> top > docs > PMC:7199903 > spans > 5589-5958 > annotations

PMC:7199903 / 5589-5958 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 0-7 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 141-146 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 279-286 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 345-351 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 363-368 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 141-146 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 345-351 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 52-55 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T29 266-274 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 96-103 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T42 208-209 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T43 329-334 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 335-351 http://www.ebi.ac.uk/efo/EFO_0000927 denotes embryonic kidney
T45 358-368 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T54 0-7 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T55 96-103 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T56 105-107 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T57 171-173 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T58 202-204 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T60 211-214 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T61 215-229 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T64 279-286 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T30 363-368 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T915 0-7 NN denotes Protein
T916 8-15 NNS denotes domains
T917 16-19 VBP denotes are
T918 20-31 VBN denotes illustrated
T919 31-32 -COLON- denotes :
T920 33-43 JJ denotes N-terminal
T921 44-50 NN denotes domain
T922 51-52 -LRB- denotes (
T923 52-55 NN denotes NTD
T924 55-56 -RRB- denotes )
T925 56-57 -COMMA- denotes ,
T926 58-66 NN denotes receptor
T927 67-74 NN denotes binding
T928 75-81 NN denotes domain
T929 82-83 -LRB- denotes (
T930 83-86 NN denotes RBD
T931 86-87 -RRB- denotes )
T932 87-88 -COMMA- denotes ,
T933 89-95 NN denotes fusion
T934 96-103 NN denotes peptide
T935 104-105 -LRB- denotes (
T936 105-107 NN denotes FP
T937 107-108 -RRB- denotes )
T938 108-109 -COMMA- denotes ,
T939 110-116 NN denotes heptad
T940 117-123 NN denotes repeat
T941 124-125 CD denotes 1
T942 126-127 -LRB- denotes (
T943 127-130 NN denotes HR1
T944 130-131 -RRB- denotes )
T945 131-132 -COMMA- denotes ,
T946 133-140 JJ denotes central
T947 141-146 NN denotes helix
T948 147-148 -LRB- denotes (
T949 148-150 NN denotes CH
T950 150-151 -RRB- denotes )
T951 151-152 -COMMA- denotes ,
T952 153-162 NN denotes connector
T953 163-169 NN denotes domain
T954 170-171 -LRB- denotes (
T955 171-173 NN denotes CD
T956 173-174 -RRB- denotes )
T957 174-175 -COMMA- denotes ,
T958 176-179 CC denotes and
T959 180-193 JJ denotes transmembrane
T960 194-200 NN denotes domain
T961 201-202 -LRB- denotes (
T962 202-204 NN denotes TM
T963 204-205 -RRB- denotes )
T964 207-208 -LRB- denotes (
T965 208-209 NN denotes B
T966 209-210 -RRB- denotes )
T967 211-229 NN denotes SDS–polyacrylamide
T968 230-233 NN denotes gel
T969 234-249 NN denotes electrophoresis
T970 250-258 NN denotes analysis
T971 259-261 IN denotes of
T972 262-265 DT denotes the
T973 266-276 NN denotes SARS-CoV-2
T974 277-278 NN denotes S
T975 279-286 NN denotes protein
T976 287-288 -LRB- denotes (
T977 288-297 VBN denotes indicated
T978 298-300 IN denotes by
T979 301-304 DT denotes the
T980 305-314 NN denotes arrowhead
T981 314-315 -RRB- denotes )
T982 316-325 VBN denotes expressed
T983 326-328 IN denotes in
T984 329-334 JJ denotes human
T985 335-344 JJ denotes embryonic
T986 345-351 NN denotes kidney
T987 352-353 -LRB- denotes (
T988 353-356 NN denotes HEK
T989 356-357 -RRB- denotes )
T990 358-362 NN denotes 293F
T991 363-368 NNS denotes cells
R918 T916 T915 arg1Of domains,Protein
R919 T916 T917 arg1Of domains,are
R920 T918 T917 arg2Of illustrated,are
R921 T916 T918 arg2Of domains,illustrated
R922 T918 T919 arg1Of illustrated,:
R923 T967 T919 arg2Of SDS–polyacrylamide,:
R924 T921 T920 arg1Of domain,N-terminal
R925 T921 T922 arg1Of domain,(
R940 T937 T935 arg3Of ),(
R941 T932 T938 arg1Of ",",","
R942 T940 T938 arg2Of repeat,","
R943 T940 T939 arg1Of repeat,heptad
R944 T940 T941 arg1Of repeat,1
R945 T940 T942 arg1Of repeat,(
R946 T943 T942 arg2Of HR1,(
R947 T944 T942 arg3Of ),(
R948 T938 T945 arg1Of ",",","
R949 T958 T945 arg2Of and,","
R950 T947 T946 arg1Of helix,central
R951 T947 T948 arg1Of helix,(
R952 T949 T948 arg2Of CH,(
R984 T980 T979 arg1Of arrowhead,the
R985 T970 T982 arg2Of analysis,expressed
R986 T982 T983 arg1Of expressed,in
R987 T991 T983 arg2Of cells,in
R988 T991 T984 arg1Of cells,human
R989 T991 T985 arg1Of cells,embryonic
R990 T991 T986 arg1Of cells,kidney
R991 T991 T987 arg1Of cells,(
R926 T923 T922 arg2Of NTD,(
R927 T924 T922 arg3Of ),(
R928 T921 T925 arg1Of domain,","
R929 T928 T925 arg2Of domain,","
R930 T928 T926 arg1Of domain,receptor
R931 T928 T927 arg1Of domain,binding
R932 T928 T929 arg1Of domain,(
R933 T930 T929 arg2Of RBD,(
R934 T931 T929 arg3Of ),(
R935 T925 T932 arg1Of ",",","
R936 T934 T932 arg2Of peptide,","
R937 T934 T933 arg1Of peptide,fusion
R938 T934 T935 arg1Of peptide,(
R939 T936 T935 arg2Of FP,(
R953 T950 T948 arg3Of ),(
R954 T947 T951 arg1Of helix,","
R955 T953 T951 arg2Of domain,","
R956 T953 T952 arg1Of domain,connector
R957 T953 T954 arg1Of domain,(
R958 T955 T954 arg2Of CD,(
R959 T956 T954 arg3Of ),(
R960 T958 T957 arg1Of and,","
R961 T951 T958 arg1Of ",",and
R962 T960 T958 arg2Of domain,and
R963 T960 T959 arg1Of domain,transmembrane
R964 T960 T961 arg1Of domain,(
R965 T962 T961 arg2Of TM,(
R966 T963 T961 arg3Of ),(
R967 T958 T964 arg1Of and,(
R968 T965 T964 arg2Of B,(
R969 T966 T964 arg3Of ),(
R970 T938 T967 arg1Of ",",SDS–polyacrylamide
R971 T970 T967 arg2Of analysis,SDS–polyacrylamide
R972 T970 T968 arg1Of analysis,gel
R973 T970 T969 arg1Of analysis,electrophoresis
R974 T970 T971 arg1Of analysis,of
R975 T975 T971 arg2Of protein,of
R976 T975 T972 arg1Of protein,the
R977 T975 T973 arg1Of protein,SARS-CoV-2
R978 T975 T974 arg1Of protein,S
R979 T975 T976 arg1Of protein,(
R980 T977 T976 arg2Of indicated,(
R981 T981 T976 arg3Of ),(
R982 T980 T977 arg1Of arrowhead,indicated
R983 T980 T978 arg2Of arrowhead,by
R992 T988 T987 arg2Of HEK,(
R993 T989 T987 arg3Of ),(
R994 T991 T990 arg1Of cells,293F

