PMC:7199903 / 1834-2724
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T12 | 236-243 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T13 | 348-352 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T14 | 370-377 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T15 | 407-414 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T16 | 679-686 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T16 | 0-47 | Disease | denotes | Severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T17 | 49-57 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T18 | 106-114 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T19 | 171-180 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T20 | 182-190 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 348-352 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T21 | 381-382 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T22 | 487-489 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T23 | 503-511 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
T24 | 520-522 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T25 | 520-522 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T26 | 533-537 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4, 5 |
T27 | 690-691 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T10 | 236-243 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T11 | 293-304 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
T12 | 370-377 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T13 | 407-414 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T14 | 520-522 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T15 | 603-610 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T16 | 679-686 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17 | 76-84 | http://purl.obolibrary.org/obo/IDO_0000528 | denotes | pathogen |
T18 | 343-347 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
T19 | 348-352 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell |
T20 | 432-442 | http://purl.obolibrary.org/obo/BFO_0000034 | denotes | functional |
T21 | 590-594 | http://purl.obolibrary.org/obo/IDO_0000531 | denotes | host |
T22 | 666-671 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
LitCovid-sample-Enju
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T282 | 0-6 | JJ | denotes | Severe |
T283 | 7-12 | JJ | denotes | acute |
T284 | 13-24 | JJ | denotes | respiratory |
T285 | 25-33 | NN | denotes | syndrome |
T286 | 34-45 | NN | denotes | coronavirus |
T287 | 46-47 | CD | denotes | 2 |
T288 | 48-49 | -LRB- | denotes | ( |
T289 | 49-59 | NN | denotes | SARS-CoV-2 |
T290 | 59-60 | -RRB- | denotes | ) |
T291 | 60-61 | -COMMA- | denotes | , |
T292 | 62-65 | DT | denotes | the |
T293 | 66-75 | JJ | denotes | causative |
T294 | 76-84 | NN | denotes | pathogen |
T295 | 85-87 | IN | denotes | of |
T296 | 88-99 | NN | denotes | coronavirus |
T297 | 100-104 | CD | denotes | 2019 |
T298 | 105-106 | -LRB- | denotes | ( |
T299 | 106-114 | NN | denotes | COVID-19 |
T300 | 114-115 | -RRB- | denotes | ) |
T301 | 116-117 | -LRB- | denotes | ( |
T302 | 117-118 | CD | denotes | 1 |
T303 | 118-119 | -COMMA- | denotes | , |
T304 | 120-121 | CD | denotes | 2 |
T305 | 121-122 | -RRB- | denotes | ) |
T306 | 122-123 | -COMMA- | denotes | , |
T307 | 124-131 | VBZ | denotes | induces |
T308 | 132-137 | NN | denotes | fever |
T309 | 137-138 | -COMMA- | denotes | , |
T310 | 139-145 | JJ | denotes | severe |
T311 | 146-157 | JJ | denotes | respiratory |
T312 | 158-165 | NN | denotes | illness |
T313 | 165-166 | -COMMA- | denotes | , |
T314 | 167-170 | CC | denotes | and |
T315 | 171-180 | NN | denotes | pneumonia |
T316 | 182-192 | NN | denotes | SARS-CoV-2 |
T317 | 193-197 | VBZ | denotes | uses |
T318 | 198-200 | DT | denotes | an |
T319 | 201-212 | RB | denotes | extensively |
