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PMC:7200337 / 21842-22874 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
32505227-26472762-46575274 536-540 26472762 denotes 2015
32505227-27670241-46575275 560-564 27670241 denotes 2017
32505227-29719539-46575276 665-669 29719539 denotes 2018
T72451 536-540 26472762 denotes 2015
T73641 560-564 27670241 denotes 2017
T99238 665-669 29719539 denotes 2018

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T166 3-8 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T167 41-46 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T168 118-126 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T169 121-126 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T170 145-150 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T171 369-377 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T172 372-377 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T173 410-415 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T174 486-490 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T175 491-499 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T176 494-499 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T177 603-610 Body_part denotes NK cell http://purl.org/sig/ont/fma/fma63147
T178 606-610 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T179 750-754 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T180 755-761 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T181 809-818 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T182 839-844 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T183 941-948 Body_part denotes NK cell http://purl.org/sig/ont/fma/fma63147
T184 944-948 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T185 981-986 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T186 994-999 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T17 41-46 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T18 145-150 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 486-490 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 750-754 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T21 755-761 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T22 981-986 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T147 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T148 154-162 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T149 629-648 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T150 639-648 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T151 724-732 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T152 848-856 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T153 1003-1011 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T185 0-8 http://purl.obolibrary.org/obo/CL_0000623 denotes NK Cells
T186 41-46 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T187 41-46 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T188 118-126 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T189 145-150 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T190 145-150 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T191 301-302 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T192 338-339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T193 369-377 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T194 410-415 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T195 486-490 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T196 486-490 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T197 491-499 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T198 577-580 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T199 603-610 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cell
T200 665-669 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T201 703-705 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T202 744-749 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T203 750-754 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T204 750-754 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T205 809-818 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T206 839-844 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T207 941-948 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cell
T208 981-986 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T209 981-986 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T210 994-999 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T104 688-695 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T105 697-702 Chemical denotes CXCL9 http://purl.obolibrary.org/obo/CHEBI_138154
T106 792-798 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
683 50-58 Disease denotes COVID-19 MESH:C000657245
702 571-576 Gene denotes CXCR3 Gene:2833
703 682-687 Gene denotes CXCR3 Gene:2833
704 697-705 Gene denotes CXCL9-11 Gene:4283
705 786-791 Gene denotes CXCR3 Gene:2833
706 910-915 Gene denotes CXCR3 Gene:2833
707 987-989 Gene denotes to Gene:6999
708 592-594 Gene denotes to Gene:6999
709 163-171 Species denotes patients Tax:9606
710 421-429 Species denotes patients Tax:9606
711 744-749 Species denotes human Tax:9606
712 857-865 Species denotes patients Tax:9606
713 1012-1020 Species denotes patients Tax:9606
714 629-638 Species denotes influenza Tax:11520
715 154-162 Disease denotes COVID-19 MESH:C000657245
716 639-648 Disease denotes infection MESH:D007239
717 724-743 Disease denotes SARS-CoV-2-infected MESH:C000657245
718 848-856 Disease denotes COVID-19 MESH:C000657245
719 1003-1011 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T123 0-67 Sentence denotes NK Cells Are Decreased in the Peripheral Blood of COVID-19 patients
T124 68-300 Sentence denotes Multiple studies have reported reduced numbers of NK cells in the peripheral blood of COVID-19 patients, which is associated with severity of the disease (Song et al., 2020, Wang et al., 2020f, Yu et al., 2020, Zheng et al., 2020b).
T125 301-469 Sentence denotes A recent scRNA-seq analysis revealed a transcriptomic signature for NK cells that was equally represented in lungs from patients and healthy donors (Liao et al., 2020).
T126 470-671 Sentence denotes The majority of lung NK cells are non-resident (Gasteiger et al., 2015, Marquardt et al., 2017), and CXCR3 has been shown to mediate NK cell infiltration upon influenza infection (Carlin et al., 2018).
T127 672-886 Sentence denotes In vitro, CXCR3 ligands (CXCL9-11) are increased in SARS-CoV-2-infected human lung tissue (Chu et al., 2020), and CXCR3-ligand-producing monocytes are expanded in the lungs of COVID-19 patients (Liao et al., 2020).
T128 887-1032 Sentence denotes This suggests that the CXCR3 pathway might facilitate NK cell recruitment from the peripheral blood to the lungs in COVID-19 patients (Figure 2).