> top > docs > PMC:7199903 > spans > 5383-6389 > annotations

PMC:7199903 / 5383-6389 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 49-61 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 206-213 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 347-352 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 485-492 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 551-557 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 569-574 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 622-627 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 811-818 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 858-865 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 897-904 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 347-352 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 551-557 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 36-44 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 258-261 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T29 472-480 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 798-806 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 845-853 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 1-2 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 116-119 http://purl.obolibrary.org/obo/CLO_0009141 denotes S/T
T40 116-119 http://purl.obolibrary.org/obo/CLO_0050980 denotes S/T
T41 302-309 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T42 414-415 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T43 535-540 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 541-557 http://www.ebi.ac.uk/efo/EFO_0000927 denotes embryonic kidney
T45 564-574 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells
T46 622-627 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T45 49-61 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46 160-163 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T49 184-187 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T51 192-195 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T53 200-203 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T54 206-213 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T55 302-309 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T56 311-313 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T57 377-379 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T58 408-410 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T60 417-420 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T61 421-435 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T64 485-492 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T65 770-772 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T66 811-818 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T67 858-865 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 897-904 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T30 569-574 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T31 622-627 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T885 127-128 NN denotes X
T886 129-130 SYM denotes ≠
T887 131-132 NN denotes P
T888 132-133 -RRB- denotes )
T889 134-137 VBP denotes are
T890 138-143 VBN denotes shown
T891 144-146 IN denotes as
T892 147-155 NNS denotes branches
T893 156-157 -LRB- denotes (
T894 157-158 NN denotes N
T895 158-159 -COMMA- denotes ,
T896 160-163 NNP denotes Asn
T897 163-164 -SEMICOLON- denotes ;
T898 165-166 SYM denotes X
T899 166-167 -COMMA- denotes ,
T900 168-171 DT denotes any
T901 172-179 NN denotes residue
T902 179-180 -SEMICOLON- denotes ;
T903 181-182 NN denotes S
T904 182-183 -COMMA- denotes ,
T905 184-187 NN denotes Ser