T320 | 213-225 | VBN | denotes | glycosylated |
T321 | 226-231 | NN | denotes | spike |
T322 | 232-233 | -LRB- | denotes | ( |
T323 | 233-234 | NN | denotes | S |
T324 | 234-235 | -RRB- | denotes | ) |
T325 | 236-243 | NN | denotes | protein |
T326 | 244-248 | WDT | denotes | that |
T327 | 249-258 | VBZ | denotes | protrudes |
T328 | 259-263 | IN | denotes | from |
T329 | 264-267 | DT | denotes | the |
T330 | 268-273 | JJ | denotes | viral |
T331 | 274-281 | NN | denotes | surface |
T332 | 282-284 | TO | denotes | to |
T333 | 285-289 | VB | denotes | bind |
T334 | 290-292 | TO | denotes | to |
T335 | 293-315 | JJ | denotes | angiotensin-converting |
T336 | 316-322 | NN | denotes | enzyme |
T337 | 323-324 | CD | denotes | 2 |
T338 | 325-326 | -LRB- | denotes | ( |
T339 | 326-330 | NN | denotes | ACE2 |
T340 | 330-331 | -RRB- | denotes | ) |
T341 | 332-334 | TO | denotes | to |
T342 | 335-342 | VB | denotes | mediate |
T343 | 343-352 | JJ | denotes | host-cell |
T344 | 353-358 | NN | denotes | entry |
T345 | 359-360 | -LRB- | denotes | ( |
T346 | 360-361 | CD | denotes | 3 |
T347 | 361-362 | -RRB- | denotes | ) |
T348 | 364-367 | DT | denotes | The |
T349 | 368-369 | NN | denotes | S |
T350 | 370-377 | NN | denotes | protein |
T351 | 378-380 | VBZ | denotes | is |
T352 | 381-382 | DT | denotes | a |
T353 | 383-391 | JJ | denotes | trimeric |
T354 | 392-397 | NN | denotes | class |
T355 | 398-399 | CD | denotes | I |
T356 | 400-406 | NN | denotes | fusion |
T357 | 407-414 | NN | denotes | protein |
T358 | 414-415 | -COMMA- | denotes | , |
T359 | 416-424 | VBN | denotes | composed |
T360 | 425-427 | IN | denotes | of |
T361 | 428-431 | CD | denotes | two |
T362 | 432-442 | JJ | denotes | functional |
T363 | 443-451 | NNS | denotes | subunits |
T364 | 451-452 | -COMMA- | denotes | , |
T365 | 453-464 | JJ | denotes | responsible |
T366 | 465-468 | IN | denotes | for |
T367 | 469-477 | NN | denotes | receptor |
T368 | 478-485 | NN | denotes | binding |
T369 | 486-487 | -LRB- | denotes | ( |
T370 | 487-489 | NN | denotes | S1 |
T371 | 490-497 | NN | denotes | subunit |
T372 | 497-498 | -RRB- | denotes | ) |
T373 | 499-502 | CC | denotes | and |
T374 | 503-511 | NN | denotes | membrane |
T375 | 512-518 | NN | denotes | fusion |
T376 | 519-520 | -LRB- | denotes | ( |
T377 | 520-522 | NN | denotes | S2 |
T378 | 523-530 | NN | denotes | subunit |
T379 | 530-531 | -RRB- | denotes | ) |
T380 | 532-533 | -LRB- | denotes | ( |
T381 | 533-534 | CD | denotes | 4 |
T382 | 534-535 | -COMMA- | denotes | , |
T383 | 536-537 | CD | denotes | 5 |
T384 | 537-538 | -RRB- | denotes | ) |
T385 | 540-543 | DT | denotes | The |
T386 | 544-551 | NN | denotes | surface |
T387 | 552-554 | IN | denotes | of |
T388 | 555-558 | DT | denotes | the |
T389 | 559-567 | NN | denotes | envelope |
T390 | 568-573 | NN | denotes | spike |
T391 | 574-576 | VBZ | denotes | is |
T392 | 577-586 | VBN | denotes | dominated |
T393 | 587-589 | IN | denotes | by |
T394 | 590-602 | JJ | denotes | host-derived |
T395 | 603-610 | NNS | denotes | glycans |
T396 | 610-611 | -COMMA- | denotes | , |
T397 | 612-616 | IN | denotes | with |
T398 | 617-621 | DT | denotes | each |
T399 | 622-628 | NN | denotes | trimer |
T400 | 629-639 | VBG | denotes | displaying |
T401 | 640-642 | CD | denotes | 66 |
T402 | 643-651 | JJ | denotes | N-linked |
T403 | 652-665 | NN | denotes | glycosylation |
T404 | 666-671 | NNS | denotes | sites |
T405 | 673-676 | DT | denotes | The |
T406 | 677-678 | NN | denotes | S |
T407 | 679-686 | NN | denotes | protein |
T408 | 687-689 | VBZ | denotes | is |
T409 | 690-691 | DT | denotes | a |
T410 | 692-695 | JJ | denotes | key |
T411 | 696-702 | NN | denotes | target |
T412 | 703-705 | IN | denotes | in |
T413 | 706-713 | NN | denotes | vaccine |
T414 | 714-720 | NN | denotes | design |
