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PMC:7205724 / 12518-14221 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
419 533-536 Gene denotes Rp3 Gene:22924
420 759-764 Gene denotes spike Gene:43740568
421 964-969 Gene denotes spike Gene:43740568
422 1475-1478 Gene denotes Rp3 Gene:22924
423 1093-1096 Gene denotes Rp3 Gene:22924
424 132-146 Species denotes horseshoe bats Tax:49442
425 275-283 Species denotes SARS-CoV Tax:694009
426 390-398 Species denotes SARS-CoV Tax:694009
427 529-532 Species denotes CoV Tax:11118
428 565-573 Species denotes SARS-CoV Tax:694009
429 655-663 Species denotes SARS-CoV Tax:694009
430 747-758 Species denotes coronavirus Tax:11118
431 829-842 Species denotes coronaviruses Tax:11118
432 1058-1063 Species denotes human Tax:9606
433 1064-1072 Species denotes SARS-CoV Tax:694009
434 1089-1092 Species denotes CoV Tax:11118
435 1371-1376 Species denotes human Tax:9606
436 1377-1385 Species denotes SARS-CoV Tax:694009
437 1471-1474 Species denotes CoV Tax:11118
438 1694-1702 Species denotes SARS-CoV Tax:694009
439 190-198 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T90 24-29 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T91 199-207 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T92 320-328 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T93 477-487 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T94 510-517 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T95 635-641 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 705-709 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T97 765-772 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 1006-1019 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T99 1045-1052 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 1143-1151 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T101 1172-1179 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 1336-1350 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T103 1336-1340 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 24-29 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T77 68-76 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 190-198 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T79 275-283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 390-398 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 565-573 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 655-663 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 1064-1072 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 1377-1385 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 1694-1702 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T136 90-94 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T137 142-146 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T138 363-366 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T139 414-415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 705-709 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T141 730-732 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T142 993-1001 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T143 1058-1063 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T144 1082-1085 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T145 1219-1221 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T146 1277-1279 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T147 1277-1279 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T148 1336-1340 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T149 1341-1350 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T150 1371-1376 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T151 1404-1405 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 1445-1447 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T153 1464-1467 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T154 1601-1604 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T126 320-328 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T127 477-487 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T128 526-528 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T129 765-772 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T130 1006-1019 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T131 1045-1052 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T132 1086-1088 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T133 1143-1151 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T134 1172-1179 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T135 1277-1279 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T136 1468-1470 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T9 214-239 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes Polymerase chain reaction http://purl.bioontology.org/ontology/MEDDRA/10050967
T10 241-244 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes PCR http://purl.bioontology.org/ontology/MEDDRA/10050967
T11 1172-1181 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes protein S http://purl.bioontology.org/ontology/MEDDRA/10050417

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T51 915-925 http://purl.obolibrary.org/obo/IDO_0000607 denotes production
T52 1331-1335 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T53 1336-1340 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T54 1527-1537 http://purl.obolibrary.org/obo/BFO_0000034 denotes functional

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T87 320-328 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T88 477-487 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T89 765-772 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T90 1006-1019 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T91 1045-1052 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T92 1143-1151 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T93 1172-1179 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T101 68-76 Species denotes SARS-CoV NCBItxid:694009
T102 90-94 Species denotes bats NCBItxid:9397
T103 119-130 Species denotes Rhinolophus NCBItxid:49442
T104 132-146 Species denotes horseshoe bats NCBItxid:49442
T105 163-176 Species denotes Rhinolophidae NCBItxid:58055
T106 190-198 Species denotes SARS-CoV NCBItxid:694009
T107 275-283 Species denotes SARS-CoV NCBItxid:694009
T108 363-366 Species denotes bat NCBItxid:9397
T109 390-398 Species denotes SARS-CoV NCBItxid:694009
T110 565-573 Species denotes SARS-CoV NCBItxid:694009
T111 655-663 Species denotes SARS-CoV NCBItxid:694009
T112 1058-1072 Species denotes human SARS-CoV NCBItxid:694009
T113 1082-1085 Species denotes bat NCBItxid:9397
T114 1371-1385 Species denotes human SARS-CoV NCBItxid:694009
T115 1464-1467 Species denotes bat NCBItxid:9397
T116 1601-1604 Species denotes bat NCBItxid:9397
T117 1694-1702 Species denotes SARS-CoV NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T104 0-19 Sentence denotes 4.1.2.2 Rationale:
T105 20-76 Sentence denotes Bat serum is not able to efficiently neutralize SARS-CoV
T106 77-213 Sentence denotes The range of bats, belonging to the genus Rhinolophus (horseshoe bats) and the family Rhinolophidae, produce the SARS-CoV antibody [12].
T107 214-404 Sentence denotes Polymerase chain reaction (PCR) will confirm the presence of SARS-CoV nucleocapsid (N) and polymerase (P) proteins in fecal samples if an individual bat being seropositive for SARS-CoV [12].
T108 405-611 Sentence denotes There is a significant degree of resemblance of greater than 90% in the nucleotide sequence of the viral genomes between SL-CoV Rp3 [12] and the Tor2 strain of SARS-CoV – which was isolated in Toronto [15].
T109 612-824 Sentence denotes The differences in the genome sequences of SARS-CoV in the two species occur merely in the S gene – which encodes the S1 domain of the coronavirus spike protein and contains regions with high mutation rates [12].
T110 825-1053 Sentence denotes The coronaviruses commonly possess five open reading frames (ORF) that correlate with the production of the replicase polyprotein (P), the spike (S), envelope (E), and membrane (M) glycoproteins and the nucleocapsid (N) protein.
