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PMC:7200337 / 21842-22874
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32505227-26472762-46575274 | 536-540 | 26472762 | denotes | 2015 |
32505227-27670241-46575275 | 560-564 | 27670241 | denotes | 2017 |
32505227-29719539-46575276 | 665-669 | 29719539 | denotes | 2018 |
T72451 | 536-540 | 26472762 | denotes | 2015 |
T73641 | 560-564 | 27670241 | denotes | 2017 |
T99238 | 665-669 | 29719539 | denotes | 2018 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T166 | 3-8 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
T167 | 41-46 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
T168 | 118-126 | Body_part | denotes | NK cells | http://purl.org/sig/ont/fma/fma63147 |
T169 | 121-126 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T170 | 145-150 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T171 | 369-377 | Body_part | denotes | NK cells | http://purl.org/sig/ont/fma/fma63147 |
T172 | 372-377 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T173 | 410-415 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
T174 | 486-490 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T175 | 491-499 | Body_part | denotes | NK cells | http://purl.org/sig/ont/fma/fma63147 |
T176 | 494-499 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T177 | 603-610 | Body_part | denotes | NK cell | http://purl.org/sig/ont/fma/fma63147 |
T178 | 606-610 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T179 | 750-754 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T180 | 755-761 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
T181 | 809-818 | Body_part | denotes | monocytes | http://purl.org/sig/ont/fma/fma62864 |
T182 | 839-844 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
T183 | 941-948 | Body_part | denotes | NK cell | http://purl.org/sig/ont/fma/fma63147 |
T184 | 944-948 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T185 | 981-986 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T186 | 994-999 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T17 | 41-46 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T18 | 145-150 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T19 | 486-490 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T20 | 750-754 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T21 | 755-761 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
T22 | 981-986 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T147 | 50-58 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T148 | 154-162 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T149 | 629-648 | Disease | denotes | influenza infection | http://purl.obolibrary.org/obo/MONDO_0005812 |
T150 | 639-648 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T151 | 724-732 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T152 | 848-856 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T153 | 1003-1011 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T185 | 0-8 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK Cells |
T186 | 41-46 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
T187 | 41-46 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
T188 | 118-126 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cells |
T189 | 145-150 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T190 | 145-150 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T191 | 301-302 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T192 | 338-339 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T193 | 369-377 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cells |
T194 | 410-415 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
T195 | 486-490 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T196 | 486-490 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T197 | 491-499 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cells |
T198 | 577-580 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T199 | 603-610 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cell |
T200 | 665-669 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
T201 | 703-705 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T202 | 744-749 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T203 | 750-754 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T204 | 750-754 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T205 | 809-818 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocytes |
T206 | 839-844 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
T207 | 941-948 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cell |
T208 | 981-986 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T209 | 981-986 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T210 | 994-999 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T104 | 688-695 | Chemical | denotes | ligands | http://purl.obolibrary.org/obo/CHEBI_52214 |
T105 | 697-702 | Chemical | denotes | CXCL9 | http://purl.obolibrary.org/obo/CHEBI_138154 |
T106 | 792-798 | Chemical | denotes | ligand | http://purl.obolibrary.org/obo/CHEBI_52214 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
683 | 50-58 | Disease | denotes | COVID-19 | MESH:C000657245 |
702 | 571-576 | Gene | denotes | CXCR3 | Gene:2833 |
703 | 682-687 | Gene | denotes | CXCR3 | Gene:2833 |
704 | 697-705 | Gene | denotes | CXCL9-11 | Gene:4283 |
705 | 786-791 | Gene | denotes | CXCR3 | Gene:2833 |
706 | 910-915 | Gene | denotes | CXCR3 | Gene:2833 |
707 | 987-989 | Gene | denotes | to | Gene:6999 |
708 | 592-594 | Gene | denotes | to | Gene:6999 |
709 | 163-171 | Species | denotes | patients | Tax:9606 |
710 | 421-429 | Species | denotes | patients | Tax:9606 |
711 | 744-749 | Species | denotes | human | Tax:9606 |
712 | 857-865 | Species | denotes | patients | Tax:9606 |
713 | 1012-1020 | Species | denotes | patients | Tax:9606 |
714 | 629-638 | Species | denotes | influenza | Tax:11520 |
715 | 154-162 | Disease | denotes | COVID-19 | MESH:C000657245 |
716 | 639-648 | Disease | denotes | infection | MESH:D007239 |
717 | 724-743 | Disease | denotes | SARS-CoV-2-infected | MESH:C000657245 |
718 | 848-856 | Disease | denotes | COVID-19 | MESH:C000657245 |
719 | 1003-1011 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T123 | 0-67 | Sentence | denotes | NK Cells Are Decreased in the Peripheral Blood of COVID-19 patients |
T124 | 68-300 | Sentence | denotes | Multiple studies have reported reduced numbers of NK cells in the peripheral blood of COVID-19 patients, which is associated with severity of the disease (Song et al., 2020, Wang et al., 2020f, Yu et al., 2020, Zheng et al., 2020b). |
T125 | 301-469 | Sentence | denotes | A recent scRNA-seq analysis revealed a transcriptomic signature for NK cells that was equally represented in lungs from patients and healthy donors (Liao et al., 2020). |
T126 | 470-671 | Sentence | denotes | The majority of lung NK cells are non-resident (Gasteiger et al., 2015, Marquardt et al., 2017), and CXCR3 has been shown to mediate NK cell infiltration upon influenza infection (Carlin et al., 2018). |
T127 | 672-886 | Sentence | denotes | In vitro, CXCR3 ligands (CXCL9-11) are increased in SARS-CoV-2-infected human lung tissue (Chu et al., 2020), and CXCR3-ligand-producing monocytes are expanded in the lungs of COVID-19 patients (Liao et al., 2020). |
T128 | 887-1032 | Sentence | denotes | This suggests that the CXCR3 pathway might facilitate NK cell recruitment from the peripheral blood to the lungs in COVID-19 patients (Figure 2). |