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PMC:7199903 / 7219-8447 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T46 632-634 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T34 638-641 Disease denotes FA4 http://purl.obolibrary.org/obo/MONDO_0009214
T35 732-735 Disease denotes pie http://purl.obolibrary.org/obo/MONDO_0000923

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T52 385-387 http://purl.obolibrary.org/obo/CLO_0007490 denotes M9
T53 884-891 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T54 1075-1077 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T55 1087-1089 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T56 1087-1089 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T74 162-169 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T75 339-346 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T76 385-387 Chemical denotes M9 http://purl.obolibrary.org/obo/CHEBI_140164
T77 482-489 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T78 541-548 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T79 781-788 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T80 790-796 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154
T81 1087-1089 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T36 303-308 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T37 699-703 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T38 797-802 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T39 878-883 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T40 983-987 http://purl.obolibrary.org/obo/BFO_0000029 denotes site
T41 1156-1166 http://purl.obolibrary.org/obo/IDO_0000608 denotes replicates

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1192 0-3 DT denotes The
T1193 4-13 JJ denotes schematic
T1194 14-25 VBZ denotes illustrates
T1195 26-29 DT denotes the
T1196 30-35 NN denotes color
T1197 36-40 NN denotes code
T1198 41-44 IN denotes for
T1199 45-48 DT denotes the
T1200 49-58 JJ denotes principal
T1201 59-65 NN denotes glycan
T1202 66-71 NNS denotes types
T1203 72-76 WDT denotes that
T1204 77-80 MD denotes can
T1205 81-86 VB denotes arise
T1206 87-92 IN denotes along
T1207 93-96 DT denotes the
T1208 97-107 NN denotes maturation
T1209 108-115 NN denotes pathway
T1210 116-120 IN denotes from
T1211 121-134 NN denotes oligomannose-
T1212 135-137 TO denotes to
T1213 138-145 NN denotes hybrid-
T1214 146-148 TO denotes to
T1215 149-161 JJ denotes complex-type
T1216 162-169 NNS denotes glycans
T1217 171-174 DT denotes The
T1218 175-181 NNS denotes graphs
T1219 182-191 VBP denotes summarize
T1220 192-204 JJ denotes quantitative
T1221 205-209 NN denotes mass
T1222 210-223 JJ denotes spectrometric
T1223 224-232 NN denotes analysis
T1224 233-235 IN denotes of
T1225 236-239 DT denotes the
T1226 240-246 NN denotes glycan
T1227 247-257 NN denotes population
T1228 258-265 JJ denotes present
T1229 266-268 IN denotes at
T1230 269-279 JJ denotes individual
T1231 280-288 JJ denotes N-linked
