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PMC:7199903 / 9588-10093 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 178-181 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 57-65 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 390-398 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T61 114-115 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 150-157 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T63 170-172 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T64 170-172 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T98 150-157 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T99 170-172 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T100 184-193 Chemical denotes immunogen http://purl.obolibrary.org/obo/CHEBI_60816

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T50 34-39 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T51 245-250 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T52 490-494 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T65863 0-8 IN denotes Although
T60194 9-19 JJ denotes unoccupied
T7395 20-33 NN denotes glycosylation
T62677 34-39 NNS denotes sites
T81150 40-44 VBD denotes were
T42144 45-53 VBN denotes detected
T48798 54-56 IN denotes on
T2576 57-67 NNP denotes SARS-CoV-2
T51503 68-69 NNP denotes S
T76331 69-70 -COMMA- denotes ,
T71519 71-75 WRB denotes when
T77053 76-86 VBN denotes quantified
T75961 87-91 PRP denotes they
T6297 92-96 VBD denotes were
T58978 97-105 VBN denotes revealed
T59972 106-108 TO denotes to
T92745 109-113 VB denotes form
T33122 114-115 DT denotes a
T31132 116-120 RB denotes very
T38290 121-126 JJ denotes minor
T19196 127-136 NN denotes component
T48286 137-139 IN denotes of
T83039 140-143 DT denotes the
T68252 144-149 JJ denotes total
T62165 150-157 NN denotes peptide
T4213 158-162 NN denotes pool
T74217 163-164 -LRB- denotes (
T34758 164-169 NN denotes table
T7366 170-172 NN denotes S2
T74906 172-173 -RRB- denotes )
T57960 175-177 IN denotes In
T42540 178-183 NN denotes HIV-1
T15633 184-193 NN denotes immunogen
T63653 194-202 NN denotes research
T27827 202-203 -COMMA- denotes ,
T17042 204-207 DT denotes the
T33433 208-213 NNS denotes holes
T1898 214-223 VBN denotes generated
T37277 224-226 IN denotes by
T71199 227-237 JJ denotes unoccupied
T33886 238-244 NN denotes glycan
T74014 245-250 NNS denotes sites
T26582 251-255 VBP denotes have
T97350 256-260 VBN denotes been
T88152 261-266 VBN denotes shown
T81834 267-269 TO denotes to
T33097 270-272 VB denotes be
T62246 273-284 JJ denotes immunogenic
T48675 285-288 CC denotes and
T32889 289-300 RB denotes potentially
T36047 301-305 VBP denotes give
T43864 306-310 NN denotes rise
T23465 311-313 TO denotes to
T43488 314-325 VBG denotes distracting
T59820 326-334 NNS denotes epitopes
T82836 335-336 -LRB- denotes (
T41818 336-338 CD denotes 26
T87241 338-339 -RRB- denotes )
T58684 341-344 DT denotes The
T56128 345-349 JJ denotes high
T26972 350-359 NN denotes occupancy
T77052 360-362 IN denotes of
T61237 363-371 JJ denotes N-linked
T20466 372-378 NN denotes glycan
T55200 379-386 NNS denotes sequons
T78865 387-389 IN denotes of
T61277 390-400 NN denotes SARS-CoV-2
T93285 401-402 NN denotes S
T2047 403-412 VBZ denotes indicates
T47714 413-417 IN denotes that
T82325 418-429 JJ denotes recombinant
T38613 430-440 NNS denotes immunogens
T54133 441-445 MD denotes will
T6430 446-449 RB denotes not
T5233 450-457 VB denotes require
T93225 458-465 JJ denotes further
T87423 466-478 NN denotes optimization
T51599 479-481 TO denotes to
T32198 482-489 VB denotes enhance
T24696 490-494 NN denotes site
T22130 495-504 NN denotes occupancy
R95535 T58978 T65863 arg1Of revealed,Although
R36955 T42144 T65863 arg2Of detected,Although
R57798 T62677 T60194 arg1Of sites,unoccupied
R9373 T62677 T7395 arg1Of sites,glycosylation
R57347 T62677 T81150 arg1Of sites,were
R36046 T42144 T81150 arg2Of detected,were
R84085 T62677 T42144 arg2Of sites,detected
R75515 T42144 T48798 arg1Of detected,on
R88107 T51503 T48798 arg2Of S,on
R48789 T51503 T2576 arg1Of S,SARS-CoV-2
R80578 T58978 T76331 arg1Of revealed,","
R76519 T58978 T71519 arg1Of revealed,when
R15932 T77053 T71519 arg2Of quantified,when
R12192 T4213 T62165 arg1Of pool,peptide
R29071 T4213 T74217 arg1Of pool,(
R32305 T7366 T74217 arg2Of S2,(
R24284 T74906 T74217 arg3Of ),(
R52043 T7366 T34758 arg1Of S2,table
R68764 T88152 T57960 arg1Of shown,In
R8587 T63653 T57960 arg2Of research,In
R88226 T63653 T42540 arg1Of research,HIV-1
R53466 T63653 T15633 arg1Of research,immunogen
R77180 T88152 T27827 arg1Of shown,","
R9598 T93285 T61277 arg1Of S,SARS-CoV-2
R14042 T26972 T2047 arg1Of occupancy,indicates
R21004 T5233 T2047 arg2Of require,indicates
R27288 T5233 T47714 arg1Of require,that
R17307 T38613 T82325 arg1Of immunogens,recombinant
R25367 T38613 T54133 arg1Of immunogens,will
R32427 T5233 T54133 arg2Of require,will
R69032 T5233 T6430 arg1Of require,not
R76938 T75961 T6297 arg1Of they,were
R40002 T58978 T6297 arg2Of revealed,were
R5541 T75961 T58978 arg2Of they,revealed
R98656 T92745 T58978 arg3Of form,revealed
R1924 T92745 T59972 arg1Of form,to
R7837 T75961 T92745 arg1Of they,form
R55327 T19196 T92745 arg2Of component,form
R40598 T19196 T33122 arg1Of component,a
R74584 T38290 T31132 arg1Of minor,very
R89442 T19196 T38290 arg1Of component,minor
R72689 T19196 T48286 arg1Of component,of
R80016 T4213 T48286 arg2Of pool,of
R55839 T4213 T83039 arg1Of pool,the
R12378 T4213 T68252 arg1Of pool,total
R59127 T33433 T17042 arg1Of holes,the
R16993 T33433 T1898 arg2Of holes,generated
R58977 T1898 T37277 arg1Of generated,by
R54438 T74014 T37277 arg2Of sites,by
R50539 T74014 T71199 arg1Of sites,unoccupied
R34846 T74014 T33886 arg1Of sites,glycan
R20956 T33433 T26582 arg1Of holes,have
R21053 T88152 T26582 arg2Of shown,have
R88469 T33433 T97350 arg1Of holes,been
R79598 T88152 T97350 arg2Of shown,been
R40460 T33433 T88152 arg2Of holes,shown
R83284 T48675 T88152 arg3Of and,shown
R91813 T48675 T81834 arg1Of and,to
R60693 T33433 T33097 arg1Of holes,be
R42109 T62246 T33097 arg2Of immunogenic,be
R12584 T33433 T62246 arg1Of holes,immunogenic
R30095 T33097 T48675 arg1Of be,and
R31340 T36047 T48675 arg2Of give,and
R89898 T36047 T32889 arg1Of give,potentially
R20454 T33433 T36047 arg1Of holes,give
R20449 T43864 T36047 arg2Of rise,give
R26730 T36047 T23465 arg1Of give,to
R11487 T59820 T23465 arg2Of epitopes,to
R70719 T59820 T43488 arg1Of epitopes,distracting
R79410 T59820 T82836 arg1Of epitopes,(
R41647 T41818 T82836 arg2Of 26,(
R3899 T87241 T82836 arg3Of ),(
R5807 T26972 T58684 arg1Of occupancy,The
R22543 T26972 T56128 arg1Of occupancy,high
R57808 T26972 T77052 arg1Of occupancy,of
R4067 T55200 T77052 arg2Of sequons,of
R97120 T55200 T61237 arg1Of sequons,N-linked
R65732 T55200 T20466 arg1Of sequons,glycan
R4895 T55200 T78865 arg1Of sequons,of
R57508 T93285 T78865 arg2Of S,of
R27467 T38613 T5233 arg1Of immunogens,require
R21159 T87423 T5233 arg2Of optimization,require
R45610 T87423 T93225 arg1Of optimization,further
R83112 T32198 T51599 arg1Of enhance,to
R67259 T87423 T51599 modOf optimization,to
R38530 T22130 T32198 arg2Of occupancy,enhance
R2326 T22130 T24696 arg1Of occupancy,site