T906 187-188 -SEMICOLON- denotes ;
T907 189-190 NN denotes T
T908 190-191 -COMMA- denotes ,
T909 192-195 NNP denotes Thr
T910 195-196 -SEMICOLON- denotes ;
T911 197-198 NN denotes P
T912 198-199 -COMMA- denotes ,
T913 200-203 NNP denotes Pro
T914 203-204 -RRB- denotes )
T915 206-213 NN denotes Protein
T916 214-221 NNS denotes domains
T917 222-225 VBP denotes are
T918 226-237 VBN denotes illustrated
T919 237-238 -COLON- denotes :
T920 239-249 JJ denotes N-terminal
T921 250-256 NN denotes domain
T922 257-258 -LRB- denotes (
T923 258-261 NN denotes NTD
T924 261-262 -RRB- denotes )
T925 262-263 -COMMA- denotes ,
T926 264-272 NN denotes receptor
T927 273-280 NN denotes binding
T928 281-287 NN denotes domain
T929 288-289 -LRB- denotes (
T930 289-292 NN denotes RBD
T931 292-293 -RRB- denotes )
T932 293-294 -COMMA- denotes ,
T933 295-301 NN denotes fusion
T934 302-309 NN denotes peptide
T935 310-311 -LRB- denotes (
T936 311-313 NN denotes FP
T937 313-314 -RRB- denotes )
T938 314-315 -COMMA- denotes ,
T939 316-322 NN denotes heptad
T940 323-329 NN denotes repeat
T941 330-331 CD denotes 1
T942 332-333 -LRB- denotes (
T943 333-336 NN denotes HR1
T944 336-337 -RRB- denotes )
T945 337-338 -COMMA- denotes ,
T946 339-346 JJ denotes central
T947 347-352 NN denotes helix
T948 353-354 -LRB- denotes (
T949 354-356 NN denotes CH
T950 356-357 -RRB- denotes )
T951 357-358 -COMMA- denotes ,
T952 359-368 NN denotes connector
T953 369-375 NN denotes domain
T954 376-377 -LRB- denotes (
T955 377-379 NN denotes CD
T956 379-380 -RRB- denotes )
T957 380-381 -COMMA- denotes ,
T958 382-385 CC denotes and
T959 386-399 JJ denotes transmembrane
T960 400-406 NN denotes domain
T961 407-408 -LRB- denotes (
T962 408-410 NN denotes TM
T963 410-411 -RRB- denotes )
T964 413-414 -LRB- denotes (
T965 414-415 NN denotes B
T966 415-416 -RRB- denotes )
T967 417-435 NN denotes SDS–polyacrylamide
T968 436-439 NN denotes gel
T969 440-455 NN denotes electrophoresis
T970 456-464 NN denotes analysis
T971 465-467 IN denotes of
T972 468-471 DT denotes the
T973 472-482 NN denotes SARS-CoV-2
T974 483-484 NN denotes S
T975 485-492 NN denotes protein
T976 493-494 -LRB- denotes (
T977 494-503 VBN denotes indicated
T978 504-506 IN denotes by
T979 507-510 DT denotes the
T980 511-520 NN denotes arrowhead
T981 520-521 -RRB- denotes )
T982 522-531 VBN denotes expressed
T983 532-534 IN denotes in
T984 535-540 JJ denotes human
T985 541-550 JJ denotes embryonic
T986 551-557 NN denotes kidney
T987 558-559 -LRB- denotes (
T988 559-562 NN denotes HEK
T989 562-563 -RRB- denotes )
T990 564-568 NN denotes 293F
T991 569-574 NNS denotes cells
T992 576-580 NN denotes Lane
T993 581-582 CD denotes 1
T994 582-583 -COLON- denotes :
T995 584-592 VBN denotes filtered
T996 593-604 NN denotes supernatant
T997 605-609 IN denotes from
T998 610-621 VBN denotes transfected
T999 622-627 NNS denotes cells
T1000 627-628 -SEMICOLON- denotes ;
T1001 629-633 NN denotes lane
T1002 634-635 CD denotes 2
T1003 635-636 -COLON- denotes :
T1004 637-649 NN denotes flow-through
T1005 650-654 IN denotes from
T1006 655-666 NN denotes StrepTactin
T1007 667-672 NN denotes resin
T1008 672-673 -SEMICOLON- denotes ;
T1009 674-678 NN denotes lane
T1010 679-680 CD denotes 3
T1011 680-681 -COLON- denotes :
T1012 682-686 NN denotes wash
T1013 687-691 IN denotes from
T1014 692-703 NN denotes StrepTactin
T1015 704-709 NN denotes resin
T1016 709-710 -SEMICOLON- denotes ;
T1017 711-715 NN denotes lane
T1018 716-717 CD denotes 4
T1019 717-718 -COLON- denotes :
T1020 719-726 NN denotes elution
T1021 727-731 IN denotes from
T1022 732-743 NN denotes StrepTactin
T1023 744-750 NN denotes resin.