T1232 289-302 NN denotes glycosylation
T1233 303-308 NNS denotes sites
T1234 309-319 VBN denotes simplified
T1235 320-324 IN denotes into
T1236 325-335 NNS denotes categories
T1237 336-338 IN denotes of
T1238 339-346 NNS denotes glycans
T1239 348-351 DT denotes The
T1240 352-369 JJ denotes oligomannose-type
T1241 370-376 NN denotes glycan
T1242 377-383 NN denotes series
T1243 384-385 -LRB- denotes (
T1244 385-387 NN denotes M9
T1245 388-390 TO denotes to
T1246 391-393 NN denotes M5
T1247 393-394 -SEMICOLON- denotes ;
T1248 395-406 NN denotes Man9GlcNAc2
T1249 407-409 TO denotes to
T1250 410-421 NN denotes Man5GlcNAc2
T1251 421-422 -RRB- denotes )
T1252 423-425 VBZ denotes is
T1253 426-433 VBN denotes colored
T1254 434-439 JJ denotes green
T1255 439-440 -COMMA- denotes ,
T1256 441-453 VBN denotes afucosylated
T1257 454-457 CC denotes and
T1258 458-469 VBN denotes fucosylated
T1259 470-481 JJ denotes hybrid-type
T1260 482-489 NNS denotes glycans
T1261 490-491 -LRB- denotes (
T1262 491-497 NN denotes hybrid
T1263 498-501 CC denotes and
T1264 502-503 NN denotes F
T1265 504-510 NN denotes hybrid
T1266 510-511 -RRB- denotes )
T1267 512-515 VBP denotes are
T1268 516-522 VBN denotes dashed
T1269 523-527 NN denotes pink
T1270 527-528 -COMMA- denotes ,
T1271 529-532 CC denotes and
T1272 533-540 JJ denotes complex
T1273 541-548 NNS denotes glycans
T1274 549-552 VBP denotes are
T1275 553-560 VBN denotes grouped
T1276 561-570 VBG denotes according
T1277 571-573 TO denotes to
T1278 574-577 DT denotes the
T1279 578-584 NN denotes number
T1280 585-587 IN denotes of
T1281 588-596 NNS denotes antennae
T1282 597-600 CC denotes and
T1283 601-609 NN denotes presence
T1284 610-612 IN denotes of
T1285 613-617 NN denotes core
T1286 618-630 NN denotes fucosylation
T1287 631-632 -LRB- denotes (
T1288 632-634 NN denotes A1
T1289 635-637 TO denotes to
T1290 638-641 NN denotes FA4
T1291 641-642 -RRB- denotes )
T1292 643-646 CC denotes and
T1293 647-650 VBP denotes are
T1294 651-658 VBN denotes colored
T1295 659-663 NN denotes pink
T1296 665-676 NN denotes Unoccupancy
T1297 677-679 IN denotes of
T1298 680-682 DT denotes an
T1299 683-691 JJ denotes N-linked
T1300 692-698 NN denotes glycan
T1301 699-703 NN denotes site
T1302 704-706 VBZ denotes is
T1303 707-718 VBN denotes represented
T1304 719-721 IN denotes in
T1305 722-726 NN denotes gray
T1306 728-731 DT denotes The
T1307 732-735 NN denotes pie
T1308 736-742 NNS denotes charts
T1309 743-752 VBP denotes summarize
T1310 753-756 DT denotes the
T1311 757-771 NN denotes quantification
T1312 772-774 IN denotes of
T1313 775-780 DT denotes these
T1314 781-788 NNS denotes glycans
T1315 790-796 NN denotes Glycan
T1316 797-802 NNS denotes sites
T1317 803-806 VBP denotes are
T1318 807-814 VBN denotes colored
T1319 815-824 VBG denotes according
T1320 825-827 TO denotes to
T1321 828-845 JJ denotes oligomannose-type
T1322 846-852 NN denotes glycan
T1323 853-860 NN denotes content
T1324 860-861 -COMMA- denotes ,
T1325 862-866 IN denotes with
