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PMC:7199903 / 1834-2724 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 236-243 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 348-352 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 370-377 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T15 407-414 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 679-686 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 0-47 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T17 49-57 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 106-114 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 171-180 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 182-190 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T20 348-352 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T21 381-382 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 487-489 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T23 503-511 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T24 520-522 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T25 520-522 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T26 533-537 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T27 690-691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 236-243 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 293-304 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T12 370-377 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T13 407-414 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 520-522 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T15 603-610 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T16 679-686 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T17 76-84 http://purl.obolibrary.org/obo/IDO_0000528 denotes pathogen
T18 343-347 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T19 348-352 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T20 432-442 http://purl.obolibrary.org/obo/BFO_0000034 denotes functional
T21 590-594 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T22 666-671 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T282 0-6 JJ denotes Severe
T283 7-12 JJ denotes acute
T284 13-24 JJ denotes respiratory
T285 25-33 NN denotes syndrome
T286 34-45 NN denotes coronavirus
T287 46-47 CD denotes 2
T288 48-49 -LRB- denotes (
T289 49-59 NN denotes SARS-CoV-2
T290 59-60 -RRB- denotes )
T291 60-61 -COMMA- denotes ,
T292 62-65 DT denotes the
T293 66-75 JJ denotes causative
T294 76-84 NN denotes pathogen
T295 85-87 IN denotes of
T296 88-99 NN denotes coronavirus
T297 100-104 CD denotes 2019
T298 105-106 -LRB- denotes (
T299 106-114 NN denotes COVID-19
T300 114-115 -RRB- denotes )
T301 116-117 -LRB- denotes (
T302 117-118 CD denotes 1
T303 118-119 -COMMA- denotes ,
T304 120-121 CD denotes 2
T305 121-122 -RRB- denotes )
T306 122-123 -COMMA- denotes ,
T307 124-131 VBZ denotes induces
T308 132-137 NN denotes fever
T309 137-138 -COMMA- denotes ,
T310 139-145 JJ denotes severe
T311 146-157 JJ denotes respiratory
T312 158-165 NN denotes illness
T313 165-166 -COMMA- denotes ,
T314 167-170 CC denotes and
T315 171-180 NN denotes pneumonia
T316 182-192 NN denotes SARS-CoV-2
T317 193-197 VBZ denotes uses
T318 198-200 DT denotes an
T319 201-212 RB denotes extensively
T320 213-225 VBN denotes glycosylated
T321 226-231 NN denotes spike
T322 232-233 -LRB- denotes (
T323 233-234 NN denotes S
T324 234-235 -RRB- denotes )
T325 236-243 NN denotes protein
T326 244-248 WDT denotes that
T327 249-258 VBZ denotes protrudes
T328 259-263 IN denotes from
T329 264-267 DT denotes the
T330 268-273 JJ denotes viral
T331 274-281 NN denotes surface
T332 282-284 TO denotes to
T333 285-289 VB denotes bind
T334 290-292 TO denotes to
T335 293-315 JJ denotes angiotensin-converting
T336 316-322 NN denotes enzyme
T337 323-324 CD denotes 2
T338 325-326 -LRB- denotes (
T339 326-330 NN denotes ACE2
T340 330-331 -RRB- denotes )
T341 332-334 TO denotes to
T342 335-342 VB denotes mediate
T343 343-352 JJ denotes host-cell
T344 353-358 NN denotes entry
T345 359-360 -LRB- denotes (
T346 360-361 CD denotes 3
T347 361-362 -RRB- denotes )
T348 364-367 DT denotes The
T349 368-369 NN denotes S
T350 370-377 NN denotes protein
T351 378-380 VBZ denotes is
T352 381-382 DT denotes a
T353 383-391 JJ denotes trimeric
T354 392-397 NN denotes class
T355 398-399 CD denotes I
