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PMC:7200337 / 1438-3838 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
32505227-27344959-46575204 1283-1287 27344959 denotes 2016
32505227-32109011-46575205 1365-1369 32109011 denotes 2020
T36575 1283-1287 27344959 denotes 2016
T48054 1365-1369 32109011 denotes 2020

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T43388 782-786 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T61661 1011-1019 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 61-108 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T23 61-94 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T24 110-118 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 140-164 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T26 166-174 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 314-322 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 409-424 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T29 415-424 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 1027-1046 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T31 1059-1067 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1097-1101 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 1125-1133 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 1296-1304 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 1327-1335 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 1610-1618 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 1707-1715 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 2142-2150 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 2232-2240 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T50209 231-232 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39945 262-274 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T15961 290-292 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T45606 396-397 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86620 625-626 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74980 674-677 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T78216 782-786 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T29604 842-843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87410 871-876 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T77204 880-885 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18672 1420-1423 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T39663 1567-1570 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T98317 1596-1597 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84014 2011-2015 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T92316 2011-2015 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T1646 2133-2138 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T78093 2179-2184 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 705-716 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T2 794-796 Chemical denotes Lu http://purl.obolibrary.org/obo/CHEBI_33382

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 415-424 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 977-987 Phenotype denotes mild fever http://purl.obolibrary.org/obo/HP_0011134
T3 989-994 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 1000-1007 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T5 1011-1025 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T6 1027-1046 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T7 1598-1606 Phenotype denotes plethora http://purl.obolibrary.org/obo/HP_0001050

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T554 1691-1703 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T95752 2203-2228 http://purl.obolibrary.org/obo/GO_0002250 denotes adaptive immune responses

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
84 705-736 Gene denotes angiotensin-converting enzyme 2 Gene:59272
85 738-742 Gene denotes ACE2 Gene:59272
86 1094-1096 Gene denotes to Gene:6999
87 1008-1010 Gene denotes to Gene:6999
88 974-976 Gene denotes to Gene:6999
89 877-879 Gene denotes to Gene:6999
90 671-673 Gene denotes to Gene:6999
91 541-543 Gene denotes to Gene:6999
92 336-338 Gene denotes to Gene:6999
93 61-108 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
94 110-120 Species denotes SARS-CoV-2 Tax:2697049
95 314-324 Species denotes SARS-CoV-2 Tax:2697049
96 627-642 Species denotes betacoronavirus Tax:694002
97 678-691 Species denotes coronaviruses Tax:11118
98 693-697 Species denotes CoVs Tax:11118
99 871-876 Species denotes human Tax:9606
100 880-885 Species denotes human Tax:9606
101 1059-1069 Species denotes SARS-CoV-2 Tax:2697049
102 1125-1133 Species denotes SARS-CoV Tax:694009
103 1178-1188 Species denotes MERS) CoVs Tax:1335626
104 1296-1306 Species denotes SARS-CoV-2 Tax:2697049
105 1327-1335 Species denotes SARS-CoV Tax:694009
106 1341-1349 Species denotes MERS-CoV Tax:1335626
107 140-164 Disease denotes coronavirus disease 2019 MESH:C000657245
108 166-174 Disease denotes COVID-19 MESH:C000657245
109 409-424 Disease denotes viral pneumonia
110 851-859 Disease denotes zoonotic MESH:D015047
111 982-987 Disease denotes fever MESH:D005334
112 989-994 Disease denotes cough MESH:D003371
113 1000-1007 Disease denotes dyspnea MESH:D004417
114 1027-1046 Disease denotes respiratory failure MESH:D012131
115 1052-1057 Disease denotes death MESH:D003643
116 1141-1176 Disease denotes Middle Eastern respiratory syndrome MESH:D018352
117 1198-1206 Disease denotes zoonotic MESH:D015047
127 2229-2231 Gene denotes to Gene:6999
128 1929-1931 Gene denotes to Gene:6999
129 1668-1670 Gene denotes to Gene:6999
130 1553-1555 Gene denotes to Gene:6999
131 2232-2242 Species denotes SARS-CoV-2 Tax:2697049
132 2255-2259 Species denotes CoVs Tax:11118
133 1610-1618 Disease denotes COVID-19 MESH:C000657245
134 1707-1715 Disease denotes COVID-19 MESH:C000657245
135 2142-2150 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-12 Sentence denotes Introduction
T12 13-299 Sentence denotes The recent emergence and rapid global spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the resulting coronavirus disease 2019 (COVID-19) poses an unprecedented health crisis that was declared a pandemic by the World Health Organization (WHO) on March 11, 2020.
T13 300-511 Sentence denotes The origin of SARS-CoV-2 was traced to the city of Wuhan in the province of Hubei, China, where a cluster of viral pneumonia cases was first detected, many in connection with the Huanan Seafood Wholesale Market.
T14 512-831 Sentence denotes China reported this outbreak to the WHO on December 31, 2019 and soon after identified the causative pathogen as a betacoronavirus with high sequence homology to bat coronaviruses (CoVs) using angiotensin-converting enzyme 2 (ACE2) receptor as the dominant mechanism of cell entry (Lu et al., 2020a, Wan et al., 2020b).
T15 832-1058 Sentence denotes Following a likely zoonotic spillover, human-to-human transmission events were confirmed with clinical presentations ranging from no symptoms to mild fever, cough, and dyspnea to cytokine storm, respiratory failure, and death.
T16 1059-1289 Sentence denotes SARS-CoV-2 is also closely related to SARS (retrospectively named SARS-CoV-1) and Middle Eastern respiratory syndrome (MERS) CoVs, causing zoonotic epidemic and local outbreaks in 2003 and 2012, respectively (de Wit et al., 2016).
T17 1290-1528 Sentence denotes While SARS-CoV-2 is not as lethal as SARS-CoV-1 or MERS-CoV (Fauci et al., 2020), the considerable spread of the current pandemic has brought tremendous pressure and disastrous consequences for public health and medical systems worldwide.
T18 1529-1753 Sentence denotes The scientific response to the crisis has been extraordinary, with a plethora of COVID-19 studies posted in preprint servers in an attempt to rapidly unravel the pathogenesis of COVID-19 and potential therapeutic strategies.
T19 1754-2162 Sentence denotes In response, trainees and faculty members of the Precision Immunology Institute at the Icahn School of Medicine at Mount Sinai (PrIISM) have initiated an institutional effort to critically review the preprint literature (Vabret et al., 2020), together with peer-reviewed articles published in traditional journals, and summarize the current state of science on the fast-evolving field of COVID-19 immunology.
T20 2163-2400 Sentence denotes We thematically focus on the innate and adaptive immune responses to SARS-CoV-2 and related CoVs, clinical studies and prognostic laboratory correlates, current therapeutic strategies, prospective clinical trials, and vaccine approaches.