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PMC:7201239 / 3786-5269 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
199 22-44 Species denotes human coronavirus 229E Tax:11137
200 46-55 Species denotes HCoV-229E Tax:11137
201 80-89 Species denotes HCoV-OC43 Tax:31631
202 91-106 Species denotes Betacoronavirus Tax:694002
203 250-263 Species denotes coronaviruses Tax:11118
204 318-327 Species denotes HCoV-NL63 Tax:277944
205 351-360 Species denotes HCoV-HKU1 Tax:290028
206 362-377 Species denotes Betacoronavirus Tax:694002
207 495-501 Species denotes people Tax:9606
208 807-815 Species denotes patients Tax:9606
209 851-860 Species denotes HCoV-229E Tax:11137
210 873-882 Species denotes HCoV-HKU1 Tax:290028
211 895-904 Species denotes HCoV-NL63 Tax:277944
212 922-931 Species denotes HCoV-OC43 Tax:31631
213 996-1001 Species denotes child Tax:9606
214 1039-1048 Species denotes HCoV-229E Tax:11137
215 1062-1071 Species denotes HCoV-NL63 Tax:277944
216 1089-1098 Species denotes HCoV-OC43 Tax:31631
217 1189-1197 Species denotes patients Tax:9606
218 1251-1260 Species denotes HCoV-229E Tax:11137
219 1279-1288 Species denotes HCoV-HKU1 Tax:290028
220 1308-1317 Species denotes HCoV-NL63 Tax:277944
221 1341-1350 Species denotes HCoV-OC43 Tax:31631
222 1412-1425 Species denotes coronaviruses Tax:11118
223 168-190 Disease denotes respiratory infections MESH:D012141
224 485-491 Disease denotes deaths MESH:D003643
225 507-514 Disease denotes fragile MESH:D005600
226 631-651 Disease denotes respiratory symptoms MESH:D012818
227 821-840 Disease denotes respiratory disease MESH:D012140
228 1019-1028 Disease denotes pneumonia MESH:D011014
229 1209-1237 Disease denotes respiratory tract infections MESH:D012141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 1154-1160 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T23 1209-1226 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T16 721-726 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T17 1154-1160 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T18 1209-1226 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T48 168-190 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T49 821-840 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T50 1019-1028 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T51 1209-1237 Disease denotes respiratory tract infections http://purl.obolibrary.org/obo/MONDO_0024355

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 22-27 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T75 115-116 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 386-387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 451-458 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T78 523-524 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T79 661-667 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T80 713-714 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 848-850 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T82 940-942 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T83 943-944 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T84 1035-1038 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T85 1058-1061 http://purl.obolibrary.org/obo/CLO_0001003 denotes 163
T86 1247-1250 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 168-190 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T7 1019-1028 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 1203-1237 Phenotype denotes acute respiratory tract infections http://purl.obolibrary.org/obo/HP_0011948

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-219 Sentence denotes Before 2003, although human coronavirus 229E (HCoV-229E) (Alphacoronavirus) and HCoV-OC43 (Betacoronavirus lineage a) described in the 1960s were known to be agents of respiratory infections, they lent little attention.
T19 220-389 Sentence denotes In the early 2000s, two other coronaviruses responsible for similar diseases were identified, the HCoV-NL63 (Alphacoronavirus) and HCoV-HKU1 (Betacoronavirus lineage a).
T20 390-522 Sentence denotes Even if the health authorities pay little attention to these viruses, sometimes they can cause deaths in people with fragile health.
T21 523-702 Sentence denotes A study in Switzerland reported that among 279 subjects who had bronchoalveolar lavage for investigation of respiratory symptoms, 29 were tested positive for HCoV (detection rate:
T22 703-1483 Sentence denotes 10.4%).21 A large-scale polymerase chain reaction (PCR) screening of 11,661 nasal samples from European patients with respiratory disease, found 35 HCoV-229E (0.30%), 61 HCoV-HKU1 (0.52%), 75 HCoV-NL63 (0.64%), and 111 HCoV-OC43 (0.85%).22 A similar study in Africa on 5573 nasal samples from child hospitalized for pneumonia found 114 HCoV-229E (2.05%), 163 HCoV-NL63 (2.93%), and 111 HCoV-OC43 (1.99%).23 Two Chinese studies involving almost 25,000 throat and nasal swab samples from patients with acute respiratory tract infections revealed 114 HCoV-229E (0.37%–0.57%), 61 HCoV-HKU1 (0.18%–0.33%), 104 HCoV-NL63 (0.33%–0.52%), and 523 HCoV-OC43 (1.36%–3.04%), respectively.24 , 25 The fatality rate of the coronaviruses causing the common winter cold was estimated 0.5%–1.5%.26

2_test

Id Subject Object Predicate Lexical cue
32414646-20554810-62239765 940-942 20554810 denotes 22
32414646-29741740-62239766 1107-1109 29741740 denotes 23
32414646-29377913-62239767 1384-1386 29377913 denotes 25