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PMC:7205724 / 11673-12516 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
380 41-44 Gene denotes Rp3 Gene:22924
381 235-238 Gene denotes Rp3 Gene:22924
382 247-250 Gene denotes Rp3 Gene:22924
383 606-607 Gene denotes S Gene:43740568
384 531-532 Gene denotes S Gene:43740568
385 73-86 Species denotes coronaviruses Tax:11118
386 145-153 Species denotes SARS-CoV Tax:694009
387 205-226 Species denotes SARS-like coronavirus Tax:694009
388 243-246 Species denotes CoV Tax:11118
389 303-310 Species denotes patient Tax:9606
390 335-344 Species denotes 2019-nCoV Tax:2697049
391 417-434 Species denotes novel coronavirus Tax:2697049
392 442-463 Species denotes SARS-like coronavirus Tax:694009
393 548-557 Species denotes 2019-nCoV Tax:2697049
394 633-637 Species denotes CoVs Tax:11118
395 647-656 Species denotes SARSr-CoV Tax:694009
396 740-749 Species denotes 2019-nCoV Tax:2697049
397 796-804 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T85 0-6 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 346-349 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 398-409 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 533-540 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 608-615 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 145-153 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 205-209 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 316-320 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 442-446 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 623-627 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 796-804 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T128 21-22 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 29-32 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T130 301-302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 495-499 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T132 558-561 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T133 562-563 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 619-622 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T135 838-842 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T122 240-242 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T123 398-409 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T124 533-540 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T125 608-615 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T8 262-284 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes bronchoalveolar lavage http://purl.bioontology.org/ontology/MEDDRA/10049413

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T83 346-349 Chemical denotes RNA http://purl.obolibrary.org/obo/CHEBI_33697
T84 398-409 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T85 533-540 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86 608-615 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T88 29-32 Species denotes bat NCBItxid:9397
T89 145-153 Species denotes SARS-CoV NCBItxid:694009
T90 205-226 Species denotes SARS-like coronavirus NCBItxid:694009
T91 316-320 Species denotes SARS NCBItxid:694009
T92 335-344 Species denotes 2019-nCoV NCBItxid:2697049
T93 442-463 Species denotes SARS-like coronavirus NCBItxid:694009
T94 495-499 Species denotes bats NCBItxid:9397
T95 548-557 Species denotes 2019-nCoV NCBItxid:2697049
T96 619-637 Species denotes bat SARS-like CoVs NCBItxid:1508227
T97 647-656 Species denotes SARSr-CoV NCBItxid:694009
T98 740-749 Species denotes 2019-nCoV NCBItxid:2697049
T99 796-804 Species denotes SARS-CoV NCBItxid:694009
T100 838-842 Species denotes bats NCBItxid:9397