T1024 751-752 -LRB- denotes (
T1025 752-753 NN denotes C
T1026 753-754 -RRB- denotes )
T1027 755-769 JJ denotes Negative-stain
T1028 770-772 NN denotes EM
T1029 773-775 NN denotes 2D
T1030 776-781 NN denotes class
T1031 782-790 NNS denotes averages
T1032 791-793 IN denotes of
T1033 794-797 DT denotes the
T1034 798-808 NN denotes SARS-CoV-2
T1035 809-810 NN denotes S
T1036 811-818 NN denotes protein
T1037 820-822 NN denotes 2D
T1038 823-828 NN denotes class
T1039 829-837 NNS denotes averages
T1040 838-840 IN denotes of
T1041 841-844 DT denotes the
T1042 845-855 NN denotes SARS-CoV-2
T1043 856-857 NN denotes S
T1044 858-865 NN denotes protein
T1045 866-869 VBP denotes are
T1046 870-875 VBN denotes shown
T1047 875-876 -COMMA- denotes ,
T1048 877-887 VBG denotes confirming
T1049 888-892 IN denotes that
T1050 893-896 DT denotes the
T1051 897-904 NN denotes protein
T1052 905-911 VBZ denotes adopts
T1053 912-915 DT denotes the
T1054 916-924 JJ denotes trimeric
T1055 925-934 NN denotes prefusion
T1056 935-947 NN denotes conformation
T1057 948-956 VBG denotes matching
T1058 957-960 DT denotes the
T1059 961-969 NN denotes material
T1060 970-974 VBN denotes used
T1061 975-977 TO denotes to
T1062 978-987 VB denotes determine
T1063 988-991 DT denotes the
T1064 992-1001 NN denotes structure
T1065 1002-1003 -LRB- denotes (
T1066 1003-1004 CD denotes 4
T1067 1004-1005 -RRB- denotes )
T865 0-1 -LRB- denotes (
T866 1-2 NN denotes A
T867 2-3 -RRB- denotes )
T868 4-13 JJ denotes Schematic
T869 14-28 NN denotes representation
T870 29-31 IN denotes of
T871 32-35 DT denotes the
T872 36-46 NN denotes SARS-CoV-2
T873 47-48 NN denotes S
T874 49-61 NN denotes glycoprotein
T875 63-66 DT denotes The
T876 67-76 NNS denotes positions
T877 77-79 IN denotes of
T878 80-88 JJ denotes N-linked
T879 89-102 NN denotes glycosylation
T880 103-110 NNS denotes sequons
T881 111-112 -LRB- denotes (
T882 112-119 NN denotes N-X-S/T
T883 119-120 -COMMA- denotes ,
T884 121-126 WRB denotes where
R904 T901 T899 arg2Of residue,","
R905 T901 T900 arg1Of residue,any
R906 T894 T902 arg1Of N,;
R907 T903 T902 arg2Of S,;
R908 T903 T904 arg1Of S,","
R909 T905 T904 arg2Of Ser,","
R910 T902 T906 arg1Of ;,;
R911 T907 T906 arg2Of T,;
R912 T907 T908 arg1Of T,","
R913 T909 T908 arg2Of Thr,","
R914 T907 T910 arg1Of T,;
R915 T911 T910 arg2Of P,;
R916 T911 T912 arg1Of P,","
R917 T913 T912 arg2Of Pro,","
R918 T916 T915 arg1Of domains,Protein
R919 T916 T917 arg1Of domains,are
R920 T918 T917 arg2Of illustrated,are
R921 T916 T918 arg2Of domains,illustrated
R922 T918 T919 arg1Of illustrated,:
R923 T967 T919 arg2Of SDS–polyacrylamide,:
R924 T921 T920 arg1Of domain,N-terminal
R925 T921 T922 arg1Of domain,(
R940 T937 T935 arg3Of ),(
R941 T932 T938 arg1Of ",",","
R942 T940 T938 arg2Of repeat,","
R943 T940 T939 arg1Of repeat,heptad
R944 T940 T941 arg1Of repeat,1
R945 T940 T942 arg1Of repeat,(
R946 T943 T942 arg2Of HR1,(
R947 T944 T942 arg3Of ),(
R948 T938 T945 arg1Of ",",","
R949 T958 T945 arg2Of and,","
R950 T947 T946 arg1Of helix,central
R951 T947 T948 arg1Of helix,(
R952 T949 T948 arg2Of CH,(
R984 T980 T979 arg1Of arrowhead,the
R985 T970 T982 arg2Of analysis,expressed
R986 T982 T983 arg1Of expressed,in
R987 T991 T983 arg2Of cells,in
R988 T991 T984 arg1Of cells,human
R989 T991 T985 arg1Of cells,embryonic
R990 T991 T986 arg1Of cells,kidney
R991 T991 T987 arg1Of cells,(