T111 1054-1211 Sentence denotes The human SARS-CoV Tor2 and bat SL-CoV Rp3 strains remain more than 90% identical at the proteins P, E, M, and N. the protein S consists of two main domains:
T112 1212-1351 Sentence denotes 1) the S1 domain conveys the role of receptor binding and 2) the S2 domain assumes the role of the fusion of viral and host-cell membranes.
T113 1352-1486 Sentence denotes In particular, the human SARS-CoV Tor2 strain shows a noticeable degree of difference in the S1 domain from the bat SL-CoV Rp3 strain.
T114 1487-1703 Sentence denotes This diversity would suffice to produce functional differences between the species, and is an apparent reason why bat sera having high levels of cross-reactive antibodies not acted efficiently to neutralize SARS-CoV.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 24-29 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
424 132-146 Species denotes horseshoe bats Tax:49442
439 190-198 Species denotes SARS-CoV Tax:694009
425 275-283 Species denotes SARS-CoV Tax:694009
426 390-398 Species denotes SARS-CoV Tax:694009
427 529-532 Species denotes CoV Tax:11118
419 533-536 Gene denotes Rp3 Gene:22924
428 565-573 Species denotes SARS-CoV Tax:694009
429 655-663 Species denotes SARS-CoV Tax:694009
430 747-758 Species denotes coronavirus Tax:11118
420 759-764 Gene denotes spike Gene:43740568
431 829-842 Species denotes coronaviruses Tax:11118
421 964-969 Gene denotes spike Gene:43740568
432 1058-1063 Species denotes human Tax:9606
433 1064-1072 Species denotes SARS-CoV Tax:694009
434 1089-1092 Species denotes CoV Tax:11118
423 1093-1096 Gene denotes Rp3 Gene:22924
435 1371-1376 Species denotes human Tax:9606
436 1377-1385 Species denotes SARS-CoV Tax:694009
437 1471-1474 Species denotes CoV Tax:11118
422 1475-1478 Gene denotes Rp3 Gene:22924
438 1694-1702 Species denotes SARS-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1299 759-772 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T1300 933-954 Protein denotes replicase polyprotein https://www.uniprot.org/uniprot/Q9IJX4|https://www.uniprot.org/uniprot/Q9DSN9|https://www.uniprot.org/uniprot/O36966
T1303 1006-1019 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8
T1388 1041-1052 Protein denotes (N) protein https://www.uniprot.org/uniprot/Q01552|https://www.uniprot.org/uniprot/P0C797|https://www.uniprot.org/uniprot/P0C796
T1391 1172-1181 Protein denotes protein S https://www.uniprot.org/uniprot/Q3T4M2|https://www.uniprot.org/uniprot/Q01209|https://www.uniprot.org/uniprot/Q00844|https://www.uniprot.org/uniprot/P35958|https://www.uniprot.org/uniprot/P27392|https://www.uniprot.org/uniprot/P23429|https://www.uniprot.org/uniprot/P23428|https://www.uniprot.org/uniprot/P22175|https://www.uniprot.org/uniprot/P21125|https://www.uniprot.org/uniprot/P21124|https://www.uniprot.org/uniprot/P16904|https://www.uniprot.org/uniprot/P03408

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T69872 0-7 CD denotes 4.1.2.2
T72014 9-18 NNP denotes Rationale
T36633 18-19 -COLON- denotes :
T95726 20-23 NN denotes Bat
T12601 24-29 NN denotes serum
T14267 30-32 VBZ denotes is
T39971 33-36 RB denotes not
T40602 37-41 JJ denotes able
T35003 42-44 TO denotes to
T99887 45-56 RB denotes efficiently
T76540 57-67 VB denotes neutralize
T13120 68-76 NN denotes SARS-CoV
T35896 77-80 DT denotes The
T64598 81-86 NN denotes range
T32273 87-89 IN denotes of
T17280 90-94 NNS denotes bats
T96367 94-95 -COMMA- denotes ,
T68610 96-105 VBG denotes belonging
T26256 106-108 TO denotes to
T16732 109-112 DT denotes the
T46544 113-118 NN denotes genus
T77475 119-130 NN denotes Rhinolophus
T40616 131-132 -LRB- denotes (
T58340 132-141 NN denotes horseshoe
T54336 142-146 NNS denotes bats
T12834 146-147 -RRB- denotes )
T98779 148-151 CC denotes and
T38088 152-155 DT denotes the
T30678 156-162 NN denotes family
T95468 163-176 NNP denotes Rhinolophidae
T49538 176-177 -COMMA- denotes ,
T57549 178-185 VBP denotes produce
T22931 186-189 DT denotes the
T96372 190-198 JJ denotes SARS-CoV
T96617 199-207 NN denotes antibody
T26331 208-209 -LRB- denotes [
T79958 209-211 CD denotes 12
T94954 211-212 -RRB- denotes ]
T31150 214-224 NN denotes Polymerase
T34558 225-230 NN denotes chain
T29624 231-239 NN denotes reaction
T20040 240-241 -LRB- denotes (
T66963 241-244 NN denotes PCR
