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PMC:7199903 / 3680-4169 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T23 36-43 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T24 235-242 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T25 467-483 Body_part denotes germinal centers http://purl.org/sig/ont/fma/fma55224

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 467-483 Body_part denotes germinal centers http://purl.obolibrary.org/obo/UBERON_0010754

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 199-200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 376-378 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T22 36-43 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23 184-191 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T24 235-242 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 454-463 Chemical denotes immunogen http://purl.obolibrary.org/obo/CHEBI_60816

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T26 265-269 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T599 0-4 JJ denotes High
T600 5-10 JJ denotes viral
T601 11-17 NN denotes glycan
T602 18-25 NN denotes density
T603 26-29 CC denotes and
T604 30-35 JJ denotes local
T605 36-43 NN denotes protein
T606 44-56 NN denotes architecture
T607 57-60 MD denotes can
T608 61-71 RB denotes sterically
T609 72-78 VB denotes impair
T610 79-82 DT denotes the
T611 83-89 NN denotes glycan
T612 90-100 NN denotes maturation
T613 101-108 NN denotes pathway
T614 110-118 JJ denotes Impaired
T615 119-125 NN denotes glycan
T616 126-136 NN denotes maturation
T617 137-146 VBG denotes resulting
T618 147-149 IN denotes in
T619 150-153 DT denotes the
T620 154-162 NN denotes presence
T621 163-165 IN denotes of
T622 166-183 JJ denotes oligomannose-type
T623 184-191 NNS denotes glycans
T624 192-195 MD denotes can
T625 196-198 VB denotes be
T626 199-200 DT denotes a
T627 201-210 JJ denotes sensitive
T628 211-219 NN denotes reporter
T629 220-222 IN denotes of
T630 223-234 JJ denotes native-like
T631 235-242 NN denotes protein
T632 243-255 NN denotes architecture
T633 256-257 -LRB- denotes (
T634 257-258 CD denotes 8
T635 258-259 -RRB- denotes )
T636 259-260 -COMMA- denotes ,
T637 261-264 CC denotes and
T638 265-278 JJ denotes site-specific
T639 279-285 NN denotes glycan
T640 286-294 NN denotes analysis
T641 295-298 MD denotes can
T642 299-301 VB denotes be
T643 302-306 VBN denotes used
T644 307-309 TO denotes to
T645 310-317 VB denotes compare
T646 318-327 JJ denotes different
T647 328-338 NNS denotes immunogens
T648 339-342 CC denotes and
T649 343-350 NN denotes monitor
T650 351-364 NN denotes manufacturing
T651 365-374 NNS denotes processes
T652 375-376 -LRB- denotes (
T653 376-378 CD denotes 18
T654 378-379 -RRB- denotes )
T655 381-393 RB denotes Additionally
T656 393-394 -COMMA- denotes ,
T657 395-408 NN denotes glycosylation
T658 409-412 MD denotes can
T659 413-422 VB denotes influence
T660 423-426 DT denotes the
T661 427-438 NN denotes trafficking
T662 439-441 IN denotes of
T663 442-453 JJ denotes recombinant
T664 454-463 NN denotes immunogen
T665 464-466 TO denotes to
T666 467-475 JJ denotes germinal
T667 476-483 NNS denotes centers
T668 484-485 -LRB- denotes (
T669 485-487 CD denotes 19
T670 487-488 -RRB- denotes )
R598 T602 T599 arg1Of density,High
R599 T602 T600 arg1Of density,viral
R600 T602 T601 arg1Of density,glycan
R601 T602 T603 arg1Of density,and
R602 T606 T603 arg2Of architecture,and
R603 T606 T604 arg1Of architecture,local
R604 T606 T605 arg1Of architecture,protein
R605 T603 T607 arg1Of and,can
R606 T609 T607 arg2Of impair,can
R607 T609 T608 arg1Of impair,sterically
R608 T603 T609 arg1Of and,impair
R609 T613 T609 arg2Of pathway,impair
R610 T613 T610 arg1Of pathway,the
R611 T613 T611 arg1Of pathway,glycan
R612 T613 T612 arg1Of pathway,maturation
R613 T616 T614 arg1Of maturation,Impaired
R614 T616 T615 arg1Of maturation,glycan
R615 T616 T617 arg1Of maturation,resulting
R616 T617 T618 arg1Of resulting,in
R617 T620 T618 arg2Of presence,in
R618 T620 T619 arg1Of presence,the
R619 T620 T621 arg1Of presence,of
R620 T623 T621 arg2Of glycans,of
R621 T623 T622 arg1Of glycans,oligomannose-type
R622 T616 T624 arg1Of maturation,can
R623 T625 T624 arg2Of be,can
R624 T616 T625 arg1Of maturation,be
R625 T628 T625 arg2Of reporter,be
R626 T628 T626 arg1Of reporter,a
R627 T628 T627 arg1Of reporter,sensitive
R628 T628 T629 arg1Of reporter,of
R629 T632 T629 arg2Of architecture,of
R630 T632 T630 arg1Of architecture,native-like
R631 T632 T631 arg1Of architecture,protein
R632 T632 T633 arg1Of architecture,(
R633 T634 T633 arg2Of 8,(
R634 T635 T633 arg3Of ),(
R635 T637 T636 arg1Of and,","
R636 T625 T637 arg1Of be,and
R637 T643 T637 arg2Of used,and
R638 T640 T638 arg1Of analysis,site-specific
R639 T640 T639 arg1Of analysis,glycan
R640 T640 T641 arg1Of analysis,can
R641 T643 T641 arg2Of used,can
R642 T640 T642 arg1Of analysis,be
R643 T643 T642 arg2Of used,be
R644 T640 T643 arg2Of analysis,used
R645 T645 T643 arg3Of compare,used
R646 T645 T644 arg1Of compare,to
R647 T640 T645 arg1Of analysis,compare
R648 T648 T645 arg2Of and,compare
R649 T647 T646 arg1Of immunogens,different
R650 T647 T648 arg1Of immunogens,and
R651 T651 T648 arg2Of processes,and
R652 T651 T649 arg1Of processes,monitor
R653 T651 T650 arg1Of processes,manufacturing
R654 T651 T652 arg1Of processes,(
R655 T653 T652 arg2Of 18,(
R656 T654 T652 arg3Of ),(
R657 T659 T655 arg1Of influence,Additionally
R658 T659 T656 arg1Of influence,","
R659 T657 T658 arg1Of glycosylation,can
R660 T659 T658 arg2Of influence,can
R661 T657 T659 arg1Of glycosylation,influence
R662 T661 T659 arg2Of trafficking,influence
R663 T661 T660 arg1Of trafficking,the
R664 T661 T662 arg1Of trafficking,of
R665 T664 T662 arg2Of immunogen,of
R666 T664 T663 arg1Of immunogen,recombinant
R667 T664 T665 arg1Of immunogen,to
R668 T667 T665 arg2Of centers,to
R669 T667 T666 arg1Of centers,germinal
R670 T667 T668 arg1Of centers,(
R671 T669 T668 arg2Of 19,(
R672 T670 T668 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T23 36-43 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T24 235-242 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T25 467-483 Body_part denotes germinal centers http://purl.org/sig/ont/fma/fma55224