R1056 T1056 T1052 arg2Of conformation,adopts
R869 T869 T865 arg1Of representation,(
R870 T866 T865 arg2Of A,(
R871 T867 T865 arg3Of ),(
R872 T869 T868 arg1Of representation,Schematic
R873 T869 T870 arg1Of representation,of
R874 T874 T870 arg2Of glycoprotein,of
R875 T874 T871 arg1Of glycoprotein,the
R876 T874 T872 arg1Of glycoprotein,SARS-CoV-2
R877 T874 T873 arg1Of glycoprotein,S
R878 T876 T875 arg1Of positions,The
R879 T876 T877 arg1Of positions,of
R880 T882 T877 arg2Of N-X-S/T,of
R881 T882 T878 arg1Of N-X-S/T,N-linked
R882 T882 T879 arg1Of N-X-S/T,glycosylation
R883 T882 T880 arg1Of N-X-S/T,sequons
R884 T882 T881 arg1Of N-X-S/T,(
R885 T882 T883 arg1Of N-X-S/T,","
R886 T882 T884 arg1Of N-X-S/T,where
R887 T890 T884 arg2Of shown,where
R888 T887 T885 arg1Of P,X
R889 T887 T886 arg1Of P,≠
R890 T887 T888 arg1Of P,)
R891 T887 T889 arg1Of P,are
R892 T890 T889 arg2Of shown,are
R893 T887 T890 arg2Of P,shown
R894 T890 T891 arg1Of shown,as
R895 T892 T891 arg2Of branches,as
R896 T876 T893 arg1Of positions,(
R897 T902 T893 arg2Of ;,(
R898 T914 T893 arg3Of ),(
R899 T894 T895 arg1Of N,","
R900 T896 T895 arg2Of Asn,","
R901 T894 T897 arg1Of N,;
R902 T894 T898 arg1Of N,X
R903 T894 T899 arg1Of N,","
R926 T923 T922 arg2Of NTD,(
R927 T924 T922 arg3Of ),(
R928 T921 T925 arg1Of domain,","
R929 T928 T925 arg2Of domain,","
R930 T928 T926 arg1Of domain,receptor
R931 T928 T927 arg1Of domain,binding
R932 T928 T929 arg1Of domain,(
R933 T930 T929 arg2Of RBD,(
R934 T931 T929 arg3Of ),(
R935 T925 T932 arg1Of ",",","
R936 T934 T932 arg2Of peptide,","
R937 T934 T933 arg1Of peptide,fusion
R938 T934 T935 arg1Of peptide,(
R939 T936 T935 arg2Of FP,(
R953 T950 T948 arg3Of ),(
R954 T947 T951 arg1Of helix,","
R955 T953 T951 arg2Of domain,","
R956 T953 T952 arg1Of domain,connector
R957 T953 T954 arg1Of domain,(
R958 T955 T954 arg2Of CD,(
R959 T956 T954 arg3Of ),(
R960 T958 T957 arg1Of and,","
R961 T951 T958 arg1Of ",",and
R962 T960 T958 arg2Of domain,and
R963 T960 T959 arg1Of domain,transmembrane
R964 T960 T961 arg1Of domain,(
R965 T962 T961 arg2Of TM,(
R966 T963 T961 arg3Of ),(
R967 T958 T964 arg1Of and,(
R968 T965 T964 arg2Of B,(
R969 T966 T964 arg3Of ),(
R970 T938 T967 arg1Of ",",SDS–polyacrylamide
R971 T970 T967 arg2Of analysis,SDS–polyacrylamide
R972 T970 T968 arg1Of analysis,gel
R973 T970 T969 arg1Of analysis,electrophoresis
R974 T970 T971 arg1Of analysis,of
R975 T975 T971 arg2Of protein,of
R976 T975 T972 arg1Of protein,the
R977 T975 T973 arg1Of protein,SARS-CoV-2
R978 T975 T974 arg1Of protein,S
R979 T975 T976 arg1Of protein,(
R980 T977 T976 arg2Of indicated,(
R981 T981 T976 arg3Of ),(
R982 T980 T977 arg1Of arrowhead,indicated
R983 T980 T978 arg2Of arrowhead,by
R992 T988 T987 arg2Of HEK,(
R993 T989 T987 arg3Of ),(
R994 T991 T990 arg1Of cells,293F
R995 T992 T993 arg1Of Lane,1
R996 T992 T994 arg1Of Lane,:
R997 T996 T994 arg2Of supernatant,:
R998 T996 T995 arg2Of supernatant,filtered
R999 T996 T997 arg1Of supernatant,from
R1000 T999 T997 arg2Of cells,from
R1001 T999 T998 arg2Of cells,transfected
R1002 T996 T1000 arg1Of supernatant,;
R1003 T1001 T1000 arg2Of lane,;
R1004 T1001 T1002 arg1Of lane,2
R1005 T1001 T1003 arg1Of lane,:
R1006 T1005 T1004 arg1Of from,flow-through
R1007 T1001 T1005 arg1Of lane,from
R1008 T1008 T1005 arg2Of ;,from
R1009 T1007 T1006 arg1Of resin,StrepTactin
R1010 T1007 T1008 arg1Of resin,;
R1011 T1009 T1008 arg2Of lane,;
