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PMC:7200337 / 39860-40984 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
32505227-32284614-46575327 409-413 32284614 denotes 2020
32505227-32284614-46575329 603-607 32284614 denotes 2020
32505227-18832706-46575330 721-725 18832706 denotes 2008
32505227-29654146-46575331 1118-1122 29654146 denotes 2018
T4570 409-413 32284614 denotes 2020
T63291 603-607 32284614 denotes 2020
T22882 721-725 18832706 denotes 2008
T81493 1118-1122 29654146 denotes 2018

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T406 75-79 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T407 225-230 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T408 273-276 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T409 516-521 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T410 559-564 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T411 676-680 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T412 950-954 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T413 1099-1104 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T264 104-112 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T265 483-491 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T266 698-706 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T267 763-771 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T499 73-79 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T500 147-151 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T501 147-151 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T502 213-222 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T503 223-230 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T504 281-285 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T505 287-291 http://purl.obolibrary.org/obo/PR_000001343 denotes CD69
T506 293-297 http://purl.obolibrary.org/obo/PR_000001380 denotes CD25
T507 299-303 http://purl.obolibrary.org/obo/PR_000001307 denotes CD44
T508 510-513 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T509 514-521 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T510 538-547 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T511 553-556 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T512 557-564 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T513 630-631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T514 661-664 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T515 670-673 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T516 674-680 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T517 710-712 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T518 710-712 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T519 744-745 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T520 948-954 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T521 1038-1047 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling
T522 1078-1087 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T523 1088-1104 http://purl.obolibrary.org/obo/CL_0000911 denotes effector T cells
T524 1118-1122 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T203 277-279 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T204 336-338 Chemical denotes Ni http://purl.obolibrary.org/obo/CHEBI_28112
T205 353-356 Chemical denotes Guo http://purl.obolibrary.org/obo/CHEBI_16750
T206 710-712 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T207 816-818 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T208 904-906 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T209 1005-1007 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T210 1088-1096 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T138 1038-1047 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1328 510-513 Gene denotes CD8 Gene:925
1329 553-556 Gene denotes CD4 Gene:920
1330 661-664 Gene denotes CD8 Gene:925
1331 670-673 Gene denotes CD4 Gene:920
1332 987-989 Gene denotes to Gene:6999
1333 846-848 Gene denotes to Gene:6999
1334 527-529 Gene denotes to Gene:6999
1335 698-706 Species denotes SARS-CoV Tax:694009
1336 772-780 Species denotes patients Tax:9606
1337 104-112 Disease denotes COVID-19 MESH:C000657245
1338 483-491 Disease denotes COVID-19 MESH:C000657245
1339 763-771 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T217 0-113 Sentence denotes Currently, little is known about specific phenotypical and/or functional T cell changes associated with COVID-19.
T218 114-456 Sentence denotes In the majority of preprints and peer-reviewed studies, there are reports of increased presence of activated T cells (Figure 3) characterized by expression of HLA-DR, CD38, CD69, CD25, CD44, and Ki-67 (Braun et al., 2020, Ni et al., 2020, Guo et al., 2020, Liao et al., 2020, Thevarajan et al., 2020, Yang et al., 2020a, Zheng et al., 2020a).
T219 457-727 Sentence denotes Generally, independent of COVID-19 disease severity, CD8 T cells seem to be more activated than CD4 T cells (Qin et al., 2020, Thevarajan et al., 2020, Yang et al., 2020a), a finding that echoes stronger CD8 than CD4 T cell responses during SARS-CoV-1 (Li et al., 2008).
T220 728-903 Sentence denotes Furthermore, in a case study of 10 COVID-19 patients, Diao et al. showed that levels of PD-1 increased from prodromal to symptomatic stages of the disease (Diao et al., 2020).
T221 904-1124 Sentence denotes PD-1 expression is commonly associated with T cell exhaustion, but it is important to emphasize that PD-1 is primarily induced by TCR signaling; it is thus also expressed by activated effector T cells (Ahn et al., 2018).