T86417 244-245 -RRB- denotes )
T74170 246-250 MD denotes will
T58244 251-258 VB denotes confirm
T34209 259-262 DT denotes the
T81644 263-271 NN denotes presence
T94659 272-274 IN denotes of
T93490 275-283 NN denotes SARS-CoV
T60580 284-296 NN denotes nucleocapsid
T19399 297-298 -LRB- denotes (
T43412 298-299 NN denotes N
T97174 299-300 -RRB- denotes )
T57901 301-304 CC denotes and
T74666 305-315 NN denotes polymerase
T46614 316-317 -LRB- denotes (
T2670 317-318 NN denotes P
T11868 318-319 -RRB- denotes )
T4452 320-328 NNS denotes proteins
T18709 329-331 IN denotes in
T53625 332-337 JJ denotes fecal
T33015 338-345 NNS denotes samples
T22237 346-348 IN denotes if
T47566 349-351 DT denotes an
T64813 352-362 JJ denotes individual
T7157 363-366 NN denotes bat
T16625 367-372 VBG denotes being
T28791 373-385 JJ denotes seropositive
T57534 386-389 IN denotes for
T8160 390-398 NN denotes SARS-CoV
T13336 399-400 -LRB- denotes [
T37204 400-402 CD denotes 12
T59200 402-403 -RRB- denotes ]
T53492 405-410 EX denotes There
T25066 411-413 VBZ denotes is
T54103 414-415 DT denotes a
T67673 416-427 JJ denotes significant
T81378 428-434 NN denotes degree
T78835 435-437 IN denotes of
T5389 438-449 NN denotes resemblance
T55726 450-452 IN denotes of
T9133 453-460 JJR denotes greater
T51866 461-465 IN denotes than
T67947 466-468 CD denotes 90
T67121 468-469 NN denotes %
T42920 470-472 IN denotes in
T98118 473-476 DT denotes the
T35947 477-487 NN denotes nucleotide
T39927 488-496 NN denotes sequence
T7432 497-499 IN denotes of
T69163 500-503 DT denotes the
T80745 504-509 JJ denotes viral
T20946 510-517 NNS denotes genomes
T60639 518-525 IN denotes between
T51508 526-532 NN denotes SL-CoV
T38342 533-536 NN denotes Rp3
T27996 537-538 -LRB- denotes [
T68906 538-540 CD denotes 12
T31717 540-541 -RRB- denotes ]
T45580 542-545 CC denotes and
T28138 546-549 DT denotes the
T93675 550-554 NN denotes Tor2
T7628 555-561 NN denotes strain
T18229 562-564 IN denotes of
T74591 565-573 NN denotes SARS-CoV
T32520 574-575 NN denotes –
T53721 576-581 WDT denotes which
T18272 582-585 VBD denotes was
T81326 586-594 VBN denotes isolated
T85814 595-597 IN denotes in
T8090 598-605 NNP denotes Toronto
T96099 606-607 -LRB- denotes [
T48626 607-609 CD denotes 15
T63640 609-610 -RRB- denotes ]
T47685 612-615 DT denotes The
T95952 616-627 NNS denotes differences
T83153 628-630 IN denotes in
T89898 631-634 DT denotes the
T5455 635-641 NN denotes genome
T57783 642-651 NNS denotes sequences
T32904 652-654 IN denotes of
T64654 655-663 NN denotes SARS-CoV
T33080 664-666 IN denotes in
T20399 667-670 DT denotes the
T6021 671-674 CD denotes two
T91889 675-682 NNS denotes species
T16420 683-688 VBP denotes occur
T17928 689-695 RB denotes merely
T18957 696-698 IN denotes in
T30016 699-702 DT denotes the
T55882 703-704 NN denotes S
T98573 705-709 NN denotes gene
T52934 710-711 NN denotes –
T45076 712-717 WDT denotes which
T16269 718-725 VBZ denotes encodes
T35597 726-729 DT denotes the
T87578 730-732 NN denotes S1
T90762 733-739 NN denotes domain
T47778 740-742 IN denotes of
T34405 743-746 DT denotes the
T12863 747-758 NN denotes coronavirus
T32427 759-764 NN denotes spike
T45316 765-772 NN denotes protein
T15815 773-776 CC denotes and
T13365 777-785 VBZ denotes contains
T22966 786-793 NNS denotes regions
T35366 794-798 IN denotes with
T87135 799-803 JJ denotes high
T71483 804-812 NN denotes mutation
T52732 813-818 NNS denotes rates
T42165 819-820 -LRB- denotes [
T12526 820-822 CD denotes 12
T31829 822-823 -RRB- denotes ]
T48594 825-828 DT denotes The
T43996 829-842 NNS denotes coronaviruses
T64690 843-851 RB denotes commonly
T94005 852-859 VBP denotes possess
T52748 860-864 CD denotes five
T25177 865-869 JJ denotes open
T13269 870-877 NN denotes reading
T8033 878-884 NNS denotes frames
T6150 885-886 -LRB- denotes (
T75001 886-889 NN denotes ORF
T23258 889-890 -RRB- denotes )
T31588 891-895 WDT denotes that
T98349 896-905 VBP denotes correlate
T84544 906-910 IN denotes with
T88926 911-914 DT denotes the
T71973 915-925 NN denotes production
T7216 926-928 IN denotes of
T15921 929-932 DT denotes the
T20599 933-942 NN denotes replicase
T83272 943-954 NN denotes polyprotein
T61529 955-956 -LRB- denotes (
T58827 956-957 NN denotes P
T90447 957-958 -RRB- denotes )
T70573 958-959 -COMMA- denotes ,
T42366 960-963 DT denotes the