T415 | 721-728 | NNS | denotes | efforts |
T416 | 729-730 | -LRB- | denotes | ( |
T417 | 730-731 | CD | denotes | 6 |
T418 | 731-732 | -RRB- | denotes | ) |
T419 | 732-733 | -COMMA- | denotes | , |
T420 | 734-737 | CC | denotes | and |
T421 | 738-751 | VBG | denotes | understanding |
T422 | 752-755 | DT | denotes | the |
T423 | 756-769 | NN | denotes | glycosylation |
T424 | 770-772 | IN | denotes | of |
T425 | 773-784 | JJ | denotes | recombinant |
T426 | 785-790 | JJ | denotes | viral |
T427 | 791-797 | NNS | denotes | spikes |
T428 | 798-801 | MD | denotes | can |
T429 | 802-808 | VB | denotes | reveal |
T430 | 809-820 | JJ | denotes | fundamental |
T431 | 821-829 | NNS | denotes | features |
T432 | 830-832 | IN | denotes | of |
T433 | 833-838 | JJ | denotes | viral |
T434 | 839-846 | NN | denotes | biology |
T435 | 847-850 | CC | denotes | and |
T436 | 851-856 | NN | denotes | guide |
T437 | 857-864 | NN | denotes | vaccine |
T438 | 865-871 | NN | denotes | design |
T439 | 872-882 | NNS | denotes | strategies |
T440 | 883-884 | -LRB- | denotes | ( |
T441 | 884-885 | CD | denotes | 7 |
T442 | 885-886 | -COMMA- | denotes | , |
T443 | 887-888 | CD | denotes | 8 |
T444 | 888-889 | -RRB- | denotes | ) |
R281 | T286 | T282 | arg1Of | coronavirus,Severe |
R282 | T286 | T283 | arg1Of | coronavirus,acute |
R317 | T325 | T318 | arg1Of | protein,an |
R318 | T320 | T319 | arg1Of | glycosylated,extensively |
R319 | T321 | T320 | arg1Of | spike,glycosylated |
R320 | T325 | T321 | arg1Of | protein,spike |
R321 | T321 | T322 | arg1Of | spike,( |
R322 | T323 | T322 | arg2Of | S,( |
R323 | T324 | T322 | arg3Of | ),( |
R324 | T325 | T326 | arg1Of | protein,that |
R325 | T325 | T327 | arg1Of | protein,protrudes |
R326 | T327 | T328 | arg1Of | protrudes,from |
R365 | T368 | T367 | arg1Of | binding,receptor |
R366 | T368 | T369 | arg1Of | binding,( |
R430 | T431 | T432 | arg1Of | features,of |
R431 | T434 | T432 | arg2Of | biology,of |
R432 | T434 | T433 | arg1Of | biology,viral |
R433 | T431 | T435 | arg1Of | features,and |
R434 | T439 | T435 | arg2Of | strategies,and |
R435 | T439 | T436 | arg1Of | strategies,guide |
R436 | T439 | T437 | arg1Of | strategies,vaccine |
R437 | T439 | T438 | arg1Of | strategies,design |
R438 | T439 | T440 | arg1Of | strategies,( |
R439 | T441 | T440 | arg2Of | 7,( |
R440 | T444 | T440 | arg3Of | ),( |
R441 | T441 | T442 | arg1Of | 7,"," |
R442 | T443 | T442 | arg2Of | 8,"," |
R283 | T286 | T284 | arg1Of | coronavirus,respiratory |
R284 | T286 | T285 | arg1Of | coronavirus,syndrome |
R285 | T286 | T287 | arg1Of | coronavirus,2 |
R286 | T286 | T288 | arg1Of | coronavirus,( |
R287 | T289 | T288 | arg2Of | SARS-CoV-2,( |
R288 | T290 | T288 | arg3Of | ),( |
R289 | T286 | T291 | arg1Of | coronavirus,"," |
R290 | T294 | T291 | arg2Of | pathogen,"," |
R291 | T294 | T292 | arg1Of | pathogen,the |
R292 | T294 | T293 | arg1Of | pathogen,causative |
R293 | T294 | T295 | arg1Of | pathogen,of |
R294 | T296 | T295 | arg2Of | coronavirus,of |
R295 | T296 | T297 | arg1Of | coronavirus,2019 |
R296 | T296 | T298 | arg1Of | coronavirus,( |
R297 | T299 | T298 | arg2Of | COVID-19,( |
R298 | T300 | T298 | arg3Of | ),( |
R299 | T296 | T301 | arg1Of | coronavirus,( |
R300 | T303 | T301 | arg2Of | ",",( |
R301 | T305 | T301 | arg3Of | ),( |
R302 | T302 | T303 | arg1Of | 1,"," |
R303 | T304 | T303 | arg2Of | 2,"," |
R304 | T307 | T306 | arg1Of | induces,"," |
R305 | T286 | T307 | arg1Of | coronavirus,induces |
R306 | T314 | T307 | arg2Of | and,induces |
R307 | T308 | T309 | arg1Of | fever,"," |
R308 | T312 | T309 | arg2Of | illness,"," |
R309 | T312 | T310 | arg1Of | illness,severe |
R310 | T312 | T311 | arg1Of | illness,respiratory |
R311 | T314 | T313 | arg1Of | and,"," |
R312 | T309 | T314 | arg1Of | ",",and |
R313 | T315 | T314 | arg2Of | pneumonia,and |
