PMC:7199903 / 8524-8916 JSONTXT

{"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":129,"end":136},"obj":"https://glytoucan.org/Structures/Glycans/G70323CJ"},{"id":"T2","span":{"begin":146,"end":165},"obj":"https://glytoucan.org/Structures/Glycans/G64581RP"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T47","span":{"begin":71,"end":78},"obj":"Body_part"},{"id":"T48","span":{"begin":129,"end":136},"obj":"Body_part"},{"id":"T49","span":{"begin":146,"end":165},"obj":"Body_part"},{"id":"T50","span":{"begin":376,"end":391},"obj":"Body_part"}],"attributes":[{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma82801"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma82787"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma63843"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T82","span":{"begin":71,"end":78},"obj":"Chemical"},{"id":"T83","span":{"begin":124,"end":127},"obj":"Chemical"},{"id":"T84","span":{"begin":129,"end":136},"obj":"Chemical"},{"id":"T85","span":{"begin":138,"end":144},"obj":"Chemical"},{"id":"T87","span":{"begin":146,"end":165},"obj":"Chemical"},{"id":"T89","span":{"begin":361,"end":368},"obj":"Chemical"}],"attributes":[{"id":"A82","pred":"chebi_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_506227"},{"id":"A86","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_73685"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_28009"},{"id":"A88","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_59640"},{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T43","span":{"begin":198,"end":203},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

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predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T46","span":{"begin":71,"end":78},"obj":"Body_part"},{"id":"T47","span":{"begin":129,"end":136},"obj":"Body_part"},{"id":"T48","span":{"begin":146,"end":165},"obj":"Body_part"},{"id":"T49","span":{"begin":376,"end":391},"obj":"Body_part"}],"attributes":[{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma82801"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma82787"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma63843"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T61","span":{"begin":71,"end":78},"obj":"Chemical"},{"id":"T62","span":{"begin":124,"end":127},"obj":"Chemical"},{"id":"T63","span":{"begin":129,"end":136},"obj":"Chemical"},{"id":"T64","span":{"begin":138,"end":144},"obj":"Chemical"},{"id":"T66","span":{"begin":146,"end":165},"obj":"Chemical"},{"id":"T68","span":{"begin":361,"end":368},"obj":"Chemical"}],"attributes":[{"id":"A61","pred":"chebi_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A62","pred":"chebi_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A63","pred":"chebi_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A64","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_506227"},{"id":"A65","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_73685"},{"id":"A66","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_28009"},{"id":"A67","pred":"chebi_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/CHEBI_59640"},{"id":"A68","pred":"chebi_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T60","span":{"begin":0,"end":392},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"276","span":{"begin":277,"end":286},"obj":"Gene"},{"id":"286","span":{"begin":16,"end":28},"obj":"Chemical"},{"id":"287","span":{"begin":34,"end":40},"obj":"Chemical"},{"id":"288","span":{"begin":111,"end":122},"obj":"Chemical"},{"id":"289","span":{"begin":124,"end":127},"obj":"Chemical"},{"id":"290","span":{"begin":129,"end":136},"obj":"Chemical"},{"id":"291","span":{"begin":138,"end":144},"obj":"Chemical"},{"id":"292","span":{"begin":146,"end":165},"obj":"Chemical"},{"id":"293","span":{"begin":361,"end":368},"obj":"Chemical"}],"attributes":[{"id":"A287","pred":"pubann:denotes","subj":"287","obj":"MESH:D011134"},{"id":"A288","pred":"pubann:denotes","subj":"288","obj":"MESH:C058642"},{"id":"A290","pred":"pubann:denotes","subj":"290","obj":"MESH:D008358"},{"id":"A276","pred":"pubann:denotes","subj":"276","obj":"Gene:4245"},{"id":"A291","pred":"pubann:denotes","subj":"291","obj":"MESH:D000117"},{"id":"A293","pred":"pubann:denotes","subj":"293","obj":"MESH:D011134"},{"id":"A292","pred":"pubann:denotes","subj":"292","obj":"MESH:D000117"},{"id":"A289","pred":"pubann:denotes","subj":"289","obj":"MESH:C058642"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T1079","span":{"begin":277,"end":286},"obj":"Protein"}],"attributes":[{"id":"A1079","pred":"uniprot_id","subj":"T1079","obj":"https://www.uniprot.org/uniprot/O17920"},{"id":"A1080","pred":"uniprot_id","subj":"T1079","obj":"https://www.uniprot.org/uniprot/O01705"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T31","span":{"begin":323,"end":332},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-GO-BP","denotations":[{"id":"T29","span":{"begin":323,"end":332},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T34","span":{"begin":323,"end":332},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sample-Glycan","denotations":[{"id":"T33","span":{"begin":124,"end":127},"obj":"https://glytoucan.org/Structures/Glycans/G70765DS"},{"id":"T34","span":{"begin":124,"end":127},"obj":"https://glytoucan.org/Structures/Glycans/G18477VG"},{"id":"T35","span":{"begin":124,"end":127},"obj":"https://glytoucan.org/Structures/Glycans/G72867LN"},{"id":"T36","span":{"begin":129,"end":136},"obj":"http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname"},{"id":"T37","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G26693XF"},{"id":"T38","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G01864SU"},{"id":"T39","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G85391SA"},{"id":"T40","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G41950LU"},{"id":"T41","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G57195RJ"},{"id":"T42","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G17605FD"},{"id":"T43","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G54644LT"},{"id":"T44","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G89565QL"},{"id":"T45","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G55978NL"},{"id":"T46","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G25126RB"},{"id":"T47","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G25694UG"},{"id":"T48","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G80869MR"},{"id":"T49","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G51848AD"},{"id":"T50","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G94667GM"},{"id":"T51","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G30124BO"},{"id":"T52","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G82777EZ"},{"id":"T53","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G10151YZ"},{"id":"T54","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G17585ZM"},{"id":"T55","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G38254HJ"},{"id":"T56","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G04411CJ"},{"id":"T57","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G70374VG"},{"id":"T58","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G30874VW"},{"id":"T59","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G45176LJ"},{"id":"T60","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G75188FS"},{"id":"T61","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G69333MI"},{"id":"T62","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G10676XO"},{"id":"T63","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G14843DJ"},{"id":"T64","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G47546FR"},{"id":"T65","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G73695ZM"},{"id":"T66","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G40745NH"},{"id":"T67","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G31923TJ"},{"id":"T68","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G60519EP"},{"id":"T69","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G07933IA"},{"id":"T70","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G54496YV"},{"id":"T71","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G70070AY"},{"id":"T72","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G62953SQ"},{"id":"T73","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G25238AV"},{"id":"T74","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G40510DP"},{"id":"T75","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G61120TK"},{"id":"T76","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G81830JX"},{"id":"T77","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G01591HR"},{"id":"T78","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G90703NA"},{"id":"T79","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G56520XN"},{"id":"T80","span":{"begin":138,"end":144},"obj":"https://glytoucan.org/Structures/Glycans/G41342KV"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-sentences","denotations":[{"id":"T60","span":{"begin":0,"end":392},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}