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T33 0-7 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 141-146 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 279-286 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 345-351 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 363-368 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T41 0-7 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T42 96-103 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T43 211-214 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T44 215-229 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T47 279-286 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T25 266-276 Species denotes SARS-CoV-2 NCBItxid:2697049
T26 329-334 Species denotes human NCBItxid:9606

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T42 0-369 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 141-146 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 345-351 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 266-276 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
173 277-286 Gene denotes S protein Gene:43740568
178 266-276 Species denotes SARS-CoV-2 Tax:2697049
179 329-334 Species denotes human Tax:9606
187 211-229 Chemical denotes SDS–polyacrylamide
188 335-351 Disease denotes embryonic kidney MESH:D007674
189 353-362 CellLine denotes HEK) 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T608 83-86 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022
T617 277-286 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T650 335-344 Protein denotes embryonic https://www.uniprot.org/uniprot/P02301
T651 353-356 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 345-351 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 0-369 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
173 277-286 Gene denotes S protein Gene:43740568
178 266-276 Species denotes SARS-CoV-2 Tax:2697049
179 329-334 Species denotes human Tax:9606
187 211-229 Chemical denotes SDS–polyacrylamide
188 335-351 Disease denotes embryonic kidney MESH:D007674
189 353-362 CellLine denotes HEK) 293F CVCL:6642