R1012 T1009 T1010 arg1Of lane,3
R1013 T1001 T1011 arg1Of lane,:
R1014 T1013 T1012 arg1Of from,wash
R1015 T1001 T1013 arg1Of lane,from
R1016 T1015 T1013 arg2Of resin,from
R1017 T1015 T1014 arg1Of resin,StrepTactin
R1018 T1001 T1016 arg1Of lane,;
R1019 T1017 T1016 arg2Of lane,;
R1020 T1017 T1018 arg1Of lane,4
R1021 T1017 T1019 arg1Of lane,:
R1022 T1021 T1020 arg1Of from,elution
R1023 T1017 T1021 arg1Of lane,from
R1024 T1031 T1021 arg2Of averages,from
R1025 T1031 T1022 arg1Of averages,StrepTactin
R1026 T1031 T1023 arg1Of averages,resin.
R1027 T1031 T1024 arg1Of averages,(
R1028 T1025 T1024 arg2Of C,(
R1029 T1026 T1024 arg3Of ),(
R1030 T1031 T1027 arg1Of averages,Negative-stain
R1031 T1031 T1028 arg1Of averages,EM
R1032 T1031 T1029 arg1Of averages,2D
R1033 T1031 T1030 arg1Of averages,class
R1034 T1031 T1032 arg1Of averages,of
R1035 T1036 T1032 arg2Of protein,of
R1036 T1036 T1033 arg1Of protein,the
R1037 T1036 T1034 arg1Of protein,SARS-CoV-2
R1038 T1036 T1035 arg1Of protein,S
R1039 T1039 T1037 arg1Of averages,2D
R1040 T1039 T1038 arg1Of averages,class
R1041 T1039 T1040 arg1Of averages,of
R1042 T1044 T1040 arg2Of protein,of
R1043 T1044 T1041 arg1Of protein,the
R1044 T1044 T1042 arg1Of protein,SARS-CoV-2
R1045 T1044 T1043 arg1Of protein,S
R1046 T1039 T1045 arg1Of averages,are
R1047 T1046 T1045 arg2Of shown,are
R1048 T1039 T1046 arg2Of averages,shown
R1049 T1048 T1046 arg3Of confirming,shown
R1050 T1046 T1047 arg1Of shown,","
R1051 T1039 T1048 arg1Of averages,confirming
R1052 T1052 T1048 arg2Of adopts,confirming
R1053 T1052 T1049 arg1Of adopts,that
R1054 T1051 T1050 arg1Of protein,the
R1055 T1051 T1052 arg1Of protein,adopts
R1057 T1056 T1053 arg1Of conformation,the
R1058 T1056 T1054 arg1Of conformation,trimeric
R1059 T1056 T1055 arg1Of conformation,prefusion
R1060 T1056 T1057 arg1Of conformation,matching
R1061 T1059 T1057 arg2Of material,matching
R1062 T1059 T1058 arg1Of material,the
R1063 T1059 T1060 arg2Of material,used
R1064 T1062 T1060 arg3Of determine,used
R1065 T1062 T1061 arg1Of determine,to
R1066 T1059 T1062 arg1Of material,determine
R1067 T1064 T1062 arg2Of structure,determine
R1068 T1064 T1063 arg1Of structure,the
R1069 T1064 T1065 arg1Of structure,(
R1070 T1066 T1065 arg2Of 4,(
R1071 T1067 T1065 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T32 49-61 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 206-213 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 347-352 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 485-492 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 551-557 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 569-574 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 622-627 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 811-818 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 858-865 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 897-904 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T32 49-61 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T33 160-163 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T36 184-187 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T38 192-195 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T40 200-203 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T41 206-213 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T42 302-309 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T43 417-420 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T44 421-435 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T47 485-492 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T48 811-818 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 858-865 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 897-904 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T24 36-46 Species denotes SARS-CoV-2 NCBItxid:2697049