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T98 0-176 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 177-257 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 258-345 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 346-511 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 512-689 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 690-843 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
380 41-44 Gene denotes Rp3 Gene:22924
385 73-86 Species denotes coronaviruses Tax:11118
386 145-153 Species denotes SARS-CoV Tax:694009
387 205-226 Species denotes SARS-like coronavirus Tax:694009
381 235-238 Gene denotes Rp3 Gene:22924
388 243-246 Species denotes CoV Tax:11118
382 247-250 Gene denotes Rp3 Gene:22924
389 303-310 Species denotes patient Tax:9606
390 335-344 Species denotes 2019-nCoV Tax:2697049
391 417-434 Species denotes novel coronavirus Tax:2697049
392 442-463 Species denotes SARS-like coronavirus Tax:694009
384 531-532 Gene denotes S Gene:43740568
393 548-557 Species denotes 2019-nCoV Tax:2697049
383 606-607 Gene denotes S Gene:43740568
394 633-637 Species denotes CoVs Tax:11118
395 647-656 Species denotes SARSr-CoV Tax:694009
396 740-749 Species denotes 2019-nCoV Tax:2697049
397 796-804 Species denotes SARS-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1233 531-540 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1266 606-615 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T28843 0-6 NN denotes Genome
T46450 7-17 NN denotes sequencing
T27748 18-20 IN denotes of
T27295 21-22 DT denotes a
T62671 23-28 JJ denotes fecal
T93555 29-32 NN denotes bat
T52375 33-39 NN denotes sample
T30106 39-40 -COMMA- denotes ,
T79240 41-44 NN denotes Rp3
T51658 44-45 -COMMA- denotes ,
T48337 46-51 MD denotes could
T23533 52-58 VB denotes detect
T45372 59-61 DT denotes an
T48569 62-69 NN denotes isolate
T20680 70-72 IN denotes of
T19302 73-86 NNS denotes coronaviruses
T18234 86-87 -COMMA- denotes ,
T77212 88-93 WDT denotes which
T37427 94-97 VBD denotes was
T90838 98-104 RB denotes almost
T69281 105-114 JJ denotes identical
T30703 115-117 TO denotes to
T45933 118-121 DT denotes the
T53102 122-131 JJ denotes causative
T21161 132-137 NN denotes agent
T31651 138-140 IN denotes of
T24092 141-144 DT denotes the
T76932 145-153 JJ denotes SARS-CoV
T42133 154-162 NN denotes outbreak
T26029 163-165 IN denotes of
T7676 166-175 CD denotes 2002–2003
T55417 177-182 RB denotes Hence
T40490 182-183 -COMMA- denotes ,
T99577 184-186 PRP denotes it
T85900 187-195 VBD denotes attained
T84303 196-199 DT denotes the
T99794 200-204 NN denotes name
T28667 205-214 JJ denotes SARS-like
T13194 215-226 NN denotes coronavirus
T40481 227-234 NN denotes isolate
T51053 235-238 NN denotes Rp3
T84085 239-240 -LRB- denotes (
T37600 240-246 NN denotes SL-CoV
T96263 247-250 NN denotes Rp3
T15140 250-251 -RRB- denotes )
T87895 252-253 -LRB- denotes [
T40198 253-255 CD denotes 12
T79787 255-256 -RRB- denotes ]
T87849 258-261 DT denotes The
T82417 262-277 JJ denotes bronchoalveolar
T31054 278-284 NN denotes lavage
T37752 285-290 NN denotes fluid
T74238 291-292 -LRB- denotes (
T3228 292-296 NN denotes BALF
T70930 296-297 -RRB- denotes )
T9092 298-300 IN denotes of
T49696 301-302 DT denotes a
T42278 303-310 NN denotes patient
T77065 311-315 IN denotes with
T56445 316-320 NNS denotes SARS
T91231 321-330 VBD denotes contained
T55260 331-334 DT denotes the
T14876 335-344 NN denotes 2019-nCoV
T41253 346-349 NN denotes RNA
T76927 350-360 NN denotes sequencing
T21523 361-366 MD denotes could
T61033 367-373 VB denotes reveal
T57735 374-379 RB denotes about
T17027 380-382 CD denotes 90
T88762 382-383 NN denotes %
T56862 384-394 NN denotes similarity
T58084 395-397 IN denotes in
T42893 398-409 NNS denotes nucleotides