T58682 964-969 NN denotes spike
T13646 970-971 -LRB- denotes (
T70419 971-972 NN denotes S
T16399 972-973 -RRB- denotes )
T28149 973-974 -COMMA- denotes ,
T93891 975-983 NN denotes envelope
T12498 984-985 -LRB- denotes (
T49731 985-986 NN denotes E
T56677 986-987 -RRB- denotes )
T64104 987-988 -COMMA- denotes ,
T31208 989-992 CC denotes and
T67550 993-1001 NN denotes membrane
T28810 1002-1003 -LRB- denotes (
T38106 1003-1004 NN denotes M
T30434 1004-1005 -RRB- denotes )
T87007 1006-1019 NNS denotes glycoproteins
T95580 1020-1023 CC denotes and
T76152 1024-1027 DT denotes the
T84704 1028-1040 NN denotes nucleocapsid
T19426 1041-1042 -LRB- denotes (
T15241 1042-1043 NN denotes N
T55062 1043-1044 -RRB- denotes )
T28738 1045-1052 NN denotes protein
T87202 1054-1057 DT denotes The
T16130 1058-1063 JJ denotes human
T9407 1064-1072 NN denotes SARS-CoV
T28228 1073-1077 NN denotes Tor2
T71564 1078-1081 CC denotes and
T14942 1082-1085 NN denotes bat
T87890 1086-1092 NN denotes SL-CoV
T92515 1093-1096 NN denotes Rp3
T40210 1097-1104 NNS denotes strains
T99566 1105-1111 VBP denotes remain
T25851 1112-1116 JJR denotes more
T93008 1117-1121 IN denotes than
T9385 1122-1124 CD denotes 90
T64424 1124-1125 NN denotes %
T39551 1126-1135 JJ denotes identical
T74931 1136-1138 IN denotes at
T24944 1139-1142 DT denotes the
T54178 1143-1151 NNS denotes proteins
T40259 1152-1153 NN denotes P
T38116 1153-1154 -COMMA- denotes ,
T14257 1155-1156 NN denotes E
T31483 1156-1157 -COMMA- denotes ,
T90324 1158-1159 NN denotes M
T13349 1159-1160 -COMMA- denotes ,
T43323 1161-1164 CC denotes and
T37619 1165-1167 NNP denotes N.
T58268 1168-1171 DT denotes the
T53333 1172-1179 NN denotes protein
T21482 1180-1181 NN denotes S
T15154 1182-1190 VBZ denotes consists
T15378 1191-1193 IN denotes of
T8893 1194-1197 CD denotes two
T80047 1198-1202 JJ denotes main
T39154 1203-1210 NNS denotes domains
T63966 1210-1211 -COLON- denotes :
T14525 1212-1213 LS denotes 1
T24485 1213-1214 -RRB- denotes )
T14573 1215-1218 DT denotes the
T2720 1219-1221 NN denotes S1
T53057 1222-1228 NN denotes domain
T52808 1229-1236 VBZ denotes conveys
T40693 1237-1240 DT denotes the
T99923 1241-1245 NN denotes role
T37838 1246-1248 IN denotes of
T16526 1249-1257 NN denotes receptor
T67511 1258-1265 NN denotes binding
T34590 1266-1269 CC denotes and
T11269 1270-1271 LS denotes 2
T5490 1271-1272 -RRB- denotes )
T64378 1273-1276 DT denotes the
T5826 1277-1279 NN denotes S2
T79439 1280-1286 NN denotes domain
T56787 1287-1294 VBZ denotes assumes
T43097 1295-1298 DT denotes the
T86961 1299-1303 NN denotes role
T18963 1304-1306 IN denotes of
T97770 1307-1310 DT denotes the
T77887 1311-1317 NN denotes fusion
T55259 1318-1320 IN denotes of
T85369 1321-1326 JJ denotes viral
T77390 1327-1330 CC denotes and
T15313 1331-1340 NN denotes host-cell
T74327 1341-1350 NNS denotes membranes
T22912 1352-1354 IN denotes In
T58392 1355-1365 JJ denotes particular
T84749 1365-1366 -COMMA- denotes ,
T94019 1367-1370 DT denotes the
T82008 1371-1376 JJ denotes human
T43891 1377-1385 NN denotes SARS-CoV
T54296 1386-1390 NN denotes Tor2
T34731 1391-1397 NN denotes strain
T75489 1398-1403 VBZ denotes shows
T56235 1404-1405 DT denotes a
T89657 1406-1416 JJ denotes noticeable
T75815 1417-1423 NN denotes degree
T92988 1424-1426 IN denotes of
T77130 1427-1437 NN denotes difference
T40843 1438-1440 IN denotes in
T41545 1441-1444 DT denotes the
T39219 1445-1447 NN denotes S1
T50007 1448-1454 NN denotes domain
T5367 1455-1459 IN denotes from
T8711 1460-1463 DT denotes the
T66860 1464-1467 NN denotes bat
T62453 1468-1474 NN denotes SL-CoV
T71117 1475-1478 NN denotes Rp3
T88382 1479-1485 NN denotes strain
T88085 1487-1491 DT denotes This
T48832 1492-1501 NN denotes diversity
T76304 1502-1507 MD denotes would
T15359 1508-1515 VB denotes suffice
T62259 1516-1518 TO denotes to
T18888 1519-1526 VB denotes produce
T72744 1527-1537 JJ denotes functional
T24144 1538-1549 NNS denotes differences
T88673 1550-1557 IN denotes between
T38511 1558-1561 DT denotes the
T76844 1562-1569 NNS denotes species
T33948 1569-1570 -COMMA- denotes ,
T64840 1571-1574 CC denotes and
T43993 1575-1577 VBZ denotes is
T4517 1578-1580 DT denotes an
T84855 1581-1589 JJ denotes apparent
T42902 1590-1596 NN denotes reason
T40921 1597-1600 WRB denotes why
T70648 1601-1604 NN denotes bat
