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PMC:7199903 / 6203-6389 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T40 38-45 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 77-84 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 25-33 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T67 38-45 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 77-84 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1037 0-2 NN denotes 2D
T1038 3-8 NN denotes class
T1039 9-17 NNS denotes averages
T1040 18-20 IN denotes of
T1041 21-24 DT denotes the
T1042 25-35 NN denotes SARS-CoV-2
T1043 36-37 NN denotes S
T1044 38-45 NN denotes protein
T1045 46-49 VBP denotes are
T1046 50-55 VBN denotes shown
T1047 55-56 -COMMA- denotes ,
T1048 57-67 VBG denotes confirming
T1049 68-72 IN denotes that
T1050 73-76 DT denotes the
T1051 77-84 NN denotes protein
T1052 85-91 VBZ denotes adopts
T1053 92-95 DT denotes the
T1054 96-104 JJ denotes trimeric
T1055 105-114 NN denotes prefusion
T1056 115-127 NN denotes conformation
T1057 128-136 VBG denotes matching
T1058 137-140 DT denotes the
T1059 141-149 NN denotes material
T1060 150-154 VBN denotes used
T1061 155-157 TO denotes to
T1062 158-167 VB denotes determine
T1063 168-171 DT denotes the
T1064 172-181 NN denotes structure
T1065 182-183 -LRB- denotes (
T1066 183-184 CD denotes 4
T1067 184-185 -RRB- denotes )
R1056 T1056 T1052 arg2Of conformation,adopts
R1039 T1039 T1037 arg1Of averages,2D
R1040 T1039 T1038 arg1Of averages,class
R1041 T1039 T1040 arg1Of averages,of
R1042 T1044 T1040 arg2Of protein,of
R1043 T1044 T1041 arg1Of protein,the
R1044 T1044 T1042 arg1Of protein,SARS-CoV-2
R1045 T1044 T1043 arg1Of protein,S
R1046 T1039 T1045 arg1Of averages,are
R1047 T1046 T1045 arg2Of shown,are
R1048 T1039 T1046 arg2Of averages,shown
R1049 T1048 T1046 arg3Of confirming,shown
R1050 T1046 T1047 arg1Of shown,","
R1051 T1039 T1048 arg1Of averages,confirming
R1052 T1052 T1048 arg2Of adopts,confirming
R1053 T1052 T1049 arg1Of adopts,that
R1054 T1051 T1050 arg1Of protein,the
R1055 T1051 T1052 arg1Of protein,adopts
R1057 T1056 T1053 arg1Of conformation,the
R1058 T1056 T1054 arg1Of conformation,trimeric
R1059 T1056 T1055 arg1Of conformation,prefusion
R1060 T1056 T1057 arg1Of conformation,matching
R1061 T1059 T1057 arg2Of material,matching
R1062 T1059 T1058 arg1Of material,the
R1063 T1059 T1060 arg2Of material,used
R1064 T1062 T1060 arg3Of determine,used
R1065 T1062 T1061 arg1Of determine,to
R1066 T1059 T1062 arg1Of material,determine
R1067 T1064 T1062 arg2Of structure,determine
R1068 T1064 T1063 arg1Of structure,the
R1069 T1064 T1065 arg1Of structure,(
R1070 T1066 T1065 arg2Of 4,(
R1071 T1067 T1065 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T40 38-45 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 77-84 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T49 38-45 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 77-84 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T28 25-35 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T44 0-186 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 25-35 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
171 36-45 Gene denotes S protein Gene:43740568
181 25-35 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T687 36-45 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-186 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 36-45 Gene denotes S protein Gene:43740568
181 25-35 Species denotes SARS-CoV-2 Tax:2697049