T28737 410-412 IN denotes of
T98581 413-416 DT denotes the
T54378 417-422 JJ denotes novel
T41408 423-434 NN denotes coronavirus
T8820 435-438 CC denotes and
T82233 439-441 IN denotes of
T87395 442-451 JJ denotes SARS-like
T25315 452-463 NN denotes coronavirus
T40001 464-468 WDT denotes that
T50563 469-472 VBD denotes had
T73327 473-483 RB denotes previously
T43308 484-491 VBN denotes related
T87528 492-494 TO denotes to
T18784 495-499 NNS denotes bats
T21998 500-501 -LRB- denotes [
T45109 501-503 CD denotes 13
T62980 503-504 -RRB- denotes ]
T34259 504-505 -COMMA- denotes ,
T56176 506-507 -LRB- denotes [
T43975 507-509 CD denotes 14
T89437 509-510 -RRB- denotes ]
T32040 512-514 IN denotes In
T92103 515-525 JJ denotes particular
T46259 525-526 -COMMA- denotes ,
T37699 527-530 DT denotes the
T72545 531-532 NN denotes S
T24131 533-540 NN denotes protein
T44437 541-543 IN denotes of
T20264 544-547 DT denotes the
T45006 548-557 NN denotes 2019-nCoV
T85613 558-561 VBZ denotes has
T77820 562-563 DT denotes a
T51362 564-568 JJ denotes high
T86629 569-577 NN denotes sequence
T85333 578-586 NN denotes identity
T4126 587-589 IN denotes of
T23106 590-595 CD denotes 80–98
T47986 595-596 NN denotes %
T62529 597-601 IN denotes with
T47180 602-605 DT denotes the
T64906 606-607 NN denotes S
T55893 608-615 NN denotes protein
T84276 616-618 IN denotes of
T27337 619-622 NN denotes bat
T65227 623-632 JJ denotes SARS-like
T48841 633-637 NNS denotes CoVs
T43941 637-638 -COMMA- denotes ,
T76487 639-643 JJ denotes such
T69082 644-646 IN denotes as
T24341 647-656 JJ denotes SARSr-CoV
T77949 657-662 NN denotes ZXC21
T33016 663-664 NNP denotes S
T45981 664-665 -COMMA- denotes ,
T58714 666-670 NNP denotes ZC45
T47242 671-672 NNP denotes S
T24128 672-673 -COMMA- denotes ,
T33217 674-677 CC denotes and
T49688 678-684 NN denotes RaTG13
T48117 685-686 -LRB- denotes [
T8349 686-687 CD denotes 3
T82587 687-688 -RRB- denotes ]
T26826 690-698 RB denotes Moreover
T40424 698-699 -COMMA- denotes ,
T82603 700-702 IN denotes in
T83961 703-715 JJ denotes phylogenomic
T26439 716-721 NNS denotes trees
T36143 721-722 -COMMA- denotes ,
T1931 723-731 NNS denotes branches
T94548 732-735 IN denotes for
T9564 736-739 DT denotes the
T82190 740-749 NN denotes 2019-nCoV
T51998 750-753 VBP denotes are
T48884 754-756 IN denotes of
T84416 757-764 JJR denotes greater
T46091 765-771 NN denotes length
T44026 772-776 IN denotes than
T19745 777-782 DT denotes those
T66697 783-786 IN denotes for
T66659 787-790 DT denotes the
T22981 791-795 CD denotes 2003
T47496 796-804 NN denotes SARS-CoV
T18117 804-805 -COMMA- denotes ,
T90160 806-809 CC denotes and
T86256 810-819 RB denotes therefore
T89702 820-824 RBR denotes more
T19375 825-834 JJ denotes favorable
T58982 835-837 TO denotes to
T17546 838-842 NNS denotes bats
R93896 T37752 T9092 arg1Of fluid,of
R25292 T42278 T9092 arg2Of patient,of
R26327 T42278 T49696 arg1Of patient,a
R92357 T42278 T77065 arg1Of patient,with
R79425 T56445 T77065 arg2Of SARS,with
R79797 T37752 T91231 arg1Of fluid,contained
R33601 T14876 T91231 arg2Of 2019-nCoV,contained
R47706 T14876 T55260 arg1Of 2019-nCoV,the
R82198 T76927 T41253 arg1Of sequencing,RNA
R9633 T55893 T62529 arg2Of protein,with
R8236 T55893 T47180 arg1Of protein,the
R37164 T55893 T64906 arg1Of protein,S
R27603 T55893 T84276 arg1Of protein,of
R84379 T48841 T84276 arg2Of CoVs,of
R59931 T48841 T27337 arg1Of CoVs,bat
R85967 T48841 T65227 arg1Of CoVs,SARS-like
R99461 T48841 T43941 arg1Of CoVs,","
R20816 T69082 T76487 arg1Of as,such
R77868 T48841 T69082 arg1Of CoVs,as
R14066 T46450 T28843 arg1Of sequencing,Genome
R80891 T46450 T27748 arg1Of sequencing,of
R29083 T52375 T27748 arg2Of sample,of