T1326 867-870 DT denotes the
T1327 871-877 NN denotes glycan
T1328 878-883 NNS denotes sites
T1329 884-891 VBN denotes labeled
T1330 892-894 IN denotes in
T1331 895-900 JJ denotes green
T1332 901-902 -LRB- denotes (
T1333 902-904 CD denotes 80
T1334 905-907 TO denotes to
T1335 908-911 CD denotes 100
T1336 911-912 NN denotes %
T1337 912-913 -RRB- denotes )
T1338 913-914 -COMMA- denotes ,
T1339 915-921 NN denotes orange
T1340 922-923 -LRB- denotes (
T1341 923-925 CD denotes 30
T1342 926-928 TO denotes to
T1343 929-931 CD denotes 79
T1344 931-932 NN denotes %
T1345 932-933 -RRB- denotes )
T1346 933-934 -COMMA- denotes ,
T1347 935-938 CC denotes and
T1348 939-943 NN denotes pink
T1349 944-945 -LRB- denotes (
T1350 945-946 CD denotes 0
T1351 947-949 TO denotes to
T1352 950-952 CD denotes 29
T1353 952-953 NN denotes %
T1354 953-954 -RRB- denotes )
T1355 956-958 DT denotes An
T1356 959-967 VBN denotes extended
T1357 968-975 NN denotes version
T1358 976-978 IN denotes of
T1359 979-982 DT denotes the
T1360 983-996 JJ denotes site-specific
T1361 997-1005 NN denotes analysis
T1362 1006-1013 VBG denotes showing
T1363 1014-1017 DT denotes the
T1364 1018-1031 NN denotes heterogeneity
T1365 1032-1038 IN denotes within
T1366 1039-1043 DT denotes each
T1367 1044-1052 NN denotes category
T1368 1053-1056 MD denotes can
T1369 1057-1059 VB denotes be
T1370 1060-1065 VBN denotes found
T1371 1066-1068 IN denotes in
T1372 1069-1074 NN denotes table
T1373 1075-1077 NN denotes S1
T1374 1078-1081 CC denotes and
T1375 1082-1085 NN denotes fig
T1376 1087-1089 NN denotes S2
T1377 1091-1094 DT denotes The
T1378 1095-1098 NN denotes bar
T1379 1099-1105 NNS denotes graphs
T1380 1106-1115 VBP denotes represent
T1381 1116-1119 DT denotes the
T1382 1120-1124 JJ denotes mean
T1383 1125-1135 NNS denotes quantities
T1384 1136-1138 IN denotes of
T1385 1139-1144 CD denotes three
T1386 1145-1155 JJ denotes biological
T1387 1156-1166 NNS denotes replicates
T1388 1166-1167 -COMMA- denotes ,
T1389 1168-1172 IN denotes with
T1390 1173-1178 NN denotes error
T1391 1179-1183 NNS denotes bars
T1392 1184-1196 VBG denotes representing
T1393 1197-1200 DT denotes the
T1394 1201-1209 JJ denotes standard
T1395 1210-1215 NN denotes error
T1396 1216-1218 IN denotes of
T1397 1219-1222 DT denotes the
T1398 1223-1227 NN denotes mean
R1193 T1193 T1192 arg1Of schematic,The
R1194 T1193 T1194 arg1Of schematic,illustrates
R1195 T1197 T1194 arg2Of code,illustrates
R1196 T1197 T1195 arg1Of code,the
R1197 T1197 T1196 arg1Of code,color
R1198 T1197 T1198 arg1Of code,for
R1199 T1202 T1198 arg2Of types,for
R1200 T1202 T1199 arg1Of types,the
R1201 T1202 T1200 arg1Of types,principal
R1202 T1202 T1201 arg1Of types,glycan
R1203 T1202 T1203 arg1Of types,that
R1204 T1202 T1204 arg1Of types,can
R1205 T1205 T1204 arg2Of arise,can
R1206 T1202 T1205 arg1Of types,arise
R1207 T1205 T1206 arg1Of arise,along
R1208 T1209 T1206 arg2Of pathway,along
R1209 T1209 T1207 arg1Of pathway,the
R1210 T1209 T1208 arg1Of pathway,maturation