R314 | T316 | T317 | arg1Of | SARS-CoV-2,uses |
R315 | T325 | T317 | arg2Of | protein,uses |
R316 | T333 | T317 | arg3Of | bind,uses |
R327 | T331 | T328 | arg2Of | surface,from |
R328 | T331 | T329 | arg1Of | surface,the |
R329 | T331 | T330 | arg1Of | surface,viral |
R330 | T333 | T332 | arg1Of | bind,to |
R331 | T316 | T333 | arg1Of | SARS-CoV-2,bind |
R332 | T333 | T334 | arg1Of | bind,to |
R333 | T336 | T334 | arg2Of | enzyme,to |
R334 | T336 | T335 | arg1Of | enzyme,angiotensin-converting |
R335 | T336 | T337 | arg1Of | enzyme,2 |
R336 | T336 | T338 | arg1Of | enzyme,( |
R337 | T339 | T338 | arg2Of | ACE2,( |
R338 | T340 | T338 | arg3Of | ),( |
R339 | T342 | T341 | arg1Of | mediate,to |
R340 | T333 | T341 | modOf | bind,to |
R341 | T344 | T342 | arg2Of | entry,mediate |
R342 | T344 | T343 | arg1Of | entry,host-cell |
R343 | T344 | T345 | arg1Of | entry,( |
R344 | T346 | T345 | arg2Of | 3,( |
R345 | T347 | T345 | arg3Of | ),( |
R346 | T350 | T348 | arg1Of | protein,The |
R347 | T350 | T349 | arg1Of | protein,S |
R348 | T350 | T351 | arg1Of | protein,is |
R349 | T357 | T351 | arg2Of | protein,is |
R350 | T357 | T352 | arg1Of | protein,a |
R351 | T357 | T353 | arg1Of | protein,trimeric |
R352 | T357 | T354 | arg1Of | protein,class |
R353 | T357 | T355 | arg1Of | protein,I |
R354 | T357 | T356 | arg1Of | protein,fusion |
R355 | T357 | T358 | arg1Of | protein,"," |
R356 | T357 | T359 | arg2Of | protein,composed |
R357 | T359 | T360 | arg1Of | composed,of |
R358 | T363 | T360 | arg2Of | subunits,of |
R359 | T363 | T361 | arg1Of | subunits,two |
R360 | T363 | T362 | arg1Of | subunits,functional |
R361 | T357 | T364 | arg1Of | protein,"," |
R362 | T357 | T365 | arg1Of | protein,responsible |
R363 | T365 | T366 | arg1Of | responsible,for |
R364 | T373 | T366 | arg2Of | and,for |
R367 | T371 | T369 | arg2Of | subunit,( |
R368 | T372 | T369 | arg3Of | ),( |
R369 | T371 | T370 | arg1Of | subunit,S1 |
R370 | T368 | T373 | arg1Of | binding,and |
R371 | T375 | T373 | arg2Of | fusion,and |
R372 | T375 | T374 | arg1Of | fusion,membrane |
R373 | T375 | T376 | arg1Of | fusion,( |
R374 | T378 | T376 | arg2Of | subunit,( |
R375 | T379 | T376 | arg3Of | ),( |
R376 | T378 | T377 | arg1Of | subunit,S2 |
R377 | T357 | T380 | arg1Of | protein,( |
R378 | T381 | T380 | arg2Of | 4,( |
R379 | T384 | T380 | arg3Of | ),( |
R380 | T381 | T382 | arg1Of | 4,"," |
R381 | T383 | T382 | arg2Of | 5,"," |
R382 | T386 | T385 | arg1Of | surface,The |
R383 | T386 | T387 | arg1Of | surface,of |
R384 | T390 | T387 | arg2Of | spike,of |
R385 | T390 | T388 | arg1Of | spike,the |
R386 | T390 | T389 | arg1Of | spike,envelope |
R387 | T386 | T391 | arg1Of | surface,is |
R388 | T392 | T391 | arg2Of | dominated,is |
R389 | T386 | T392 | arg2Of | surface,dominated |
R390 | T392 | T393 | arg1Of | dominated,by |
R391 | T395 | T393 | arg2Of | glycans,by |
R392 | T395 | T394 | arg1Of | glycans,host-derived |
R393 | T392 | T396 | arg1Of | dominated,"," |
R394 | T392 | T397 | arg1Of | dominated,with |
R395 | T399 | T397 | arg2Of | trimer,with |
R396 | T400 | T397 | arg3Of | displaying,with |
R397 | T399 | T398 | arg1Of | trimer,each |
R398 | T399 | T400 | arg1Of | trimer,displaying |
R399 | T404 | T400 | arg2Of | sites,displaying |
R400 | T404 | T401 | arg1Of | sites,66 |
R401 | T404 | T402 | arg1Of | sites,N-linked |
R402 | T404 | T403 | arg1Of | sites,glycosylation |
R403 | T407 | T405 | arg1Of | protein,The |
R404 | T407 | T406 | arg1Of | protein,S |
R405 | T407 | T408 | arg1Of | protein,is |
R406 | T411 | T408 | arg2Of | target,is |
R407 | T411 | T409 | arg1Of | target,a |
R408 | T411 | T410 | arg1Of | target,key |
R409 | T411 | T412 | arg1Of | target,in |
R410 | T415 | T412 | arg2Of | efforts,in |
R411 | T415 | T413 | arg1Of | efforts,vaccine |
R412 | T415 | T414 | arg1Of | efforts,design |
R413 | T415 | T416 | arg1Of | efforts,( |
