-105 IN denotes of
T49107 106-109 DT denotes the
T3461 110-115 NN denotes entry
T40063 116-118 IN denotes of
T3764 119-123 CC denotes both
T3726 124-130 NN denotes SARS-S
T74021 131-134 CC denotes and
T38308 135-143 NN denotes SARS-2-S
T3019 144-146 IN denotes by
T41127 147-155 NN denotes camostat
T6987 156-164 NN denotes mesylate
T21310 164-165 -COMMA- denotes ,
T88073 166-176 VBG denotes indicating
T47825 177-181 IN denotes that
T44262 182-188 NN denotes SARS-S
T25723 189-192 CC denotes and
T39073 193-201 NN denotes SARS-2-S
T85073 202-211 RB denotes partially
T75386 212-219 VBP denotes require
T13575 220-227 NN denotes TMPRSS2
T81091 228-231 IN denotes for
T10997 232-233 DT denotes a
T93402 234-238 NN denotes lung
T86423 239-248 NN denotes infection
R50675 T59040 T57582 arg1Of was,In
R53466 T53491 T57582 arg2Of and,In
R37154 T50829 T21513 arg1Of Calu-3,both
R62865 T50829 T67184 arg1Of Calu-3,the
R56677 T50829 T39137 arg1Of Calu-3,human
R60172 T50829 T99828 arg1Of Calu-3,lung
R46163 T50829 T68094 arg1Of Calu-3,cancer
R15634 T50829 T76607 arg1Of Calu-3,cell
R2145 T50829 T55102 arg1Of Calu-3,line
R85549 T50829 T53491 arg1Of Calu-3,and
R71267 T60390 T53491 arg2Of cells,and
R59330 T60390 T43867 arg1Of cells,the
R13617 T60390 T21723 arg1Of cells,primary
R55335 T60390 T29104 arg1Of cells,human
R72699 T60390 T3411 arg1Of cells,lung
R75974 T59040 T81391 arg1Of was,","
R94945 T33129 T59040 arg1Of there,was
R68501 T15256 T59040 arg2Of reduction,was
R46469 T15256 T39475 arg1Of reduction,a
R31926 T15256 T39714 arg1Of reduction,of
R23449 T3461 T39714 arg2Of entry,of
R9006 T3461 T49107 arg1Of entry,the
R61909 T3461 T40063 arg1Of entry,of
R78407 T74021 T40063 arg2Of and,of
R6883 T74021 T3764 arg1Of and,both
R64616 T3726 T74021 arg1Of SARS-S,and
R99403 T38308 T74021 arg2Of SARS-2-S,and
R18077 T74021 T3019 arg1Of and,by
R83600 T6987 T3019 arg2Of mesylate,by
R37625 T6987 T41127 arg1Of mesylate,camostat
R62097 T59040 T21310 arg1Of was,","
R52910 T75386 T88073 arg2Of require,indicating
R91702 T59040 T88073 modOf was,indicating
R20369 T75386 T47825 arg1Of require,that
R49427 T44262 T25723 arg1Of SARS-S,and
R32622 T39073 T25723 arg2Of SARS-2-S,and
R88200 T75386 T85073 arg1Of require,partially
R57198 T25723 T75386 arg1Of and,require
R51838 T13575 T75386 arg2Of TMPRSS2,require
R63159 T75386 T81091 arg1Of require,for
R47359 T86423 T81091 arg2Of infection,for
R80027 T86423 T10997 arg1Of infection,a
R49758 T86423 T93402 arg1Of infection,lung

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T2 18-22 http://purl.obolibrary.org/obo/MAT_0000135 denotes lung
T3 69-73 http://purl.obolibrary.org/obo/MAT_0000135 denotes lung
T4 234-238 http://purl.obolibrary.org/obo/MAT_0000135 denotes lung

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T120 18-22 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T121 30-34 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T122 69-73 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T123 74-79 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T124 234-238 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T95 18-29 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T96 124-128 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 135-139 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T98 182-186 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 193-197 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T100 239-248 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 18-29 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T125 0-249 Sentence denotes In both the human lung cancer cell line Calu-3 and the primary human lung cells, there was a reduction of the entry of both SARS-S and SARS-2-S by camostat mesylate, indicating that SARS-S and SARS-2-S partially require TMPRSS2 for a lung infection.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 18-29 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526