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PMC:7199903 / 4682-4938 JSONTXT

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LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T35 131-132 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 223-224 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T33 139-146 Chemical denotes Gly-Ser http://purl.obolibrary.org/obo/CHEBI_73516
T34 139-142 Chemical denotes Gly http://purl.obolibrary.org/obo/CHEBI_15428
T35 143-146 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T37 147-154 Chemical denotes Ala-Ser http://purl.obolibrary.org/obo/CHEBI_73394
T38 147-150 Chemical denotes Ala http://purl.obolibrary.org/obo/CHEBI_16977|http://purl.obolibrary.org/obo/CHEBI_46217
T40 151-154 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T29 191-195 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T752 0-13 NN denotes Stabilization
T753 14-16 IN denotes of
T754 17-20 DT denotes the
T755 21-29 JJ denotes trimeric
T756 30-39 NN denotes prefusion
T757 40-49 NN denotes structure
T758 50-53 VBD denotes was
T759 54-62 VBN denotes achieved
T760 63-65 IN denotes by
T761 66-71 VBG denotes using
T762 72-75 DT denotes the
T763 76-78 NN denotes 2P
T764 79-90 VBG denotes stabilizing
T765 91-100 NNS denotes mutations
T766 101-102 -LRB- denotes (
T767 102-104 CD denotes 20
T768 104-105 -RRB- denotes )
T769 106-108 IN denotes at
T770 109-117 NNS denotes residues
T771 118-121 CD denotes 986
T772 122-125 CC denotes and
T773 126-129 CD denotes 987
T774 129-130 -COMMA- denotes ,
T775 131-132 DT denotes a
T776 133-137 NN denotes GSAS
T777 138-139 -LRB- denotes (
T778 139-154 NN denotes Gly-Ser-Ala-Ser
T779 154-155 -RRB- denotes )
T780 156-168 NN denotes substitution
T781 169-171 IN denotes at
T782 172-175 DT denotes the
T783 176-181 NN denotes furin
T784 182-190 NN denotes cleavage
T785 191-195 NN denotes site
T786 196-197 -LRB- denotes (
T787 197-205 NNS denotes residues
T788 206-209 CD denotes 682
T789 210-212 TO denotes to
T790 213-216 CD denotes 685
T791 216-217 -RRB- denotes )
T792 217-218 -COMMA- denotes ,
T793 219-222 CC denotes and
T794 223-224 DT denotes a
T795 225-235 JJ denotes C-terminal
T796 236-249 NN denotes trimerization
T797 250-255 NN denotes motif
R756 T752 T753 arg1Of Stabilization,of
R757 T757 T753 arg2Of structure,of
R758 T757 T754 arg1Of structure,the
R759 T757 T755 arg1Of structure,trimeric
R760 T757 T756 arg1Of structure,prefusion
R761 T752 T758 arg1Of Stabilization,was
R762 T759 T758 arg2Of achieved,was
R763 T752 T759 arg2Of Stabilization,achieved
R764 T759 T760 arg1Of achieved,by
R765 T761 T760 arg2Of using,by
R766 T765 T761 arg2Of mutations,using
R767 T765 T762 arg1Of mutations,the
R768 T765 T763 arg1Of mutations,2P
R769 T765 T764 arg1Of mutations,stabilizing
R770 T765 T766 arg1Of mutations,(
R771 T767 T766 arg2Of 20,(
R772 T768 T766 arg3Of ),(
R773 T761 T769 arg1Of using,at
R774 T793 T769 arg2Of and,at
R775 T772 T770 arg1Of and,residues
R776 T771 T772 arg1Of 986,and
R777 T773 T772 arg2Of 987,and
R778 T772 T774 arg1Of and,","
R779 T780 T774 arg2Of substitution,","
R780 T780 T775 arg1Of substitution,a
R781 T780 T776 arg1Of substitution,GSAS
R782 T780 T777 arg1Of substitution,(
R783 T778 T777 arg2Of Gly-Ser-Ala-Ser,(
R784 T779 T777 arg3Of ),(
R785 T780 T781 arg1Of substitution,at
R786 T785 T781 arg2Of site,at
R787 T785 T782 arg1Of site,the
R788 T785 T783 arg1Of site,furin
R789 T785 T784 arg1Of site,cleavage
R790 T785 T786 arg1Of site,(
R791 T790 T786 arg2Of 685,(
R792 T791 T786 arg3Of ),(
R793 T790 T787 arg1Of 685,residues
R794 T790 T788 arg1Of 685,682
R795 T790 T789 arg1Of 685,to
R796 T793 T792 arg1Of and,","
R797 T772 T793 arg1Of and,and
R798 T797 T793 arg2Of motif,and
R799 T797 T794 arg1Of motif,a
R800 T797 T795 arg1Of motif,C-terminal
R801 T797 T796 arg1Of motif,trimerization

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T27 139-150 Chemical denotes Gly-Ser-Ala http://purl.obolibrary.org/obo/CHEBI_163987
T28 151-154 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T35 0-256 Sentence denotes Stabilization of the trimeric prefusion structure was achieved by using the 2P stabilizing mutations (20) at residues 986 and 987, a GSAS (Gly-Ser-Ala-Ser) substitution at the furin cleavage site (residues 682 to 685), and a C-terminal trimerization motif.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue
147 139-154 Chemical denotes Gly-Ser-Ala-Ser
149 133-137 CellLine denotes GSAS

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T402 176-181 Protein denotes furin https://www.uniprot.org/uniprot/Q9UCZ5|https://www.uniprot.org/uniprot/Q6LBS3|https://www.uniprot.org/uniprot/Q6GTN6|https://www.uniprot.org/uniprot/Q28193|https://www.uniprot.org/uniprot/Q14336|https://www.uniprot.org/uniprot/P23377|https://www.uniprot.org/uniprot/P23188|https://www.uniprot.org/uniprot/P09958

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T35 0-256 Sentence denotes Stabilization of the trimeric prefusion structure was achieved by using the 2P stabilizing mutations (20) at residues 986 and 987, a GSAS (Gly-Ser-Ala-Ser) substitution at the furin cleavage site (residues 682 to 685), and a C-terminal trimerization motif.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue
147 139-154 Chemical denotes Gly-Ser-Ala-Ser
149 133-137 CellLine denotes GSAS