R1211 T1209 T1210 arg1Of pathway,from
R1212 T1211 T1210 arg2Of oligomannose-,from
R1232 T1233 T1231 arg1Of sites,N-linked
R1233 T1233 T1232 arg1Of sites,glycosylation
R1234 T1233 T1234 arg2Of sites,simplified
R1235 T1234 T1235 arg1Of simplified,into
R1236 T1236 T1235 arg2Of categories,into
R1237 T1236 T1237 arg1Of categories,of
R1238 T1238 T1237 arg2Of glycans,of
R1239 T1242 T1239 arg1Of series,The
R1240 T1242 T1240 arg1Of series,oligomannose-type
R1241 T1242 T1241 arg1Of series,glycan
R1242 T1242 T1243 arg1Of series,(
R1300 T1295 T1294 arg3Of pink,colored
R1301 T1296 T1297 arg1Of Unoccupancy,of
R1302 T1301 T1297 arg2Of site,of
R1365 T1361 T1362 arg1Of analysis,showing
R1366 T1364 T1362 arg2Of heterogeneity,showing
R1367 T1364 T1363 arg1Of heterogeneity,the
R1368 T1364 T1365 arg1Of heterogeneity,within
R1369 T1367 T1365 arg2Of category,within
R1370 T1367 T1366 arg1Of category,each
R1371 T1357 T1368 arg1Of version,can
R1372 T1370 T1368 arg2Of found,can
R1394 T1392 T1389 arg3Of representing,with
R1213 T1197 T1212 arg1Of code,to
R1214 T1213 T1212 arg2Of hybrid-,to
R1215 T1213 T1214 arg1Of hybrid-,to
R1216 T1216 T1214 arg2Of glycans,to
R1217 T1216 T1215 arg1Of glycans,complex-type
R1218 T1218 T1217 arg1Of graphs,The
R1219 T1218 T1219 arg1Of graphs,summarize
R1220 T1223 T1219 arg2Of analysis,summarize
R1221 T1223 T1220 arg1Of analysis,quantitative
R1222 T1223 T1221 arg1Of analysis,mass
R1223 T1223 T1222 arg1Of analysis,spectrometric
R1224 T1223 T1224 arg1Of analysis,of
R1225 T1227 T1224 arg2Of population,of
R1226 T1227 T1225 arg1Of population,the
R1227 T1227 T1226 arg1Of population,glycan
R1228 T1227 T1228 arg1Of population,present
R1229 T1228 T1229 arg1Of present,at
R1230 T1233 T1229 arg2Of sites,at
R1231 T1233 T1230 arg1Of sites,individual
R1243 T1244 T1243 arg2Of M9,(
R1244 T1251 T1243 arg3Of ),(
R1245 T1244 T1245 arg1Of M9,to
R1246 T1246 T1245 arg2Of M5,to
R1247 T1244 T1247 arg1Of M9,;
R1248 T1248 T1247 arg2Of Man9GlcNAc2,;
R1249 T1248 T1249 arg1Of Man9GlcNAc2,to
R1250 T1250 T1249 arg2Of Man5GlcNAc2,to
R1251 T1242 T1252 arg1Of series,is
R1252 T1253 T1252 arg2Of colored,is
R1253 T1242 T1253 arg2Of series,colored
R1254 T1254 T1253 arg3Of green,colored
R1255 T1242 T1254 arg1Of series,green
R1256 T1253 T1255 arg1Of colored,","
R1257 T1268 T1255 arg2Of dashed,","
R1258 T1260 T1256 arg1Of glycans,afucosylated
R1259 T1258 T1257 arg1Of fucosylated,and
R1260 T1260 T1258 arg1Of glycans,fucosylated
R1261 T1260 T1259 arg1Of glycans,hybrid-type
R1262 T1260 T1261 arg1Of glycans,(
R1263 T1263 T1261 arg2Of and,(
R1264 T1266 T1261 arg3Of ),(
R1265 T1262 T1263 arg1Of hybrid,and
R1266 T1265 T1263 arg2Of hybrid,and
R1267 T1265 T1264 arg1Of hybrid,F
R1268 T1260 T1267 arg1Of glycans,are
R1269 T1268 T1267 arg2Of dashed,are
R1270 T1260 T1268 arg2Of glycans,dashed
R1271 T1269 T1268 arg3Of pink,dashed
R1272 T1271 T1270 arg1Of and,","
R1273 T1255 T1271 arg1Of ",",and
R1274 T1292 T1271 arg2Of and,and
R1275 T1273 T1272 arg1Of glycans,complex
