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PMC:7205724 / 12185-12362 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
383 94-95 Gene denotes S Gene:43740568
384 19-20 Gene denotes S Gene:43740568
393 36-45 Species denotes 2019-nCoV Tax:2697049
394 121-125 Species denotes CoVs Tax:11118
395 135-144 Species denotes SARSr-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T88 21-28 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 96-103 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T75 111-115 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T132 46-49 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 50-51 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 107-110 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T124 21-28 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T125 96-103 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T85 21-28 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86 96-103 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T95 36-45 Species denotes 2019-nCoV NCBItxid:2697049
T96 107-125 Species denotes bat SARS-like CoVs NCBItxid:1508227
T97 135-144 Species denotes SARSr-CoV NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T102 0-177 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
384 19-20 Gene denotes S Gene:43740568
393 36-45 Species denotes 2019-nCoV Tax:2697049
383 94-95 Gene denotes S Gene:43740568
394 121-125 Species denotes CoVs Tax:11118
395 135-144 Species denotes SARSr-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1233 19-28 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1266 94-103 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T32040 0-2 IN denotes In
T92103 3-13 JJ denotes particular
T46259 13-14 -COMMA- denotes ,
T37699 15-18 DT denotes the
T72545 19-20 NN denotes S
T24131 21-28 NN denotes protein
T44437 29-31 IN denotes of
T20264 32-35 DT denotes the
T45006 36-45 NN denotes 2019-nCoV
T85613 46-49 VBZ denotes has
T77820 50-51 DT denotes a
T51362 52-56 JJ denotes high
T86629 57-65 NN denotes sequence
T85333 66-74 NN denotes identity
T4126 75-77 IN denotes of
T23106 78-83 CD denotes 80–98
T47986 83-84 NN denotes %
T62529 85-89 IN denotes with
T47180 90-93 DT denotes the
T64906 94-95 NN denotes S
T55893 96-103 NN denotes protein
T84276 104-106 IN denotes of
T27337 107-110 NN denotes bat
T65227 111-120 JJ denotes SARS-like
T48841 121-125 NNS denotes CoVs
T43941 125-126 -COMMA- denotes ,
T76487 127-131 JJ denotes such
T69082 132-134 IN denotes as
T24341 135-144 JJ denotes SARSr-CoV
T77949 145-150 NN denotes ZXC21
T33016 151-152 NNP denotes S
T45981 152-153 -COMMA- denotes ,
T58714 154-158 NNP denotes ZC45
T47242 159-160 NNP denotes S
T24128 160-161 -COMMA- denotes ,
T33217 162-165 CC denotes and
T49688 166-172 NN denotes RaTG13
T48117 173-174 -LRB- denotes [
T8349 174-175 CD denotes 3
T82587 175-176 -RRB- denotes ]
R9633 T55893 T62529 arg2Of protein,with
R8236 T55893 T47180 arg1Of protein,the
R37164 T55893 T64906 arg1Of protein,S
R27603 T55893 T84276 arg1Of protein,of
R84379 T48841 T84276 arg2Of CoVs,of
R59931 T48841 T27337 arg1Of CoVs,bat
R85967 T48841 T65227 arg1Of CoVs,SARS-like
R99461 T48841 T43941 arg1Of CoVs,","
R20816 T69082 T76487 arg1Of as,such
R77868 T48841 T69082 arg1Of CoVs,as
R60898 T85613 T32040 arg1Of has,In
R8931 T92103 T32040 arg2Of particular,In
R37482 T85613 T46259 arg1Of has,","
R69236 T24131 T37699 arg1Of protein,the
R90434 T24131 T72545 arg1Of protein,S
R42614 T24131 T44437 arg1Of protein,of
R23596 T45006 T44437 arg2Of 2019-nCoV,of
R11370 T45006 T20264 arg1Of 2019-nCoV,the
R80817 T24131 T85613 arg1Of protein,has
R49961 T85333 T85613 arg2Of identity,has
R54652 T85333 T77820 arg1Of identity,a
R29265 T85333 T51362 arg1Of identity,high
R4874 T85333 T86629 arg1Of identity,sequence
R2751 T85333 T4126 arg1Of identity,of
R99494 T47986 T4126 arg2Of %,of
R81734 T47986 T23106 arg1Of %,80–98
R65938 T85613 T62529 arg1Of has,with
R59047 T33217 T69082 arg2Of and,as
R62932 T33016 T24341 arg1Of S,SARSr-CoV
R11481 T33016 T77949 arg1Of S,ZXC21
R38926 T33016 T45981 arg1Of S,","
R47300 T47242 T45981 arg2Of S,","
R77326 T47242 T58714 arg1Of S,ZC45
R75080 T33217 T24128 arg1Of and,","
R91783 T45981 T33217 arg1Of ",",and
R80254 T49688 T33217 arg2Of RaTG13,and
R54614 T49688 T48117 arg1Of RaTG13,[
R65396 T8349 T48117 arg2Of 3,[
R80187 T82587 T48117 arg3Of ],[

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T88 21-28 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 96-103 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T72 111-115 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T102 0-177 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].