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PMC:7199903 / 9314-9514 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T52 25-32 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 181-194 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 137-145 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 7-9 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T93 25-32 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T94 89-96 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T95 150-157 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T96 181-194 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T47 10-15 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T48 176-180 http://purl.obolibrary.org/obo/IDO_0000531 denotes host

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1550 0-2 IN denotes Of
T1551 3-6 DT denotes the
T1552 7-9 CD denotes 22
T1553 10-15 NNS denotes sites
T1554 16-18 IN denotes on
T1555 19-22 DT denotes the
T1556 23-24 NN denotes S
T1557 25-32 NN denotes protein
T1558 32-33 -COMMA- denotes ,
T1559 34-35 CD denotes 8
T1560 36-43 VBP denotes contain
T1561 44-55 JJ denotes substantial
T1562 56-67 NNS denotes populations
T1563 68-70 IN denotes of
T1564 71-88 JJ denotes oligomannose-type
T1565 89-96 NNS denotes glycans
T1566 96-97 -COMMA- denotes ,
T1567 98-110 VBG denotes highlighting
T1568 111-114 WRB denotes how
T1569 115-118 DT denotes the
T1570 119-129 NN denotes processing
T1571 130-132 IN denotes of
T1572 133-136 DT denotes the
T1573 137-147 NN denotes SARS-CoV-2
T1574 148-149 NN denotes S
T1575 150-157 NNS denotes glycans
T1576 158-160 VBZ denotes is
T1577 161-170 JJ denotes divergent
T1578 171-175 IN denotes from
T1579 176-180 NN denotes host
T1580 181-194 NNS denotes glycoproteins
T1581 195-196 -LRB- denotes (
T1582 196-198 CD denotes 25
T1583 198-199 -RRB- denotes )
R1562 T1557 T1555 arg1Of protein,the
R1563 T1557 T1556 arg1Of protein,S
R1564 T1560 T1558 arg1Of contain,","
R1565 T1559 T1560 arg1Of 8,contain
R1566 T1562 T1560 arg2Of populations,contain
R1567 T1562 T1561 arg1Of populations,substantial
R1568 T1562 T1563 arg1Of populations,of
R1589 T1583 T1581 arg3Of ),(
R1556 T1560 T1550 arg1Of contain,Of
R1557 T1553 T1550 arg2Of sites,Of
R1558 T1553 T1551 arg1Of sites,the
R1559 T1553 T1552 arg1Of sites,22
R1560 T1553 T1554 arg1Of sites,on
R1561 T1557 T1554 arg2Of protein,on
R1569 T1565 T1563 arg2Of glycans,of
R1570 T1565 T1564 arg1Of glycans,oligomannose-type
R1571 T1560 T1566 arg1Of contain,","
R1572 T1568 T1567 arg2Of how,highlighting
R1573 T1560 T1567 modOf contain,highlighting
R1574 T1576 T1568 arg1Of is,how
R1575 T1570 T1569 arg1Of processing,the
R1576 T1570 T1571 arg1Of processing,of
R1577 T1575 T1571 arg2Of glycans,of
R1578 T1575 T1572 arg1Of glycans,the
R1579 T1575 T1573 arg1Of glycans,SARS-CoV-2
R1580 T1575 T1574 arg1Of glycans,S
R1581 T1570 T1576 arg1Of processing,is
R1582 T1577 T1576 arg2Of divergent,is
R1583 T1570 T1577 arg1Of processing,divergent
R1584 T1577 T1578 arg1Of divergent,from
R1585 T1580 T1578 arg2Of glycoproteins,from
R1586 T1580 T1579 arg1Of glycoproteins,host
R1587 T1580 T1581 arg1Of glycoproteins,(
R1588 T1582 T1581 arg2Of 25,(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T51 25-32 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T52 181-194 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T72 25-32 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T73 89-96 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T74 150-157 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T75 181-194 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T35 137-147 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T64 0-200 Sentence denotes Of the 22 sites on the S protein, 8 contain substantial populations of oligomannose-type glycans, highlighting how the processing of the SARS-CoV-2 S glycans is divergent from host glycoproteins (25).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 137-147 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
306 148-149 Gene denotes S Gene:43740568
307 137-147 Species denotes SARS-CoV-2 Tax:2697049
310 71-83 Chemical denotes oligomannose
311 89-96 Chemical denotes glycans MESH:D011134
312 150-157 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1083 23-32 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1116 181-194 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T64 0-200 Sentence denotes Of the 22 sites on the S protein, 8 contain substantial populations of oligomannose-type glycans, highlighting how the processing of the SARS-CoV-2 S glycans is divergent from host glycoproteins (25).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
306 148-149 Gene denotes S Gene:43740568
307 137-147 Species denotes SARS-CoV-2 Tax:2697049
310 71-83 Chemical denotes oligomannose
311 89-96 Chemical denotes glycans MESH:D011134
312 150-157 Chemical denotes glycans MESH:D011134