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PMC:7199903 / 2016-2197 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 166-170 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 0-8 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T20 166-170 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 111-122 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T18 161-165 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T19 166-170 http://purl.obolibrary.org/obo/CL_0000000 denotes cell

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T316 0-10 NN denotes SARS-CoV-2
T317 11-15 VBZ denotes uses
T318 16-18 DT denotes an
T319 19-30 RB denotes extensively
T320 31-43 VBN denotes glycosylated
T321 44-49 NN denotes spike
T322 50-51 -LRB- denotes (
T323 51-52 NN denotes S
T324 52-53 -RRB- denotes )
T325 54-61 NN denotes protein
T326 62-66 WDT denotes that
T327 67-76 VBZ denotes protrudes
T328 77-81 IN denotes from
T329 82-85 DT denotes the
T330 86-91 JJ denotes viral
T331 92-99 NN denotes surface
T332 100-102 TO denotes to
T333 103-107 VB denotes bind
T334 108-110 TO denotes to
T335 111-133 JJ denotes angiotensin-converting
T336 134-140 NN denotes enzyme
T337 141-142 CD denotes 2
T338 143-144 -LRB- denotes (
T339 144-148 NN denotes ACE2
T340 148-149 -RRB- denotes )
T341 150-152 TO denotes to
T342 153-160 VB denotes mediate
T343 161-170 JJ denotes host-cell
T344 171-176 NN denotes entry
T345 177-178 -LRB- denotes (
T346 178-179 CD denotes 3
T347 179-180 -RRB- denotes )
R317 T325 T318 arg1Of protein,an
R318 T320 T319 arg1Of glycosylated,extensively
R319 T321 T320 arg1Of spike,glycosylated
R320 T325 T321 arg1Of protein,spike
R321 T321 T322 arg1Of spike,(
R322 T323 T322 arg2Of S,(
R323 T324 T322 arg3Of ),(
R324 T325 T326 arg1Of protein,that
R325 T325 T327 arg1Of protein,protrudes
R326 T327 T328 arg1Of protrudes,from
R314 T316 T317 arg1Of SARS-CoV-2,uses
R315 T325 T317 arg2Of protein,uses
R316 T333 T317 arg3Of bind,uses
R327 T331 T328 arg2Of surface,from
R328 T331 T329 arg1Of surface,the
R329 T331 T330 arg1Of surface,viral
R330 T333 T332 arg1Of bind,to
R331 T316 T333 arg1Of SARS-CoV-2,bind
R332 T333 T334 arg1Of bind,to
R333 T336 T334 arg2Of enzyme,to
R334 T336 T335 arg1Of enzyme,angiotensin-converting
R335 T336 T337 arg1Of enzyme,2
R336 T336 T338 arg1Of enzyme,(
R337 T339 T338 arg2Of ACE2,(
R338 T340 T338 arg3Of ),(
R339 T342 T341 arg1Of mediate,to
R340 T333 T341 modOf bind,to
R341 T344 T342 arg2Of entry,mediate
R342 T344 T343 arg1Of entry,host-cell
R343 T344 T345 arg1Of entry,(
R344 T346 T345 arg2Of 3,(
R345 T347 T345 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T12 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 166-170 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 111-122 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T18 0-10 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T19 0-181 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 0-10 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
85 44-49 Gene denotes spike Gene:43740568
86 51-52 Gene denotes S Gene:43740568
87 111-142 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 144-148 Gene denotes ACE2 Gene:59272
95 0-10 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T103 50-61 Protein denotes (S) protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T136 111-142 Protein denotes angiotensin-converting enzyme 2 https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1
T151 144-148 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-181 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
85 44-49 Gene denotes spike Gene:43740568
86 51-52 Gene denotes S Gene:43740568
87 111-142 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 144-148 Gene denotes ACE2 Gene:59272
95 0-10 Species denotes SARS-CoV-2 Tax:2697049