T25 472-482 Species denotes SARS-CoV-2 NCBItxid:2697049
T26 535-540 Species denotes human NCBItxid:9606
T27 798-808 Species denotes SARS-CoV-2 NCBItxid:2697049
T28 845-855 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T40 0-62 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 63-205 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 206-575 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 576-819 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 820-1006 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 347-352 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 551-557 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 36-46 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T25 472-482 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T26 798-808 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T27 845-855 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
171 856-865 Gene denotes S protein Gene:43740568
172 809-818 Gene denotes S protein Gene:43740568
173 483-492 Gene denotes S protein Gene:43740568
174 181-182 Gene denotes S Gene:43740568
175 116-117 Gene denotes S Gene:43740568
176 47-48 Gene denotes S Gene:43740568
177 36-46 Species denotes SARS-CoV-2 Tax:2697049
178 472-482 Species denotes SARS-CoV-2 Tax:2697049
179 535-540 Species denotes human Tax:9606
180 798-808 Species denotes SARS-CoV-2 Tax:2697049
181 845-855 Species denotes SARS-CoV-2 Tax:2697049
182 80-81 Chemical denotes N MESH:D009584
183 160-163 Chemical denotes Asn MESH:D001216
184 184-187 Chemical denotes Ser MESH:D012694
185 192-195 Chemical denotes Thr MESH:D013912
186 200-203 Chemical denotes Pro MESH:D011392
187 417-435 Chemical denotes SDS–polyacrylamide
188 541-557 Disease denotes embryonic kidney MESH:D007674
189 559-568 CellLine denotes HEK) 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T509 47-61 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T608 289-292 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022
T617 483-492 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T650 541-550 Protein denotes embryonic https://www.uniprot.org/uniprot/P02301
T651 559-562 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320
T654 809-818 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T687 856-865 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 551-557 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T24 89-102 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T22 89-102 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T24 80-102 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T25 89-102 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 192-195 https://glytoucan.org/Structures/Glycans/G69371PB denotes Thr
T2 192-195 https://glytoucan.org/Structures/Glycans/G00134PL denotes Thr
T3 192-195 https://glytoucan.org/Structures/Glycans/G52865ZM denotes Thr
