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PMC:7199903 / 6175-6340 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T39 19-26 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 66-73 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 105-112 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T30 6-14 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 53-61 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T66 19-26 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T67 66-73 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 105-112 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1033 2-5 DT denotes the
T1034 6-16 NN denotes SARS-CoV-2
T1035 17-18 NN denotes S
T1036 19-26 NN denotes protein
T1037 28-30 NN denotes 2D
T1038 31-36 NN denotes class
T1039 37-45 NNS denotes averages
T1040 46-48 IN denotes of
T1041 49-52 DT denotes the
T1042 53-63 NN denotes SARS-CoV-2
T1043 64-65 NN denotes S
T1044 66-73 NN denotes protein
T1045 74-77 VBP denotes are
T1046 78-83 VBN denotes shown
T1047 83-84 -COMMA- denotes ,
T1048 85-95 VBG denotes confirming
T1049 96-100 IN denotes that
T1050 101-104 DT denotes the
T1051 105-112 NN denotes protein
T1052 113-119 VBZ denotes adopts
T1053 120-123 DT denotes the
T1054 124-132 JJ denotes trimeric
T1055 133-142 NN denotes prefusion
T1056 143-155 NN denotes conformation
T1057 156-164 VBG denotes matching
R1056 T1056 T1052 arg2Of conformation,adopts
R1036 T1036 T1033 arg1Of protein,the
R1037 T1036 T1034 arg1Of protein,SARS-CoV-2
R1038 T1036 T1035 arg1Of protein,S
R1039 T1039 T1037 arg1Of averages,2D
R1040 T1039 T1038 arg1Of averages,class
R1041 T1039 T1040 arg1Of averages,of
R1042 T1044 T1040 arg2Of protein,of
R1043 T1044 T1041 arg1Of protein,the
R1044 T1044 T1042 arg1Of protein,SARS-CoV-2
R1045 T1044 T1043 arg1Of protein,S
R1046 T1039 T1045 arg1Of averages,are
R1047 T1046 T1045 arg2Of shown,are
R1048 T1039 T1046 arg2Of averages,shown
R1049 T1048 T1046 arg3Of confirming,shown
R1050 T1046 T1047 arg1Of shown,","
R1051 T1039 T1048 arg1Of averages,confirming
R1052 T1052 T1048 arg2Of adopts,confirming
R1053 T1052 T1049 arg1Of adopts,that
R1054 T1051 T1050 arg1Of protein,the
R1055 T1051 T1052 arg1Of protein,adopts
R1057 T1056 T1053 arg1Of conformation,the
R1058 T1056 T1054 arg1Of conformation,trimeric
R1059 T1056 T1055 arg1Of conformation,prefusion
R1060 T1056 T1057 arg1Of conformation,matching

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T39 19-26 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 66-73 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 105-112 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T48 19-26 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 66-73 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 105-112 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T27 6-16 Species denotes SARS-CoV-2 NCBItxid:2697049
T28 53-63 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 6-16 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T27 53-63 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
171 64-73 Gene denotes S protein Gene:43740568
172 17-26 Gene denotes S protein Gene:43740568
180 6-16 Species denotes SARS-CoV-2 Tax:2697049
181 53-63 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T654 17-26 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T687 64-73 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 64-73 Gene denotes S protein Gene:43740568
172 17-26 Gene denotes S protein Gene:43740568
180 6-16 Species denotes SARS-CoV-2 Tax:2697049
181 53-63 Species denotes SARS-CoV-2 Tax:2697049