T53907 1605-1609 NNS denotes sera
T57340 1610-1616 VBG denotes having
T85409 1617-1621 JJ denotes high
T54783 1622-1628 NNS denotes levels
T45640 1629-1631 IN denotes of
T58628 1632-1646 JJ denotes cross-reactive
T52676 1647-1657 NNS denotes antibodies
T45941 1658-1661 RB denotes not
T27008 1662-1667 VBD denotes acted
T78461 1668-1679 RB denotes efficiently
T42258 1680-1682 TO denotes to
T33747 1683-1693 VB denotes neutralize
T77904 1694-1702 NN denotes SARS-CoV
R32155 T28738 T95580 arg2Of protein,and
R84305 T84704 T76152 arg1Of nucleocapsid,the
R38913 T28738 T84704 arg1Of protein,nucleocapsid
R79602 T84704 T19426 arg1Of nucleocapsid,(
R89343 T15241 T19426 arg2Of N,(
R51801 T72014 T69872 arg1Of Rationale,4.1.2.2
R69842 T72014 T36633 arg1Of Rationale,:
R50103 T12601 T95726 arg1Of serum,Bat
R3232 T12601 T14267 arg1Of serum,is
R29891 T40602 T14267 arg2Of able,is
R34824 T14267 T39971 arg1Of is,not
R55122 T12601 T40602 arg1Of serum,able
R34792 T76540 T40602 arg2Of neutralize,able
R85229 T76540 T35003 arg1Of neutralize,to
R44114 T76540 T99887 arg1Of neutralize,efficiently
R91747 T12601 T76540 arg1Of serum,neutralize
R74972 T13120 T76540 arg2Of SARS-CoV,neutralize
R31648 T64598 T35896 arg1Of range,The
R6737 T64598 T32273 arg1Of range,of
R29965 T17280 T32273 arg2Of bats,of
R8521 T64598 T96367 arg1Of range,","
R75414 T64598 T68610 arg1Of range,belonging
R52920 T68610 T26256 arg1Of belonging,to
R25043 T98779 T26256 arg2Of and,to
R63472 T77475 T16732 arg1Of Rhinolophus,the
R84668 T77475 T46544 arg1Of Rhinolophus,genus
R37239 T77475 T40616 arg1Of Rhinolophus,(
R4822 T54336 T40616 arg2Of bats,(
R79578 T12834 T40616 arg3Of ),(
R13846 T54336 T58340 arg1Of bats,horseshoe
R16448 T77475 T98779 arg1Of Rhinolophus,and
R69810 T95468 T98779 arg2Of Rhinolophidae,and
R98693 T95468 T38088 arg1Of Rhinolophidae,the
R42265 T95468 T30678 arg1Of Rhinolophidae,family
R72891 T57549 T49538 arg1Of produce,","
R35854 T64598 T57549 arg1Of range,produce
R82422 T96617 T57549 arg2Of antibody,produce
R44599 T96617 T22931 arg1Of antibody,the
R79816 T96617 T96372 arg1Of antibody,SARS-CoV
R16846 T57549 T26331 arg1Of produce,[
R65903 T79958 T26331 arg2Of 12,[
R83493 T94954 T26331 arg3Of ],[
R87454 T29624 T31150 arg1Of reaction,Polymerase
R47188 T29624 T34558 arg1Of reaction,chain
R23123 T29624 T20040 arg1Of reaction,(
R56055 T66963 T20040 arg2Of PCR,(
R41002 T86417 T20040 arg3Of ),(
R3787 T29624 T74170 arg1Of reaction,will
R27411 T58244 T74170 arg2Of confirm,will
R79509 T29624 T58244 arg1Of reaction,confirm
R60124 T81644 T58244 arg2Of presence,confirm
R46480 T81644 T34209 arg1Of presence,the
R95610 T81644 T94659 arg1Of presence,of
R9378 T4452 T94659 arg2Of proteins,of
R84386 T60580 T93490 arg1Of nucleocapsid,SARS-CoV
R43418 T4452 T60580 arg1Of proteins,nucleocapsid
R27190 T60580 T19399 arg1Of nucleocapsid,(
R12230 T43412 T19399 arg2Of N,(
R48861 T97174 T19399 arg3Of ),(
R70394 T60580 T57901 arg1Of nucleocapsid,and
R41419 T74666 T57901 arg2Of polymerase,and
R80630 T4452 T74666 arg1Of proteins,polymerase
R36020 T74666 T46614 arg1Of polymerase,(
R92245 T2670 T46614 arg2Of P,(
R83183 T11868 T46614 arg3Of ),(
R50332 T4452 T18709 arg1Of proteins,in
R79646 T33015 T18709 arg2Of samples,in
R31881 T33015 T53625 arg1Of samples,fecal
R81373 T81644 T22237 arg1Of presence,if
R98807 T7157 T22237 arg2Of bat,if
R81516 T7157 T47566 arg1Of bat,an
R84805 T7157 T64813 arg1Of bat,individual
R24256 T7157 T16625 arg1Of bat,being
R42875 T58244 T28791 arg1Of confirm,seropositive
R67857 T58244 T57534 arg1Of confirm,for
R74499 T8160 T57534 arg2Of SARS-CoV,for
R45292 T58244 T13336 arg1Of confirm,[
R3471 T37204 T13336 arg2Of 12,[
R27383 T59200 T13336 arg3Of ],[
R58960 T53492 T25066 arg1Of There,is
R27687 T81378 T25066 arg2Of degree,is
R58904 T81378 T54103 arg1Of degree,a
R98978 T81378 T67673 arg1Of degree,significant
R12027 T81378 T78835 arg1Of degree,of
R35363 T5389 T78835 arg2Of resemblance,of
R26377 T5389 T55726 arg1Of resemblance,of
R40584 T67121 T55726 arg2Of %,of
R47382 T67121 T9133 arg1Of %,greater
R47308 T9133 T51866 arg1Of greater,than
R38585 T67947 T51866 arg2Of 90,than
R98591 T25066 T42920 arg1Of is,in
R26290 T39927 T42920 arg2Of sequence,in
R33522 T39927 T98118 arg1Of sequence,the
R87768 T39927 T35947 arg1Of sequence,nucleotide
R91296 T39927 T7432 arg1Of sequence,of
R11170 T20946 T7432 arg2Of genomes,of
