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PMC:7199903 / 58-271 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 14-21 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 152-159 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 58-105 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 58-91 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 107-115 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 175-184 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 119-129 http://purl.obolibrary.org/obo/CLO_0009985 denotes is focused

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 14-21 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 152-159 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T2 175-184 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T14 54-57 IN denotes for
T15 58-64 JJ denotes severe
T16 65-70 JJ denotes acute
T17 71-82 JJ denotes respiratory
T18 83-91 NN denotes syndrome
T19 92-103 NN denotes coronavirus
T20 104-105 CD denotes 2
T21 106-107 -LRB- denotes (
T8 8-13 NN denotes spike
T9 14-21 NN denotes protein
T10 21-22 -COMMA- denotes ,
T11 23-33 VBD denotes elaborated
T12 34-41 NN denotes Vaccine
T13 42-53 NN denotes development
T22 107-117 NN denotes SARS-CoV-2
T23 117-118 -RRB- denotes )
T24 119-121 VBZ denotes is
T25 122-129 VBN denotes focused
T26 130-132 IN denotes on
T27 133-136 DT denotes the
T28 137-145 JJ denotes trimeric
T29 146-151 NN denotes spike
T30 152-159 NN denotes protein
T31 160-164 WDT denotes that
T32 165-174 VBZ denotes initiates
T33 175-184 NN denotes infection
T34 186-190 DT denotes Each
T35 191-199 NN denotes protomer
T36 200-202 IN denotes in
T37 203-206 DT denotes the
R7 T9 T8 arg1Of protein,spike
R21 T13 T24 arg1Of development,is
R22 T25 T24 arg2Of focused,is
R23 T13 T25 arg2Of development,focused
R24 T25 T26 arg1Of focused,on
R25 T30 T26 arg2Of protein,on
R26 T30 T27 arg1Of protein,the
R27 T30 T28 arg1Of protein,trimeric
R28 T30 T29 arg1Of protein,spike
R29 T30 T31 arg1Of protein,that
R8 T11 T10 arg1Of elaborated,","
R9 T9 T11 arg1Of protein,elaborated
R10 T13 T12 arg1Of development,Vaccine
R11 T13 T14 arg1Of development,for
R12 T19 T14 arg2Of coronavirus,for
R13 T19 T15 arg1Of coronavirus,severe
R14 T19 T16 arg1Of coronavirus,acute
R15 T19 T17 arg1Of coronavirus,respiratory
R16 T19 T18 arg1Of coronavirus,syndrome
R17 T19 T20 arg1Of coronavirus,2
R18 T19 T21 arg1Of coronavirus,(
R19 T22 T21 arg2Of SARS-CoV-2,(
R20 T23 T21 arg3Of ),(
R30 T30 T32 arg1Of protein,initiates
R31 T33 T32 arg2Of infection,initiates
R32 T35 T34 arg1Of protomer,Each
R33 T35 T36 arg1Of protomer,in

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 14-21 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 152-159 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 14-21 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 152-159 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T3 58-105 Species denotes severe acute respiratory syndrome coronavirus 2 NCBItxid:2697049
T4 107-117 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T3 34-185 Sentence denotes Vaccine development for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on the trimeric spike protein that initiates infection.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 58-105 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 107-117 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 175-184 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
17 146-151 Gene denotes spike Gene:43740568
19 58-105 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
20 107-117 Species denotes SARS-CoV-2 Tax:2697049
25 175-184 Disease denotes infection MESH:D007239
6 8-13 Gene denotes spike Gene:43740568

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1 8-21 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T2 146-159 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 34-185 Sentence denotes Vaccine development for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on the trimeric spike protein that initiates infection.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
6 8-13 Gene denotes spike Gene:43740568
17 146-151 Gene denotes spike Gene:43740568
19 58-105 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
20 107-117 Species denotes SARS-CoV-2 Tax:2697049
25 175-184 Disease denotes infection MESH:D007239