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PMC:7201239 / 8692-9707 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
376 317-327 Gene denotes Collectrin Gene:57393
377 651-660 Chemical denotes histidine MESH:D006639
378 800-809 Chemical denotes histidine MESH:D006639
379 822-835 Chemical denotes glutamic acid MESH:D018698
380 899-908 Chemical denotes histidine MESH:D006639
381 996-997 Chemical denotes N MESH:D009584

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T62 11-21 Body_part denotes chromosome http://purl.org/sig/ont/fma/fma67093
T63 63-75 Body_part denotes cell-surface http://purl.org/sig/ont/fma/fma67653
T64 63-67 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T65 76-88 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T66 123-134 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T67 190-200 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T68 350-360 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T69 375-382 Body_part denotes insulin http://purl.org/sig/ont/fma/fma83365
T70 459-463 Body_part denotes Neck http://purl.org/sig/ont/fma/fma7155
T71 538-543 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T72 557-567 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T73 620-630 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T74 651-660 Body_part denotes histidine http://purl.org/sig/ont/fma/fma82755
T75 800-809 Body_part denotes histidine http://purl.org/sig/ont/fma/fma82755
T76 822-835 Body_part denotes glutamic acid http://purl.org/sig/ont/fma/fma82762
T77 875-886 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T78 899-908 Body_part denotes histidine http://purl.org/sig/ont/fma/fma82755

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T28 459-463 Body_part denotes Neck http://purl.obolibrary.org/obo/UBERON_0000974
T29 538-543 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T86 397-400 Disease denotes CLD http://purl.obolibrary.org/obo/MONDO_0008964

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T153 54-55 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T154 63-67 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T155 156-157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T156 169-175 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T157 176-183 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T158 190-209 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T159 190-209 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T160 211-212 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 304-305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 329-330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 375-382 http://purl.obolibrary.org/obo/PR_000009054 denotes insulin
T164 435-436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T165 459-463 http://www.ebi.ac.uk/efo/EFO_0000967 denotes Neck
T166 554-556 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T167 557-576 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T168 557-576 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T169 620-639 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T170 620-639 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T171 713-714 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T172 891-892 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T27 76-88 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T28 123-134 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T29 123-128 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T30 129-134 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T31 176-183 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T32 190-200 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T33 190-195 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T34 196-200 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T35 231-233 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T36 268-272 Chemical denotes zinc http://purl.obolibrary.org/obo/CHEBI_27363|http://purl.obolibrary.org/obo/CHEBI_30185
T38 350-360 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T39 350-355 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T40 356-360 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T41 375-382 Chemical denotes insulin http://purl.obolibrary.org/obo/CHEBI_145810
T42 437-447 Chemical denotes ferredoxin http://purl.obolibrary.org/obo/CHEBI_5017
T43 557-567 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T44 557-562 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T45 563-567 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T46 620-630 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T47 620-625 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T48 626-630 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T49 651-660 Chemical denotes histidine http://purl.obolibrary.org/obo/CHEBI_27570
T50 731-735 Chemical denotes zinc http://purl.obolibrary.org/obo/CHEBI_27363|http://purl.obolibrary.org/obo/CHEBI_30185
T52 800-809 Chemical denotes histidine http://purl.obolibrary.org/obo/CHEBI_27570
T53 822-835 Chemical denotes glutamic acid http://purl.obolibrary.org/obo/CHEBI_16015|http://purl.obolibrary.org/obo/CHEBI_18237
T55 831-835 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T56 875-886 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T57 875-880 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T58 881-886 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T59 899-908 Chemical denotes histidine http://purl.obolibrary.org/obo/CHEBI_27570

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 350-370 http://purl.obolibrary.org/obo/GO_0006865 denotes amino acid transport
T5 361-370 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T6 996-1012 http://purl.obolibrary.org/obo/GO_0006487 denotes N-glycosylations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T32 0-1015 Sentence denotes It maps to chromosome X at position Xp22.8 It encodes a type I cell-surface glycoprotein of about 100 kDa, composed by 805 amino acids and characterized by a N-terminal signal peptide of 17 amino acid residues, a peptidase domain (PD) (residues 19–615) with its HEXXH zinc binding metalloprotease motif, a C-terminal Collectrin (a regulator of renal amino acid transport and insulin)-like domain (CLD) (residues 616–768) that includes a ferredoxin-like fold “Neck” domain (615–726), that end with an hydrophobic transmembrane hydrophobic helix region of 22 amino acid residues followed by an intracellular segment of 43 amino acid residues.7 , 42 The histidine motif HEXXH identified as an important component in a wide variety of zinc-dependent metalloproteases consists of five residues, the first histidine followed by glutamic acid being conserved, then the two variable amino acids and a final histidine.43 Crystal structure analysis have suggested the presence of several hinge regions and N-glycosylations.44

2_test

Id Subject Object Predicate Lexical cue
32414646-10924499-62239781 41-42 10924499 denotes 8
32414646-10969042-62239782 640-641 10969042 denotes 7
32414646-11278314-62239783 644-646 11278314 denotes 42
32414646-2914602-62239784 909-911 2914602 denotes 43