R26730 T20946 T69163 arg1Of genomes,the
R54869 T20946 T80745 arg1Of genomes,viral
R37496 T39927 T60639 arg1Of sequence,between
R41519 T45580 T60639 arg2Of and,between
R55856 T38342 T51508 arg1Of Rp3,SL-CoV
R71875 T38342 T27996 arg1Of Rp3,[
R41727 T68906 T27996 arg2Of 12,[
R25118 T31717 T27996 arg3Of ],[
R10272 T38342 T45580 arg1Of Rp3,and
R44862 T7628 T45580 arg2Of strain,and
R30046 T7628 T28138 arg1Of strain,the
R88472 T7628 T93675 arg1Of strain,Tor2
R99727 T7628 T18229 arg1Of strain,of
R5477 T32520 T18229 arg2Of –,of
R71375 T32520 T74591 arg1Of –,SARS-CoV
R57493 T7628 T53721 arg1Of strain,which
R7224 T7628 T18272 arg1Of strain,was
R40198 T81326 T18272 arg2Of isolated,was
R90058 T7628 T81326 arg2Of strain,isolated
R38579 T81326 T85814 arg1Of isolated,in
R59905 T8090 T85814 arg2Of Toronto,in
R32841 T8090 T96099 arg1Of Toronto,[
R83925 T48626 T96099 arg2Of 15,[
R28351 T63640 T96099 arg3Of ],[
R86154 T95952 T47685 arg1Of differences,The
R59901 T95952 T83153 arg1Of differences,in
R13170 T57783 T83153 arg2Of sequences,in
R31206 T57783 T89898 arg1Of sequences,the
R28343 T57783 T5455 arg1Of sequences,genome
R58032 T57783 T32904 arg1Of sequences,of
R22804 T64654 T32904 arg2Of SARS-CoV,of
R11953 T57783 T33080 arg1Of sequences,in
R85360 T91889 T33080 arg2Of species,in
R23015 T91889 T20399 arg1Of species,the
R17167 T91889 T6021 arg1Of species,two
R11084 T95952 T16420 arg1Of differences,occur
R30185 T16420 T17928 arg1Of occur,merely
R70591 T16420 T18957 arg1Of occur,in
R73328 T52934 T18957 arg2Of –,in
R7755 T52934 T30016 arg1Of –,the
R82456 T52934 T55882 arg1Of –,S
R92607 T52934 T98573 arg1Of –,gene
R57291 T52934 T45076 arg1Of –,which
R28962 T52934 T16269 arg1Of –,encodes
R53572 T90762 T16269 arg2Of domain,encodes
R53477 T90762 T35597 arg1Of domain,the
R21319 T90762 T87578 arg1Of domain,S1
R52481 T90762 T47778 arg1Of domain,of
R58901 T45316 T47778 arg2Of protein,of
R48472 T45316 T34405 arg1Of protein,the
R14799 T45316 T12863 arg1Of protein,coronavirus
R86586 T45316 T32427 arg1Of protein,spike
R42239 T16269 T15815 arg1Of encodes,and
R66376 T13365 T15815 arg2Of contains,and
R98214 T52934 T13365 arg1Of –,contains
R87600 T22966 T13365 arg2Of regions,contains
R65896 T22966 T35366 arg1Of regions,with
R57154 T52732 T35366 arg2Of rates,with
R88474 T52732 T87135 arg1Of rates,high
R2941 T52732 T71483 arg1Of rates,mutation
R74391 T52732 T42165 arg1Of rates,[
R3268 T12526 T42165 arg2Of 12,[
R81217 T31829 T42165 arg3Of ],[
R15441 T43996 T48594 arg1Of coronaviruses,The
R69640 T94005 T64690 arg1Of possess,commonly
R65914 T43996 T94005 arg1Of coronaviruses,possess
R90123 T31208 T94005 arg2Of and,possess
R70792 T8033 T52748 arg1Of frames,five
R14767 T8033 T25177 arg1Of frames,open
R65213 T8033 T13269 arg1Of frames,reading
R88451 T8033 T6150 arg1Of frames,(
R18185 T75001 T6150 arg2Of ORF,(
R77066 T23258 T6150 arg3Of ),(
R56978 T8033 T31588 arg1Of frames,that
R30550 T8033 T98349 arg1Of frames,correlate
R30372 T98349 T84544 arg1Of correlate,with
R28703 T28149 T84544 arg2Of ",",with
R77711 T28149 T88926 arg1Of ",",the
R14075 T71973 T7216 arg1Of production,of
R68163 T83272 T7216 arg2Of polyprotein,of
R87330 T83272 T15921 arg1Of polyprotein,the
R10873 T83272 T20599 arg1Of polyprotein,replicase
R63773 T83272 T61529 arg1Of polyprotein,(
R49475 T58827 T61529 arg2Of P,(
R32011 T90447 T61529 arg3Of ),(
R55450 T83272 T70573 arg1Of polyprotein,","
R19939 T58682 T70573 arg2Of spike,","
R57726 T58682 T42366 arg1Of spike,the
R81415 T58682 T13646 arg1Of spike,(
R67028 T70419 T13646 arg2Of S,(
R22891 T16399 T13646 arg3Of ),(
R7618 T71973 T28149 arg1Of production,","
R28844 T93891 T28149 arg2Of envelope,","
R38976 T93891 T12498 arg1Of envelope,(
R10580 T49731 T12498 arg2Of E,(
R68783 T56677 T12498 arg3Of ),(
R51174 T31208 T64104 arg1Of and,","
R37229 T8033 T31208 arg1Of frames,and
R42060 T95580 T31208 arg2Of and,and
R14672 T87007 T67550 arg1Of glycoproteins,membrane
R62325 T87007 T28810 arg1Of glycoproteins,(
R82170 T38106 T28810 arg2Of M,(
R6332 T30434 T28810 arg3Of ),(
R39650 T87007 T95580 arg1Of glycoproteins,and
R66652 T55062 T19426 arg3Of ),(
R86001 T40210 T87202 arg1Of strains,The
R96502 T40210 T16130 arg1Of strains,human
R65288 T40210 T9407 arg1Of strains,SARS-CoV
R43148 T40210 T28228 arg1Of strains,Tor2
R28796 T28228 T71564 arg1Of Tor2,and
R91863 T14942 T71564 arg2Of bat,and