T4 192-195 https://glytoucan.org/Structures/Glycans/G50601AY denotes Thr
T5 192-195 https://glytoucan.org/Structures/Glycans/G27898GL denotes Thr
T6 192-195 https://glytoucan.org/Structures/Glycans/G90753WM denotes Thr
T7 192-195 https://glytoucan.org/Structures/Glycans/G57814GP denotes Thr
T8 192-195 https://glytoucan.org/Structures/Glycans/G42918SL denotes Thr
T9 192-195 https://glytoucan.org/Structures/Glycans/G81521LC denotes Thr
T10 192-195 https://glytoucan.org/Structures/Glycans/G19289PT denotes Thr
T11 192-195 https://glytoucan.org/Structures/Glycans/G23779KC denotes Thr
T12 192-195 https://glytoucan.org/Structures/Glycans/G94729UX denotes Thr
T13 192-195 https://glytoucan.org/Structures/Glycans/G49708JS denotes Thr
T14 192-195 https://glytoucan.org/Structures/Glycans/G60349YI denotes Thr
T15 192-195 https://glytoucan.org/Structures/Glycans/G63317ON denotes Thr
T16 192-195 https://glytoucan.org/Structures/Glycans/G71284FA denotes Thr
T17 192-195 https://glytoucan.org/Structures/Glycans/G42091PK denotes Thr
T18 192-195 https://glytoucan.org/Structures/Glycans/G39722QK denotes Thr
T19 192-195 https://glytoucan.org/Structures/Glycans/G76637LW denotes Thr
T20 192-195 https://glytoucan.org/Structures/Glycans/G46130CG denotes Thr
T21 192-195 https://glytoucan.org/Structures/Glycans/G05333AM denotes Thr
T22 192-195 https://glytoucan.org/Structures/Glycans/G77428YW denotes Thr
T23 192-195 https://glytoucan.org/Structures/Glycans/G15142RK denotes Thr
T24 192-195 https://glytoucan.org/Structures/Glycans/G06824UZ denotes Thr
T25 192-195 https://glytoucan.org/Structures/Glycans/G48723MN denotes Thr
T26 192-195 https://glytoucan.org/Structures/Glycans/G35093GE denotes Thr
T27 192-195 https://glytoucan.org/Structures/Glycans/G34845TQ denotes Thr
T28 192-195 https://glytoucan.org/Structures/Glycans/G71815PL denotes Thr
T29 192-195 https://glytoucan.org/Structures/Glycans/G97173UR denotes Thr
T30 192-195 https://glytoucan.org/Structures/Glycans/G53453JD denotes Thr
T31 192-195 https://glytoucan.org/Structures/Glycans/G81407LL denotes Thr
T32 192-195 https://glytoucan.org/Structures/Glycans/G46430YF denotes Thr

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 0-62 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 63-205 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 206-575 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 576-819 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 820-1006 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 856-865 Gene denotes S protein Gene:43740568
172 809-818 Gene denotes S protein Gene:43740568
173 483-492 Gene denotes S protein Gene:43740568
174 181-182 Gene denotes S Gene:43740568
175 116-117 Gene denotes S Gene:43740568
176 47-48 Gene denotes S Gene:43740568
177 36-46 Species denotes SARS-CoV-2 Tax:2697049
178 472-482 Species denotes SARS-CoV-2 Tax:2697049
179 535-540 Species denotes human Tax:9606
180 798-808 Species denotes SARS-CoV-2 Tax:2697049
181 845-855 Species denotes SARS-CoV-2 Tax:2697049
182 80-81 Chemical denotes N MESH:D009584
183 160-163 Chemical denotes Asn MESH:D001216
184 184-187 Chemical denotes Ser MESH:D012694
185 192-195 Chemical denotes Thr MESH:D013912
186 200-203 Chemical denotes Pro MESH:D011392
187 417-435 Chemical denotes SDS–polyacrylamide
188 541-557 Disease denotes embryonic kidney MESH:D007674
189 559-568 CellLine denotes HEK) 293F CVCL:6642