R1276 T1273 T1274 arg1Of glycans,are
R1277 T1275 T1274 arg2Of grouped,are
R1278 T1273 T1275 arg2Of glycans,grouped
R1279 T1275 T1276 arg1Of grouped,according
R1280 T1277 T1276 arg2Of to,according
R1281 T1279 T1277 arg2Of number,to
R1282 T1279 T1278 arg1Of number,the
R1283 T1279 T1280 arg1Of number,of
R1284 T1282 T1280 arg2Of and,of
R1285 T1281 T1282 arg1Of antennae,and
R1286 T1283 T1282 arg2Of presence,and
R1287 T1283 T1284 arg1Of presence,of
R1288 T1286 T1284 arg2Of fucosylation,of
R1289 T1286 T1285 arg1Of fucosylation,core
R1290 T1286 T1287 arg1Of fucosylation,(
R1291 T1288 T1287 arg2Of A1,(
R1292 T1291 T1287 arg3Of ),(
R1293 T1288 T1289 arg1Of A1,to
R1294 T1290 T1289 arg2Of FA4,to
R1295 T1275 T1292 arg1Of grouped,and
R1296 T1294 T1292 arg2Of colored,and
R1297 T1273 T1293 arg1Of glycans,are
R1298 T1294 T1293 arg2Of colored,are
R1299 T1273 T1294 arg2Of glycans,colored
R1303 T1301 T1298 arg1Of site,an
R1304 T1301 T1299 arg1Of site,N-linked
R1305 T1301 T1300 arg1Of site,glycan
R1306 T1296 T1302 arg1Of Unoccupancy,is
R1307 T1303 T1302 arg2Of represented,is
R1308 T1296 T1303 arg2Of Unoccupancy,represented
R1309 T1303 T1304 arg1Of represented,in
R1310 T1305 T1304 arg2Of gray,in
R1311 T1308 T1306 arg1Of charts,The
R1312 T1308 T1307 arg1Of charts,pie
R1313 T1308 T1309 arg1Of charts,summarize
R1314 T1311 T1309 arg2Of quantification,summarize
R1315 T1311 T1310 arg1Of quantification,the
R1316 T1311 T1312 arg1Of quantification,of
R1317 T1314 T1312 arg2Of glycans,of
R1318 T1314 T1313 arg1Of glycans,these
R1319 T1316 T1315 arg1Of sites,Glycan
R1320 T1316 T1317 arg1Of sites,are
R1321 T1318 T1317 arg2Of colored,are
R1322 T1316 T1318 arg2Of sites,colored
R1323 T1347 T1318 arg3Of and,colored
R1324 T1318 T1319 arg1Of colored,according
R1325 T1320 T1319 arg2Of to,according
R1326 T1323 T1320 arg2Of content,to
R1327 T1323 T1321 arg1Of content,oligomannose-type
R1328 T1323 T1322 arg1Of content,glycan
R1329 T1318 T1324 arg1Of colored,","
R1330 T1318 T1325 arg1Of colored,with
R1331 T1328 T1325 arg2Of sites,with
R1332 T1328 T1326 arg1Of sites,the
R1333 T1328 T1327 arg1Of sites,glycan
R1334 T1328 T1329 arg2Of sites,labeled
R1335 T1329 T1330 arg1Of labeled,in
R1336 T1331 T1330 arg2Of green,in
R1337 T1331 T1332 arg1Of green,(
R1338 T1336 T1332 arg2Of %,(
R1339 T1337 T1332 arg3Of ),(
R1340 T1336 T1333 arg1Of %,80
R1341 T1333 T1334 arg1Of 80,to
R1342 T1335 T1334 arg2Of 100,to
R1343 T1318 T1338 arg1Of colored,","
R1344 T1339 T1340 arg1Of orange,(
R1345 T1344 T1340 arg2Of %,(
R1346 T1345 T1340 arg3Of ),(
R1347 T1344 T1341 arg1Of %,30
R1348 T1341 T1342 arg1Of 30,to
R1349 T1343 T1342 arg2Of 79,to
R1350 T1347 T1346 arg1Of and,","
R1351 T1339 T1347 arg1Of orange,and
R1352 T1348 T1347 arg2Of pink,and
R1353 T1348 T1349 arg1Of pink,(
R1354 T1353 T1349 arg2Of %,(
R1355 T1354 T1349 arg3Of ),(
R1356 T1353 T1350 arg1Of %,0
R1357 T1350 T1351 arg1Of 0,to
R1358 T1352 T1351 arg2Of 29,to
R1359 T1357 T1355 arg1Of version,An
R1360 T1357 T1356 arg2Of version,extended
R1361 T1357 T1358 arg1Of version,of