R58409 T40210 T14942 arg1Of strains,bat
R74451 T40210 T87890 arg1Of strains,SL-CoV
R3058 T40210 T92515 arg1Of strains,Rp3
R96735 T40210 T99566 arg1Of strains,remain
R34689 T39551 T99566 arg2Of identical,remain
R88561 T64424 T25851 arg1Of %,more
R55663 T25851 T93008 arg1Of more,than
R28455 T9385 T93008 arg2Of 90,than
R17703 T39551 T64424 arg1Of identical,%
R45223 T40210 T39551 arg1Of strains,identical
R87952 T39551 T74931 arg1Of identical,at
R15458 T43323 T74931 arg2Of and,at
R92709 T54178 T24944 arg1Of proteins,the
R28920 T43323 T54178 arg1Of and,proteins
R86184 T40259 T38116 arg1Of P,","
R49439 T14257 T38116 arg2Of E,","
R20075 T38116 T31483 arg1Of ",",","
R6429 T90324 T31483 arg2Of M,","
R97074 T43323 T13349 arg1Of and,","
R74425 T31483 T43323 arg1Of ",",and
R37668 T37619 T43323 arg2Of N.,and
R50526 T21482 T58268 arg1Of S,the
R8023 T21482 T53333 arg1Of S,protein
R95633 T21482 T15154 arg1Of S,consists
R63361 T99566 T15154 arg2Of remain,consists
R86954 T15154 T15378 arg1Of consists,of
R60341 T39154 T15378 arg2Of domains,of
R99613 T39154 T8893 arg1Of domains,two
R31230 T39154 T80047 arg1Of domains,main
R59705 T15154 T63966 arg1Of consists,:
R88883 T34590 T14525 arg1Of and,1
R72465 T14525 T24485 arg1Of 1,)
R44663 T53057 T14573 arg1Of domain,the
R79868 T53057 T2720 arg1Of domain,S1
R16005 T53057 T52808 arg1Of domain,conveys
R78542 T99923 T52808 arg2Of role,conveys
R50015 T99923 T40693 arg1Of role,the
R10257 T99923 T37838 arg1Of role,of
R78547 T67511 T37838 arg2Of binding,of
R23527 T67511 T16526 arg1Of binding,receptor
R21561 T52808 T34590 arg1Of conveys,and
R39984 T56787 T34590 arg2Of assumes,and
R12695 T56787 T11269 arg1Of assumes,2
R13473 T11269 T5490 arg1Of 2,)
R60061 T79439 T64378 arg1Of domain,the
R25101 T79439 T5826 arg1Of domain,S2
R46737 T79439 T56787 arg1Of domain,assumes
R48455 T86961 T56787 arg2Of role,assumes
R37712 T86961 T43097 arg1Of role,the
R65917 T86961 T18963 arg1Of role,of
R69912 T77887 T18963 arg2Of fusion,of
R52486 T77887 T97770 arg1Of fusion,the
R82193 T77887 T55259 arg1Of fusion,of
R58046 T77390 T55259 arg2Of and,of
R25031 T85369 T77390 arg1Of viral,and
R98567 T74327 T77390 arg2Of membranes,and
R6769 T74327 T15313 arg1Of membranes,host-cell
R70941 T75489 T22912 arg1Of shows,In
R12304 T58392 T22912 arg2Of particular,In
R69868 T75489 T84749 arg1Of shows,","
R15307 T34731 T94019 arg1Of strain,the
R8771 T34731 T82008 arg1Of strain,human
R59200 T34731 T43891 arg1Of strain,SARS-CoV
R70624 T34731 T54296 arg1Of strain,Tor2
R41388 T34731 T75489 arg1Of strain,shows
R24559 T75815 T75489 arg2Of degree,shows
R31571 T75815 T56235 arg1Of degree,a
R39672 T75815 T89657 arg1Of degree,noticeable
R60526 T75815 T92988 arg1Of degree,of
R96985 T77130 T92988 arg2Of difference,of
R31050 T75815 T40843 arg1Of degree,in
R91771 T50007 T40843 arg2Of domain,in
R37356 T50007 T41545 arg1Of domain,the
R11328 T50007 T39219 arg1Of domain,S1
R99722 T75489 T5367 arg1Of shows,from
R30421 T88382 T5367 arg2Of strain,from
R11805 T88382 T8711 arg1Of strain,the
R62163 T88382 T66860 arg1Of strain,bat
R36619 T88382 T62453 arg1Of strain,SL-CoV
R87209 T88382 T71117 arg1Of strain,Rp3
R76244 T48832 T88085 arg1Of diversity,This
R58063 T48832 T76304 arg1Of diversity,would
R53923 T15359 T76304 arg2Of suffice,would
R77067 T48832 T15359 arg1Of diversity,suffice
R83702 T18888 T15359 arg2Of produce,suffice
R65549 T18888 T62259 arg1Of produce,to
R12434 T48832 T18888 arg1Of diversity,produce
R36890 T24144 T18888 arg2Of differences,produce
R93919 T24144 T72744 arg1Of differences,functional
R55612 T24144 T88673 arg1Of differences,between
R33869 T76844 T88673 arg2Of species,between
R84803 T76844 T38511 arg1Of species,the
R97873 T64840 T33948 arg1Of and,","
R54575 T15359 T64840 arg1Of suffice,and
R47614 T43993 T64840 arg2Of is,and
R51498 T48832 T43993 arg1Of diversity,is
R76165 T42902 T43993 arg2Of reason,is
R44752 T42902 T4517 arg1Of reason,an
R68071 T42902 T84855 arg1Of reason,apparent
R99391 T42902 T40921 arg1Of reason,why
R75140 T27008 T40921 arg2Of acted,why
R80634 T53907 T70648 arg1Of sera,bat
R18211 T53907 T57340 arg1Of sera,having
R14005 T54783 T57340 arg2Of levels,having
R53873 T54783 T85409 arg1Of levels,high
R89048 T54783 T45640 arg1Of levels,of
R48373 T52676 T45640 arg2Of antibodies,of
R98406 T52676 T58628 arg1Of antibodies,cross-reactive
R16698 T27008 T45941 arg1Of acted,not