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T19 36-43 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T20 184-191 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T21 235-242 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T30 0-109 Sentence denotes High viral glycan density and local protein architecture can sterically impair the glycan maturation pathway.
T31 110-380 Sentence denotes Impaired glycan maturation resulting in the presence of oligomannose-type glycans can be a sensitive reporter of native-like protein architecture (8), and site-specific glycan analysis can be used to compare different immunogens and monitor manufacturing processes (18).
T32 381-489 Sentence denotes Additionally, glycosylation can influence the trafficking of recombinant immunogen to germinal centers (19).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 467-483 Body_part denotes germinal centers http://purl.obolibrary.org/obo/UBERON_0010754

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
120 11-17 Chemical denotes glycan MESH:D011134
121 83-89 Chemical denotes glycan MESH:D011134
122 119-125 Chemical denotes glycan MESH:D011134
123 166-178 Chemical denotes oligomannose
124 184-191 Chemical denotes glycans MESH:D011134
125 279-285 Chemical denotes glycan MESH:D011134

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T22 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T20 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T22 395-408 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T30 0-109 Sentence denotes High viral glycan density and local protein architecture can sterically impair the glycan maturation pathway.
T31 110-380 Sentence denotes Impaired glycan maturation resulting in the presence of oligomannose-type glycans can be a sensitive reporter of native-like protein architecture (8), and site-specific glycan analysis can be used to compare different immunogens and monitor manufacturing processes (18).
T32 381-489 Sentence denotes Additionally, glycosylation can influence the trafficking of recombinant immunogen to germinal centers (19).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
120 11-17 Chemical denotes glycan MESH:D011134
121 83-89 Chemical denotes glycan MESH:D011134
122 119-125 Chemical denotes glycan MESH:D011134
123 166-178 Chemical denotes oligomannose
124 184-191 Chemical denotes glycans MESH:D011134
125 279-285 Chemical denotes glycan MESH:D011134