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PMC:7200337 / 1451-2966 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
32505227-27344959-46575204 1270-1274 27344959 denotes 2016
32505227-32109011-46575205 1352-1356 32109011 denotes 2020
T36575 1270-1274 27344959 denotes 2016
T48054 1352-1356 32109011 denotes 2020

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T43388 769-773 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T61661 998-1006 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 48-95 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T23 48-81 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T24 97-105 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 127-151 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T26 153-161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 301-309 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 396-411 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T29 402-411 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 1014-1033 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T31 1046-1054 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1084-1088 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 1112-1120 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 1283-1291 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 1314-1322 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T50209 218-219 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39945 249-261 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T15961 277-279 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T45606 383-384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86620 612-613 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74980 661-664 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T78216 769-773 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T29604 829-830 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87410 858-863 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T77204 867-872 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18672 1407-1410 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 692-703 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T2 781-783 Chemical denotes Lu http://purl.obolibrary.org/obo/CHEBI_33382

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 402-411 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 964-974 Phenotype denotes mild fever http://purl.obolibrary.org/obo/HP_0011134
T3 976-981 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 987-994 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T5 998-1012 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T6 1014-1033 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
84 692-723 Gene denotes angiotensin-converting enzyme 2 Gene:59272
85 725-729 Gene denotes ACE2 Gene:59272
86 1081-1083 Gene denotes to Gene:6999
87 995-997 Gene denotes to Gene:6999
88 961-963 Gene denotes to Gene:6999
89 864-866 Gene denotes to Gene:6999
90 658-660 Gene denotes to Gene:6999
91 528-530 Gene denotes to Gene:6999
92 323-325 Gene denotes to Gene:6999
93 48-95 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
94 97-107 Species denotes SARS-CoV-2 Tax:2697049
95 301-311 Species denotes SARS-CoV-2 Tax:2697049
96 614-629 Species denotes betacoronavirus Tax:694002
97 665-678 Species denotes coronaviruses Tax:11118
98 680-684 Species denotes CoVs Tax:11118
99 858-863 Species denotes human Tax:9606
100 867-872 Species denotes human Tax:9606
101 1046-1056 Species denotes SARS-CoV-2 Tax:2697049
102 1112-1120 Species denotes SARS-CoV Tax:694009
103 1165-1175 Species denotes MERS) CoVs Tax:1335626
104 1283-1293 Species denotes SARS-CoV-2 Tax:2697049
105 1314-1322 Species denotes SARS-CoV Tax:694009
106 1328-1336 Species denotes MERS-CoV Tax:1335626
107 127-151 Disease denotes coronavirus disease 2019 MESH:C000657245
108 153-161 Disease denotes COVID-19 MESH:C000657245
109 396-411 Disease denotes viral pneumonia
110 838-846 Disease denotes zoonotic MESH:D015047
111 969-974 Disease denotes fever MESH:D005334
112 976-981 Disease denotes cough MESH:D003371
113 987-994 Disease denotes dyspnea MESH:D004417
114 1014-1033 Disease denotes respiratory failure MESH:D012131
115 1039-1044 Disease denotes death MESH:D003643
116 1128-1163 Disease denotes Middle Eastern respiratory syndrome MESH:D018352
117 1185-1193 Disease denotes zoonotic MESH:D015047

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-286 Sentence denotes The recent emergence and rapid global spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the resulting coronavirus disease 2019 (COVID-19) poses an unprecedented health crisis that was declared a pandemic by the World Health Organization (WHO) on March 11, 2020.
T13 287-498 Sentence denotes The origin of SARS-CoV-2 was traced to the city of Wuhan in the province of Hubei, China, where a cluster of viral pneumonia cases was first detected, many in connection with the Huanan Seafood Wholesale Market.
T14 499-818 Sentence denotes China reported this outbreak to the WHO on December 31, 2019 and soon after identified the causative pathogen as a betacoronavirus with high sequence homology to bat coronaviruses (CoVs) using angiotensin-converting enzyme 2 (ACE2) receptor as the dominant mechanism of cell entry (Lu et al., 2020a, Wan et al., 2020b).
T15 819-1045 Sentence denotes Following a likely zoonotic spillover, human-to-human transmission events were confirmed with clinical presentations ranging from no symptoms to mild fever, cough, and dyspnea to cytokine storm, respiratory failure, and death.
T16 1046-1276 Sentence denotes SARS-CoV-2 is also closely related to SARS (retrospectively named SARS-CoV-1) and Middle Eastern respiratory syndrome (MERS) CoVs, causing zoonotic epidemic and local outbreaks in 2003 and 2012, respectively (de Wit et al., 2016).
T17 1277-1515 Sentence denotes While SARS-CoV-2 is not as lethal as SARS-CoV-1 or MERS-CoV (Fauci et al., 2020), the considerable spread of the current pandemic has brought tremendous pressure and disastrous consequences for public health and medical systems worldwide.