R414 | T417 | T416 | arg2Of | 6,( |
R415 | T418 | T416 | arg3Of | ),( |
R416 | T420 | T419 | arg1Of | and,"," |
R417 | T408 | T420 | arg1Of | is,and |
R418 | T429 | T420 | arg2Of | reveal,and |
R419 | T423 | T421 | arg2Of | glycosylation,understanding |
R420 | T423 | T422 | arg1Of | glycosylation,the |
R421 | T423 | T424 | arg1Of | glycosylation,of |
R422 | T427 | T424 | arg2Of | spikes,of |
R423 | T427 | T425 | arg1Of | spikes,recombinant |
R424 | T427 | T426 | arg1Of | spikes,viral |
R425 | T421 | T428 | arg1Of | understanding,can |
R426 | T429 | T428 | arg2Of | reveal,can |
R427 | T421 | T429 | arg1Of | understanding,reveal |
R428 | T435 | T429 | arg2Of | and,reveal |
R429 | T431 | T430 | arg1Of | features,fundamental |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T12 | 236-243 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T13 | 348-352 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T14 | 370-377 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T15 | 407-414 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T16 | 679-686 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T8 | 236-243 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T9 | 293-304 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
T10 | 370-377 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T11 | 407-414 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T12 | 603-610 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T13 | 679-686 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T15 | 0-47 | Species | denotes | Severe acute respiratory syndrome coronavirus 2 | NCBItxid:2697049 |
T16 | 49-59 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
T17 | 106-114 | Species | denotes | COVID-19 | NCBItxid:2697049 |
T18 | 182-192 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18 | 0-181 | Sentence | denotes | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative pathogen of coronavirus 2019 (COVID-19) (1, 2), induces fever, severe respiratory illness, and pneumonia. |
T19 | 182-363 | Sentence | denotes | SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3). |
T20 | 364-539 | Sentence | denotes | The S protein is a trimeric class I fusion protein, composed of two functional subunits, responsible for receptor binding (S1 subunit) and membrane fusion (S2 subunit) (4, 5). |
T21 | 540-672 | Sentence | denotes | The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites. |
T22 | 673-890 | Sentence | denotes | The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8). |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T14 | 0-47 | Disease | denotes | Severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T15 | 49-59 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T16 | 106-114 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T17 | 171-180 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T18 | 182-192 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
100 | 146-165 | Disease | denotes | respiratory illness | MESH:D012140 |
101 | 171-180 | Disease | denotes | pneumonia | MESH:D011014 |
85 | 226-231 | Gene | denotes | spike | Gene:43740568 |
86 | 233-234 | Gene | denotes | S | Gene:43740568 |
87 | 293-324 | Gene | denotes | angiotensin-converting enzyme 2 | Gene:59272 |
88 | 326-330 | Gene | denotes | ACE2 | Gene:59272 |
89 | 568-573 | Gene | denotes | spike | Gene:43740568 |
90 | 677-686 | Gene | denotes | S protein | Gene:43740568 |
91 | 368-377 | Gene | denotes | S protein | Gene:43740568 |
94 | 88-104 | Species | denotes | coronavirus 2019 | Tax:2697049 |
95 | 182-192 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
96 | 603-610 | Chemical | denotes | glycans | MESH:D011134 |
97 | 643-644 | Chemical | denotes | N | MESH:D009584 |
98 | 106-114 | Disease | denotes | COVID-19 | MESH:C000657245 |