R66698 T53907 T27008 arg1Of sera,acted
R94776 T27008 T78461 arg1Of acted,efficiently
R52117 T33747 T42258 arg1Of neutralize,to
R6095 T27008 T42258 modOf acted,to
R26977 T53907 T33747 arg1Of sera,neutralize
R17667 T77904 T33747 arg2Of SARS-CoV,neutralize

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T90 24-29 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T91 199-207 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T92 320-328 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T93 477-487 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T94 510-517 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T95 635-641 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 705-709 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T97 765-772 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 1006-1019 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T99 1045-1052 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 1143-1151 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T101 1172-1179 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T102 1336-1350 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T103 1336-1340 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 68-76 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 190-198 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 275-283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 390-398 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 565-573 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T79 655-663 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 1064-1072 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 1377-1385 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 1694-1702 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T104 0-19 Sentence denotes 4.1.2.2 Rationale:
T105 20-76 Sentence denotes Bat serum is not able to efficiently neutralize SARS-CoV
T106 77-213 Sentence denotes The range of bats, belonging to the genus Rhinolophus (horseshoe bats) and the family Rhinolophidae, produce the SARS-CoV antibody [12].
T107 214-404 Sentence denotes Polymerase chain reaction (PCR) will confirm the presence of SARS-CoV nucleocapsid (N) and polymerase (P) proteins in fecal samples if an individual bat being seropositive for SARS-CoV [12].
T108 405-611 Sentence denotes There is a significant degree of resemblance of greater than 90% in the nucleotide sequence of the viral genomes between SL-CoV Rp3 [12] and the Tor2 strain of SARS-CoV – which was isolated in Toronto [15].
T109 612-824 Sentence denotes The differences in the genome sequences of SARS-CoV in the two species occur merely in the S gene – which encodes the S1 domain of the coronavirus spike protein and contains regions with high mutation rates [12].
T110 825-1053 Sentence denotes The coronaviruses commonly possess five open reading frames (ORF) that correlate with the production of the replicase polyprotein (P), the spike (S), envelope (E), and membrane (M) glycoproteins and the nucleocapsid (N) protein.
T111 1054-1211 Sentence denotes The human SARS-CoV Tor2 and bat SL-CoV Rp3 strains remain more than 90% identical at the proteins P, E, M, and N. the protein S consists of two main domains:
T112 1212-1351 Sentence denotes 1) the S1 domain conveys the role of receptor binding and 2) the S2 domain assumes the role of the fusion of viral and host-cell membranes.
T113 1352-1486 Sentence denotes In particular, the human SARS-CoV Tor2 strain shows a noticeable degree of difference in the S1 domain from the bat SL-CoV Rp3 strain.
T114 1487-1703 Sentence denotes This diversity would suffice to produce functional differences between the species, and is an apparent reason why bat sera having high levels of cross-reactive antibodies not acted efficiently to neutralize SARS-CoV.

2_test

Id Subject Object Predicate Lexical cue
32413736-16195424-48112971 209-211 16195424 denotes 12
32413736-16195424-48112972 400-402 16195424 denotes 12
32413736-16195424-48112973 538-540 16195424 denotes 12
32413736-12730501-48112974 607-609 12730501 denotes 15
32413736-16195424-48112975 820-822 16195424 denotes 12
T62085 209-211 16195424 denotes 12
T33865 400-402 16195424 denotes 12
T81204 538-540 16195424 denotes 12
T68046 607-609 12730501 denotes 15
T5396 820-822 16195424 denotes 12