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T53 178-181 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T77 150-157 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T36 57-67 Species denotes SARS-CoV-2 NCBItxid:2697049
T37 178-183 Species denotes HIV-1 NCBItxid:11676
T38 390-400 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T66 0-174 Sentence denotes Although unoccupied glycosylation sites were detected on SARS-CoV-2 S, when quantified they were revealed to form a very minor component of the total peptide pool (table S2).
T67 175-340 Sentence denotes In HIV-1 immunogen research, the holes generated by unoccupied glycan sites have been shown to be immunogenic and potentially give rise to distracting epitopes (26).
T68 341-505 Sentence denotes The high occupancy of N-linked glycan sequons of SARS-CoV-2 S indicates that recombinant immunogens will not require further optimization to enhance site occupancy.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 57-67 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T33 390-400 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
321 401-402 Gene denotes S Gene:43740568
322 68-69 Gene denotes S Gene:43740568
323 57-67 Species denotes SARS-CoV-2 Tax:2697049
324 178-183 Species denotes HIV-1 Tax:11676
325 390-400 Species denotes SARS-CoV-2 Tax:2697049
326 238-244 Chemical denotes glycan MESH:D011134
327 363-378 Chemical denotes N-linked glycan

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T32 20-33 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T30 20-33 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T35 20-33 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T66 0-174 Sentence denotes Although unoccupied glycosylation sites were detected on SARS-CoV-2 S, when quantified they were revealed to form a very minor component of the total peptide pool (table S2).
T67 175-340 Sentence denotes In HIV-1 immunogen research, the holes generated by unoccupied glycan sites have been shown to be immunogenic and potentially give rise to distracting epitopes (26).
T68 341-505 Sentence denotes The high occupancy of N-linked glycan sequons of SARS-CoV-2 S indicates that recombinant immunogens will not require further optimization to enhance site occupancy.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
321 401-402 Gene denotes S Gene:43740568
322 68-69 Gene denotes S Gene:43740568
323 57-67 Species denotes SARS-CoV-2 Tax:2697049
324 178-183 Species denotes HIV-1 Tax:11676
325 390-400 Species denotes SARS-CoV-2 Tax:2697049
326 238-244 Chemical denotes glycan MESH:D011134
327 363-378 Chemical denotes N-linked glycan