R55505 T52375 T27295 arg1Of sample,a
R70294 T52375 T62671 arg1Of sample,fecal
R95907 T52375 T93555 arg1Of sample,bat
R77496 T52375 T30106 arg1Of sample,","
R70744 T79240 T30106 arg2Of Rp3,","
R84750 T23533 T51658 arg1Of detect,","
R22256 T46450 T48337 arg1Of sequencing,could
R84362 T23533 T48337 arg2Of detect,could
R13690 T46450 T23533 arg1Of sequencing,detect
R81506 T48569 T23533 arg2Of isolate,detect
R60741 T48569 T45372 arg1Of isolate,an
R29203 T48569 T20680 arg1Of isolate,of
R55007 T19302 T20680 arg2Of coronaviruses,of
R77595 T48569 T18234 arg1Of isolate,","
R74345 T48569 T77212 arg1Of isolate,which
R82277 T48569 T37427 arg1Of isolate,was
R49235 T69281 T37427 arg2Of identical,was
R15724 T69281 T90838 arg1Of identical,almost
R26850 T48569 T69281 arg1Of isolate,identical
R99770 T69281 T30703 arg1Of identical,to
R99853 T21161 T30703 arg2Of agent,to
R34313 T21161 T45933 arg1Of agent,the
R90071 T21161 T53102 arg1Of agent,causative
R83498 T21161 T31651 arg1Of agent,of
R46891 T42133 T31651 arg2Of outbreak,of
R27084 T42133 T24092 arg1Of outbreak,the
R95994 T42133 T76932 arg1Of outbreak,SARS-CoV
R47434 T42133 T26029 arg1Of outbreak,of
R97280 T7676 T26029 arg2Of 2002–2003,of
R11853 T85900 T55417 arg1Of attained,Hence
R54546 T85900 T40490 arg1Of attained,","
R36475 T99577 T85900 arg1Of it,attained
R69085 T51053 T85900 arg2Of Rp3,attained
R2126 T51053 T84303 arg1Of Rp3,the
R94363 T51053 T99794 arg1Of Rp3,name
R84505 T51053 T28667 arg1Of Rp3,SARS-like
R51413 T51053 T13194 arg1Of Rp3,coronavirus
R38349 T51053 T40481 arg1Of Rp3,isolate
R28069 T51053 T84085 arg1Of Rp3,(
R49507 T96263 T84085 arg2Of Rp3,(
R98383 T15140 T84085 arg3Of ),(
R43398 T96263 T37600 arg1Of Rp3,SL-CoV
R58949 T85900 T87895 arg1Of attained,[
R31914 T40198 T87895 arg2Of 12,[
R93865 T79787 T87895 arg3Of ],[
R4610 T37752 T87849 arg1Of fluid,The
R17928 T37752 T82417 arg1Of fluid,bronchoalveolar
R63818 T37752 T31054 arg1Of fluid,lavage
R54661 T37752 T74238 arg1Of fluid,(
R50117 T3228 T74238 arg2Of BALF,(
R11221 T70930 T74238 arg3Of ),(
R27740 T76927 T21523 arg1Of sequencing,could
R2092 T61033 T21523 arg2Of reveal,could
R5221 T76927 T61033 arg1Of sequencing,reveal
R54859 T56862 T61033 arg2Of similarity,reveal
R81820 T17027 T57735 arg1Of 90,about
R26135 T56862 T17027 arg1Of similarity,90
R37944 T17027 T88762 arg1Of 90,%
R19722 T56862 T58084 arg1Of similarity,in
R26450 T42893 T58084 arg2Of nucleotides,in
R85800 T42893 T28737 arg1Of nucleotides,of
R6863 T41408 T28737 arg2Of coronavirus,of
R72528 T41408 T98581 arg1Of coronavirus,the
R98967 T41408 T54378 arg1Of coronavirus,novel
R17590 T58084 T8820 arg1Of in,and
R49869 T82233 T8820 arg2Of of,and
R76106 T56862 T82233 arg1Of similarity,of
R40705 T25315 T82233 arg2Of coronavirus,of
R21771 T25315 T87395 arg1Of coronavirus,SARS-like
R89495 T25315 T40001 arg1Of coronavirus,that
R12805 T25315 T50563 arg1Of coronavirus,had
R43366 T43308 T50563 arg2Of related,had
R19626 T43308 T73327 arg1Of related,previously
R71640 T25315 T43308 arg1Of coronavirus,related
R98847 T43308 T87528 arg1Of related,to
R56090 T18784 T87528 arg2Of bats,to
R53709 T18784 T21998 arg1Of bats,[
R55235 T45109 T21998 arg2Of 13,[
R4872 T62980 T21998 arg3Of ],[
R85928 T43308 T34259 arg1Of related,","
R66763 T43308 T56176 arg1Of related,[
R82331 T43975 T56176 arg2Of 14,[
R65672 T89437 T56176 arg3Of ],[
R60898 T85613 T32040 arg1Of has,In
R8931 T92103 T32040 arg2Of particular,In
R37482 T85613 T46259 arg1Of has,","
R69236 T24131 T37699 arg1Of protein,the
R90434 T24131 T72545 arg1Of protein,S
R42614 T24131 T44437 arg1Of protein,of
R23596 T45006 T44437 arg2Of 2019-nCoV,of
R11370 T45006 T20264 arg1Of 2019-nCoV,the
R80817 T24131 T85613 arg1Of protein,has
R49961 T85333 T85613 arg2Of identity,has