R1362 T1361 T1358 arg2Of analysis,of
R1363 T1361 T1359 arg1Of analysis,the
R1364 T1361 T1360 arg1Of analysis,site-specific
R1373 T1357 T1369 arg1Of version,be
R1374 T1370 T1369 arg2Of found,be
R1375 T1357 T1370 arg2Of version,found
R1376 T1370 T1371 arg1Of found,in
R1377 T1374 T1371 arg2Of and,in
R1378 T1374 T1372 arg1Of and,table
R1379 T1373 T1374 arg1Of S1,and
R1380 T1375 T1374 arg2Of fig,and
R1381 T1379 T1377 arg1Of graphs,The
R1382 T1379 T1378 arg1Of graphs,bar
R1383 T1379 T1380 arg1Of graphs,represent
R1384 T1383 T1380 arg2Of quantities,represent
R1385 T1383 T1381 arg1Of quantities,the
R1386 T1383 T1382 arg1Of quantities,mean
R1387 T1383 T1384 arg1Of quantities,of
R1388 T1387 T1384 arg2Of replicates,of
R1389 T1387 T1385 arg1Of replicates,three
R1390 T1387 T1386 arg1Of replicates,biological
R1391 T1380 T1388 arg1Of represent,","
R1392 T1380 T1389 arg1Of represent,with
R1393 T1391 T1389 arg2Of bars,with
R1395 T1391 T1390 arg1Of bars,error
R1396 T1391 T1392 arg1Of bars,representing
R1397 T1395 T1392 arg2Of error,representing
R1398 T1395 T1393 arg1Of error,the
R1399 T1395 T1394 arg1Of error,standard
R1400 T1395 T1396 arg1Of error,of
R1401 T1398 T1396 arg2Of mean,of
R1402 T1398 T1397 arg1Of mean,the

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T55 162-169 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T56 339-346 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T57 482-489 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T58 541-548 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T59 781-788 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T60 790-796 Chemical denotes Glycan http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T51 0-170 Sentence denotes The schematic illustrates the color code for the principal glycan types that can arise along the maturation pathway from oligomannose- to hybrid- to complex-type glycans.
T52 171-347 Sentence denotes The graphs summarize quantitative mass spectrometric analysis of the glycan population present at individual N-linked glycosylation sites simplified into categories of glycans.
T53 348-664 Sentence denotes The oligomannose-type glycan series (M9 to M5; Man9GlcNAc2 to Man5GlcNAc2) is colored green, afucosylated and fucosylated hybrid-type glycans (hybrid and F hybrid) are dashed pink, and complex glycans are grouped according to the number of antennae and presence of core fucosylation (A1 to FA4) and are colored pink.
T54 665-727 Sentence denotes Unoccupancy of an N-linked glycan site is represented in gray.
T55 728-789 Sentence denotes The pie charts summarize the quantification of these glycans.
T56 790-955 Sentence denotes Glycan sites are colored according to oligomannose-type glycan content, with the glycan sites labeled in green (80 to 100%), orange (30 to 79%), and pink (0 to 29%).
T57 956-1090 Sentence denotes An extended version of the site-specific analysis showing the heterogeneity within each category can be found in table S1 and fig. S2.