{"project":"LitCovid-PubTator","denotations":[{"id":"276","span":{"begin":277,"end":286},"obj":"Gene"},{"id":"286","span":{"begin":16,"end":28},"obj":"Chemical"},{"id":"287","span":{"begin":34,"end":40},"obj":"Chemical"},{"id":"288","span":{"begin":111,"end":122},"obj":"Chemical"},{"id":"289","span":{"begin":124,"end":127},"obj":"Chemical"},{"id":"290","span":{"begin":129,"end":136},"obj":"Chemical"},{"id":"291","span":{"begin":138,"end":144},"obj":"Chemical"},{"id":"292","span":{"begin":146,"end":165},"obj":"Chemical"},{"id":"293","span":{"begin":361,"end":368},"obj":"Chemical"}],"attributes":[{"id":"A276","pred":"tao:has_database_id","subj":"276","obj":"Gene:4245"},{"id":"A287","pred":"tao:has_database_id","subj":"287","obj":"MESH:D011134"},{"id":"A288","pred":"tao:has_database_id","subj":"288","obj":"MESH:C058642"},{"id":"A289","pred":"tao:has_database_id","subj":"289","obj":"MESH:C058642"},{"id":"A290","pred":"tao:has_database_id","subj":"290","obj":"MESH:D008358"},{"id":"A291","pred":"tao:has_database_id","subj":"291","obj":"MESH:D000117"},{"id":"A292","pred":"tao:has_database_id","subj":"292","obj":"MESH:D000117"},{"id":"A293","pred":"tao:has_database_id","subj":"293","obj":"MESH:D011134"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The predominant oligomannose-type glycan structure observed across the protein, with the exception of N234, is Man5GlcNAc2 (Man, mannose; GlcNAc, N-acetylglucosamine), which demonstrates that these sites are largely accessible to α-1,2-mannosidases but are poor substrates for GlcNAcT-I, which is the gateway enzyme in the formation of hybrid- and complex-type glycans in the Golgi apparatus."}