99 | 132-137 | Disease | denotes | fever | MESH:D005334 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T103 | 232-243 | Protein | denotes | (S) protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
T136 | 293-324 | Protein | denotes | angiotensin-converting enzyme 2 | https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1 |
T151 | 326-330 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
T152 | 368-377 | Protein | denotes | S protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
T185 | 677-686 | Protein | denotes | S protein | https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9 |
LitCovid-sample-PD-GO-BP-0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9 | 503-518 | http://purl.obolibrary.org/obo/GO_0061025 | denotes | membrane fusion |
T10 | 652-665 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T11 | 756-769 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T2 | 146-165 | Phenotype | denotes | respiratory illness | http://purl.obolibrary.org/obo/HP_0002086 |
T3 | 171-180 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T1 | 132-137 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
LitCovid-sample-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8 | 503-518 | http://purl.obolibrary.org/obo/GO_0061025 | denotes | membrane fusion |
T9 | 652-665 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T10 | 756-769 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8 | 503-518 | http://purl.obolibrary.org/obo/GO_0061025 | denotes | membrane fusion |
T9 | 643-665 | http://purl.obolibrary.org/obo/GO_0006487 | denotes | N-linked glycosylation |
T10 | 652-665 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
T11 | 756-769 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 132-137 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T2 | 146-165 | Phenotype | denotes | respiratory illness | http://purl.obolibrary.org/obo/HP_0002086 |
T3 | 171-180 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T18 | 0-181 | Sentence | denotes | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative pathogen of coronavirus 2019 (COVID-19) (1, 2), induces fever, severe respiratory illness, and pneumonia. |
T19 | 182-363 | Sentence | denotes | SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3). |
T20 | 364-539 | Sentence | denotes | The S protein is a trimeric class I fusion protein, composed of two functional subunits, responsible for receptor binding (S1 subunit) and membrane fusion (S2 subunit) (4, 5). |
T21 | 540-672 | Sentence | denotes | The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites. |
T22 | 673-890 | Sentence | denotes | The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8). |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
85 | 226-231 | Gene | denotes | spike | Gene:43740568 |
86 | 233-234 | Gene | denotes | S | Gene:43740568 |
87 | 293-324 | Gene | denotes | angiotensin-converting enzyme 2 | Gene:59272 |
88 | 326-330 | Gene | denotes | ACE2 | Gene:59272 |
89 | 568-573 | Gene | denotes | spike | Gene:43740568 |
90 | 677-686 | Gene | denotes | S protein | Gene:43740568 |
91 | 368-377 | Gene | denotes | S protein | Gene:43740568 |
92 | 0-47 | Species | denotes | Severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
93 | 49-59 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
94 | 88-104 | Species | denotes | coronavirus 2019 | Tax:2697049 |
95 | 182-192 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
96 | 603-610 | Chemical | denotes | glycans | MESH:D011134 |
97 | 643-644 | Chemical | denotes | N | MESH:D009584 |
98 | 106-114 | Disease | denotes | COVID-19 | MESH:C000657245 |
99 | 132-137 | Disease | denotes | fever | MESH:D005334 |
100 | 146-165 | Disease | denotes | respiratory illness | MESH:D012140 |
101 | 171-180 | Disease | denotes | pneumonia | MESH:D011014 |