T58 1091-1228 Sentence denotes The bar graphs represent the mean quantities of three biological replicates, with error bars representing the standard error of the mean.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
237 638-641 Gene denotes FA4 Gene:2177
238 59-65 Chemical denotes glycan MESH:D011134
239 121-133 Chemical denotes oligomannose
240 162-169 Chemical denotes glycans MESH:D011134
241 240-246 Chemical denotes glycan MESH:D011134
242 280-281 Chemical denotes N MESH:D009584
243 339-346 Chemical denotes glycans MESH:D011134
244 352-364 Chemical denotes oligomannose
245 370-376 Chemical denotes glycan MESH:D011134
246 395-406 Chemical denotes Man9GlcNAc2 MESH:C475461
247 410-421 Chemical denotes Man5GlcNAc2 MESH:C058642
248 482-489 Chemical denotes glycans MESH:D011134
249 541-548 Chemical denotes glycans MESH:D011134
250 683-698 Chemical denotes N-linked glycan
251 781-788 Chemical denotes glycans MESH:D011134
252 790-796 Chemical denotes Glycan MESH:D011134
253 828-840 Chemical denotes oligomannose
254 846-852 Chemical denotes glycan MESH:D011134
255 871-877 Chemical denotes glycan MESH:D011134

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T2 588-596 http://purl.obolibrary.org/obo/MAT_0000086 denotes antennae

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T29 289-302 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T30 618-630 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T27 289-302 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T28 618-630 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T31 280-302 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T32 289-302 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T33 618-630 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T51 0-170 Sentence denotes The schematic illustrates the color code for the principal glycan types that can arise along the maturation pathway from oligomannose- to hybrid- to complex-type glycans.
T52 171-347 Sentence denotes The graphs summarize quantitative mass spectrometric analysis of the glycan population present at individual N-linked glycosylation sites simplified into categories of glycans.
T53 348-664 Sentence denotes The oligomannose-type glycan series (M9 to M5; Man9GlcNAc2 to Man5GlcNAc2) is colored green, afucosylated and fucosylated hybrid-type glycans (hybrid and F hybrid) are dashed pink, and complex glycans are grouped according to the number of antennae and presence of core fucosylation (A1 to FA4) and are colored pink.
T54 665-727 Sentence denotes Unoccupancy of an N-linked glycan site is represented in gray.
T55 728-789 Sentence denotes The pie charts summarize the quantification of these glycans.
T56 790-955 Sentence denotes Glycan sites are colored according to oligomannose-type glycan content, with the glycan sites labeled in green (80 to 100%), orange (30 to 79%), and pink (0 to 29%).
T57 956-1090 Sentence denotes An extended version of the site-specific analysis showing the heterogeneity within each category can be found in table S1 and fig. S2.
T58 1091-1228 Sentence denotes The bar graphs represent the mean quantities of three biological replicates, with error bars representing the standard error of the mean.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
237 638-641 Gene denotes FA4 Gene:2177
238 59-65 Chemical denotes glycan MESH:D011134
239 121-133 Chemical denotes oligomannose
240 162-169 Chemical denotes glycans MESH:D011134
241 240-246 Chemical denotes glycan MESH:D011134
242 280-281 Chemical denotes N MESH:D009584
243 339-346 Chemical denotes glycans MESH:D011134
244 352-364 Chemical denotes oligomannose
245 370-376 Chemical denotes glycan MESH:D011134
246 395-406 Chemical denotes Man9GlcNAc2 MESH:C475461
247 410-421 Chemical denotes Man5GlcNAc2 MESH:C058642
248 482-489 Chemical denotes glycans MESH:D011134
249 541-548 Chemical denotes glycans MESH:D011134
250 683-698 Chemical denotes N-linked glycan
251 781-788 Chemical denotes glycans MESH:D011134
252 790-796 Chemical denotes Glycan MESH:D011134
253 828-840 Chemical denotes oligomannose
254 846-852 Chemical denotes glycan MESH:D011134
255 871-877 Chemical denotes glycan MESH:D011134