R54652 T85333 T77820 arg1Of identity,a
R29265 T85333 T51362 arg1Of identity,high
R4874 T85333 T86629 arg1Of identity,sequence
R2751 T85333 T4126 arg1Of identity,of
R99494 T47986 T4126 arg2Of %,of
R81734 T47986 T23106 arg1Of %,80–98
R65938 T85613 T62529 arg1Of has,with
R59047 T33217 T69082 arg2Of and,as
R62932 T33016 T24341 arg1Of S,SARSr-CoV
R11481 T33016 T77949 arg1Of S,ZXC21
R38926 T33016 T45981 arg1Of S,","
R47300 T47242 T45981 arg2Of S,","
R77326 T47242 T58714 arg1Of S,ZC45
R75080 T33217 T24128 arg1Of and,","
R91783 T45981 T33217 arg1Of ",",and
R80254 T49688 T33217 arg2Of RaTG13,and
R54614 T49688 T48117 arg1Of RaTG13,[
R65396 T8349 T48117 arg2Of 3,[
R80187 T82587 T48117 arg3Of ],[
R79793 T51998 T26826 arg1Of are,Moreover
R43834 T51998 T40424 arg1Of are,","
R27649 T51998 T82603 arg1Of are,in
R96220 T26439 T82603 arg2Of trees,in
R84762 T26439 T83961 arg1Of trees,phylogenomic
R83564 T51998 T36143 arg1Of are,","
R35953 T1931 T94548 arg1Of branches,for
R50313 T82190 T94548 arg2Of 2019-nCoV,for
R39618 T82190 T9564 arg1Of 2019-nCoV,the
R26497 T1931 T51998 arg1Of branches,are
R13764 T19375 T51998 arg2Of favorable,are
R81075 T51998 T48884 arg1Of are,of
R51585 T46091 T48884 arg2Of length,of
R73778 T46091 T84416 arg1Of length,greater
R53908 T51998 T44026 arg1Of are,than
R52362 T19745 T44026 arg2Of those,than
R18993 T19745 T66697 arg1Of those,for
R89736 T47496 T66697 arg2Of SARS-CoV,for
R79769 T47496 T66659 arg1Of SARS-CoV,the
R19666 T47496 T22981 arg1Of SARS-CoV,2003
R93374 T51998 T18117 arg1Of are,","
R50127 T86256 T90160 arg1Of therefore,and
R3485 T19375 T86256 arg1Of favorable,therefore
R2351 T19375 T89702 arg1Of favorable,more
R91193 T1931 T19375 arg1Of branches,favorable
R80199 T19375 T58982 arg1Of favorable,to
R45246 T17546 T58982 arg2Of bats,to

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T85 0-6 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T86 346-349 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 398-409 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T88 533-540 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 608-615 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T68 145-153 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 205-209 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T70 316-320 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 442-446 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 623-627 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 796-804 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T98 0-176 Sentence denotes Genome sequencing of a fecal bat sample, Rp3, could detect an isolate of coronaviruses, which was almost identical to the causative agent of the SARS-CoV outbreak of 2002–2003.
T99 177-257 Sentence denotes Hence, it attained the name SARS-like coronavirus isolate Rp3 (SL-CoV Rp3) [12].
T100 258-345 Sentence denotes The bronchoalveolar lavage fluid (BALF) of a patient with SARS contained the 2019-nCoV.
T101 346-511 Sentence denotes RNA sequencing could reveal about 90% similarity in nucleotides of the novel coronavirus and of SARS-like coronavirus that had previously related to bats [13], [14].
T102 512-689 Sentence denotes In particular, the S protein of the 2019-nCoV has a high sequence identity of 80–98% with the S protein of bat SARS-like CoVs, such as SARSr-CoV ZXC21 S, ZC45 S, and RaTG13 [3].
T103 690-843 Sentence denotes Moreover, in phylogenomic trees, branches for the 2019-nCoV are of greater length than those for the 2003 SARS-CoV, and therefore more favorable to bats.

2_test

Id Subject Object Predicate Lexical cue
32413736-16195424-48112970 253-255 16195424 denotes 12
T82223 253-255 16195424 denotes 12