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PMC:7199903 / 4556-4709 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T28 55-62 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 107-114 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 94-102 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T34 76-78 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T30 55-62 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 79-86 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T32 107-114 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T727 1-9 NN denotes blockade
T728 10-15 VBG denotes using
T729 16-27 NN denotes kifunensine
T730 28-29 -LRB- denotes (
T731 29-30 CD denotes 4
T732 30-31 -RRB- denotes )
T733 33-37 DT denotes This
T734 38-45 NN denotes variant
T735 46-48 IN denotes of
T736 49-52 DT denotes the
T737 53-54 NN denotes S
T738 55-62 NN denotes protein
T739 63-71 VBZ denotes contains
T740 72-75 DT denotes all
T741 76-78 CD denotes 22
T742 79-86 NNS denotes glycans
T743 87-89 IN denotes on
T744 90-93 DT denotes the
T745 94-104 NN denotes SARS-CoV-2
T746 105-106 NN denotes S
T747 107-114 NN denotes protein
T748 115-116 -LRB- denotes (
T749 116-120 NN denotes Fig.
T750 121-123 NN denotes 1A
T751 123-124 -RRB- denotes )
T752 126-139 NN denotes Stabilization
T753 140-142 IN denotes of
T754 143-146 DT denotes the
R733 T727 T728 arg1Of blockade,using
R734 T729 T728 arg2Of kifunensine,using
R735 T729 T730 arg1Of kifunensine,(
R736 T731 T730 arg2Of 4,(
R737 T732 T730 arg3Of ),(
R738 T734 T733 arg1Of variant,This
R739 T734 T735 arg1Of variant,of
R740 T738 T735 arg2Of protein,of
R741 T738 T736 arg1Of protein,the
R742 T738 T737 arg1Of protein,S
R743 T734 T739 arg1Of variant,contains
R744 T742 T739 arg2Of glycans,contains
R745 T741 T740 arg1Of 22,all
R746 T742 T741 arg1Of glycans,22
R747 T739 T743 arg1Of contains,on
R748 T747 T743 arg2Of protein,on
R749 T747 T744 arg1Of protein,the
R750 T747 T745 arg1Of protein,SARS-CoV-2
R751 T747 T746 arg1Of protein,S
R752 T747 T748 arg1Of protein,(
R753 T750 T748 arg2Of 1A,(
R754 T751 T748 arg3Of ),(
R755 T750 T749 arg1Of 1A,Fig.
R756 T752 T753 arg1Of Stabilization,of

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T28 55-62 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 107-114 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 55-62 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 79-86 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T26 107-114 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T21 94-104 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T34 33-125 Sentence denotes This variant of the S protein contains all 22 glycans on the SARS-CoV-2 S protein (Fig. 1A).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 94-104 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
138 53-62 Gene denotes S protein Gene:43740568
139 105-114 Gene denotes S protein Gene:43740568
143 94-104 Species denotes SARS-CoV-2 Tax:2697049
145 16-27 Chemical denotes kifunensine MESH:C065629
146 79-86 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T336 53-62 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T369 105-114 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T34 33-125 Sentence denotes This variant of the S protein contains all 22 glycans on the SARS-CoV-2 S protein (Fig. 1A).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
138 53-62 Gene denotes S protein Gene:43740568
139 105-114 Gene denotes S protein Gene:43740568
143 94-104 Species denotes SARS-CoV-2 Tax:2697049
145 16-27 Chemical denotes kifunensine MESH:C065629
146 79-86 Chemical denotes glycans MESH:D011134