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PMC:7199903 / 206-575 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 4-11 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 152-157 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T4 215-223 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T5 345-358 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 27-36 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 74-77 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 78-80 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T4 152-157 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5 162-167 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 4-11 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 345-358 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T2 27-36 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T3 95-100 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T4 112-117 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T5 152-157 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T6 162-167 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 172-178 http://purl.obolibrary.org/obo/IDO_0000586 denotes infect

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T30 4-11 NN denotes protein
T31 12-16 WDT denotes that
T32 17-26 VBZ denotes initiates
T33 27-36 NN denotes infection
T34 38-42 DT denotes Each
T35 43-51 NN denotes protomer
T36 52-54 IN denotes in
T37 55-58 DT denotes the
T38 59-67 JJ denotes trimeric
T39 68-73 NN denotes spike
T40 74-77 VBZ denotes has
T41 78-80 CD denotes 22
T42 81-94 NN denotes glycosylation
T43 95-100 NNS denotes sites
T44 102-105 WRB denotes How
T45 106-111 DT denotes these
T46 112-117 NNS denotes sites
T47 118-121 VBP denotes are
T48 122-134 VBN denotes glycosylated
T49 135-138 MD denotes may
T50 139-145 VB denotes affect
T51 146-151 WDT denotes which
T52 152-157 NNS denotes cells
T53 158-161 DT denotes the
T54 162-167 NN denotes virus
T55 168-171 MD denotes can
T56 172-178 VB denotes infect
T57 179-182 CC denotes and
T58 183-188 MD denotes could
T59 189-195 VB denotes shield
T60 196-200 DT denotes some
T61 201-209 NNS denotes epitopes
T62 210-214 IN denotes from
T63 215-223 NN denotes antibody
T64 224-238 NN denotes neutralization
T65 240-248 NNP denotes Watanabe
T66 249-251 FW denotes et
T67 252-255 FW denotes al.
T68 256-265 VBN denotes expressed
T69 266-269 CC denotes and
T70 270-278 VBN denotes purified
T71 279-290 JJ denotes recombinant
T72 291-303 VBN denotes glycosylated
T73 304-309 NN denotes spike
T74 310-317 NNS denotes trimers
T75 317-318 -COMMA- denotes ,
T76 319-330 VBD denotes proteolysed
T77 331-335 PRP denotes them
T78 336-338 TO denotes to
T79 339-344 VB denotes yield
T80 345-358 NNS denotes glycopeptides
T81 359-369 VBG denotes containing
R29 T30 T31 arg1Of protein,that
R30 T30 T32 arg1Of protein,initiates
R31 T33 T32 arg2Of infection,initiates
R32 T35 T34 arg1Of protomer,Each
R33 T35 T36 arg1Of protomer,in
R34 T39 T36 arg2Of spike,in
R35 T39 T37 arg1Of spike,the
R36 T39 T38 arg1Of spike,trimeric
R37 T35 T40 arg1Of protomer,has
R38 T43 T40 arg2Of sites,has
R39 T43 T41 arg1Of sites,22
R40 T43 T42 arg1Of sites,glycosylation
R41 T48 T44 arg1Of glycosylated,How
R42 T46 T45 arg1Of sites,these
R43 T46 T47 arg1Of sites,are
R44 T48 T47 arg2Of glycosylated,are
R45 T46 T48 arg2Of sites,glycosylated
R46 T44 T49 arg1Of How,may
R47 T50 T49 arg2Of affect,may
R48 T44 T50 arg1Of How,affect
R49 T51 T50 arg2Of which,affect
R50 T52 T51 arg1Of cells,which
R51 T54 T53 arg1Of virus,the
R52 T54 T55 arg1Of virus,can
R53 T56 T55 arg2Of infect,can
R54 T54 T56 arg1Of virus,infect
R55 T52 T56 arg2Of cells,infect
R56 T50 T57 arg1Of affect,and
R57 T59 T57 arg2Of shield,and
R58 T44 T58 arg1Of How,could
R59 T59 T58 arg2Of shield,could
R60 T44 T59 arg1Of How,shield
R61 T61 T59 arg2Of epitopes,shield
R62 T61 T60 arg1Of epitopes,some
R63 T61 T62 arg1Of epitopes,from
R64 T64 T62 arg2Of neutralization,from
R65 T64 T63 arg1Of neutralization,antibody
R66 T74 T65 arg1Of trimers,Watanabe
R67 T67 T66 arg1Of al.,et
R68 T65 T67 arg1Of Watanabe,al.
R69 T67 T68 arg2Of al.,expressed
R70 T68 T69 arg1Of expressed,and
R71 T70 T69 arg2Of purified,and
R72 T67 T70 arg2Of al.,purified
R73 T74 T71 arg1Of trimers,recombinant
R74 T74 T72 arg2Of trimers,glycosylated
R75 T74 T73 arg1Of trimers,spike
R77 T74 T76 arg1Of trimers,proteolysed
R78 T77 T76 arg2Of them,proteolysed
R79 T79 T76 arg3Of yield,proteolysed
R80 T79 T78 arg1Of yield,to
R81 T77 T79 arg1Of them,yield
R82 T80 T79 arg2Of glycopeptides,yield
R83 T80 T81 arg1Of glycopeptides,containing

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T2 4-11 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 152-157 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T4 215-223 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T5 345-358 Body_part denotes glycopeptides http://purl.org/sig/ont/fma/fma82784

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 4-11 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 345-358 Chemical denotes glycopeptides http://purl.obolibrary.org/obo/CHEBI_24396

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T4 38-101 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.
T5 102-239 Sentence denotes How these sites are glycosylated may affect which cells the virus can infect and could shield some epitopes from antibody neutralization.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 27-36 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
18 304-309 Gene denotes spike Gene:43740568
21 68-73 Gene denotes spike Gene:43740568
22 345-358 Chemical denotes glycopeptides MESH:D006020
25 27-36 Disease denotes infection MESH:D007239

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T1 81-94 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T1 81-94 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 81-94 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 38-101 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.
T5 102-239 Sentence denotes How these sites are glycosylated may affect which cells the virus can infect and could shield some epitopes from antibody neutralization.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
18 304-309 Gene denotes spike Gene:43740568
21 68-73 Gene denotes spike Gene:43740568
22 345-358 Chemical denotes glycopeptides MESH:D006020
25 27-36 Disease denotes infection MESH:D007239