T356 400-406 NN denotes fusion
T357 407-414 NN denotes protein
T358 414-415 -COMMA- denotes ,
T359 416-424 VBN denotes composed
T360 425-427 IN denotes of
T361 428-431 CD denotes two
T362 432-442 JJ denotes functional
T363 443-451 NNS denotes subunits
T364 451-452 -COMMA- denotes ,
T365 453-464 JJ denotes responsible
T366 465-468 IN denotes for
T367 469-477 NN denotes receptor
T368 478-485 NN denotes binding
T369 486-487 -LRB- denotes (
T370 487-489 NN denotes S1
T371 490-497 NN denotes subunit
T372 497-498 -RRB- denotes )
T373 499-502 CC denotes and
T374 503-511 NN denotes membrane
T375 512-518 NN denotes fusion
T376 519-520 -LRB- denotes (
T377 520-522 NN denotes S2
T378 523-530 NN denotes subunit
T379 530-531 -RRB- denotes )
T380 532-533 -LRB- denotes (
T381 533-534 CD denotes 4
T382 534-535 -COMMA- denotes ,
T383 536-537 CD denotes 5
T384 537-538 -RRB- denotes )
T385 540-543 DT denotes The
T386 544-551 NN denotes surface
T387 552-554 IN denotes of
T388 555-558 DT denotes the
T389 559-567 NN denotes envelope
T390 568-573 NN denotes spike
T391 574-576 VBZ denotes is
T392 577-586 VBN denotes dominated
T393 587-589 IN denotes by
T394 590-602 JJ denotes host-derived
T395 603-610 NNS denotes glycans
T396 610-611 -COMMA- denotes ,
T397 612-616 IN denotes with
T398 617-621 DT denotes each
T399 622-628 NN denotes trimer
T400 629-639 VBG denotes displaying
T401 640-642 CD denotes 66
T402 643-651 JJ denotes N-linked
T403 652-665 NN denotes glycosylation
T404 666-671 NNS denotes sites
T405 673-676 DT denotes The
T406 677-678 NN denotes S
T407 679-686 NN denotes protein
T408 687-689 VBZ denotes is
T409 690-691 DT denotes a
T410 692-695 JJ denotes key
T411 696-702 NN denotes target
T412 703-705 IN denotes in
T413 706-713 NN denotes vaccine
T414 714-720 NN denotes design
T415 721-728 NNS denotes efforts
T416 729-730 -LRB- denotes (
T417 730-731 CD denotes 6
T418 731-732 -RRB- denotes )
T419 732-733 -COMMA- denotes ,
T420 734-737 CC denotes and
T421 738-751 VBG denotes understanding
T422 752-755 DT denotes the
T423 756-769 NN denotes glycosylation
T424 770-772 IN denotes of
T425 773-784 JJ denotes recombinant
T426 785-790 JJ denotes viral
T427 791-797 NNS denotes spikes
T428 798-801 MD denotes can
T429 802-808 VB denotes reveal
T430 809-820 JJ denotes fundamental
T431 821-829 NNS denotes features
T432 830-832 IN denotes of
T433 833-838 JJ denotes viral
T434 839-846 NN denotes biology
T435 847-850 CC denotes and
T436 851-856 NN denotes guide
T437 857-864 NN denotes vaccine
T438 865-871 NN denotes design
T439 872-882 NNS denotes strategies
T440 883-884 -LRB- denotes (
T441 884-885 CD denotes 7
T442 885-886 -COMMA- denotes ,
T443 887-888 CD denotes 8
T444 888-889 -RRB- denotes )
R281 T286 T282 arg1Of coronavirus,Severe
R282 T286 T283 arg1Of coronavirus,acute
R317 T325 T318 arg1Of protein,an
R318 T320 T319 arg1Of glycosylated,extensively
R319 T321 T320 arg1Of spike,glycosylated
R320 T325 T321 arg1Of protein,spike
R321 T321 T322 arg1Of spike,(
R322 T323 T322 arg2Of S,(
R323 T324 T322 arg3Of ),(
R324 T325 T326 arg1Of protein,that
R325 T325 T327 arg1Of protein,protrudes
R326 T327 T328 arg1Of protrudes,from
R365 T368 T367 arg1Of binding,receptor
R366 T368 T369 arg1Of binding,(
R430 T431 T432 arg1Of features,of
R431 T434 T432 arg2Of biology,of
R432 T434 T433 arg1Of biology,viral
R433 T431 T435 arg1Of features,and
R434 T439 T435 arg2Of strategies,and
R435 T439 T436 arg1Of strategies,guide
R436 T439 T437 arg1Of strategies,vaccine
R437 T439 T438 arg1Of strategies,design
R438 T439 T440 arg1Of strategies,(
R439 T441 T440 arg2Of 7,(
R440 T444 T440 arg3Of ),(
R441 T441 T442 arg1Of 7,","
R442 T443 T442 arg2Of 8,","
R283 T286 T284 arg1Of coronavirus,respiratory
R284 T286 T285 arg1Of coronavirus,syndrome
R285 T286 T287 arg1Of coronavirus,2
R286 T286 T288 arg1Of coronavirus,(
R287 T289 T288 arg2Of SARS-CoV-2,(
R288 T290 T288 arg3Of ),(
R289 T286 T291 arg1Of coronavirus,","
R290 T294 T291 arg2Of pathogen,","
R291 T294 T292 arg1Of pathogen,the
R292 T294 T293 arg1Of pathogen,causative
R293 T294 T295 arg1Of pathogen,of
R294 T296 T295 arg2Of coronavirus,of
R295 T296 T297 arg1Of coronavirus,2019
R296 T296 T298 arg1Of coronavirus,(
R297 T299 T298 arg2Of COVID-19,(
R298 T300 T298 arg3Of ),(
R299 T296 T301 arg1Of coronavirus,(
R300 T303 T301 arg2Of ",",(
R301 T305 T301 arg3Of ),(
R302 T302 T303 arg1Of 1,","
R303 T304 T303 arg2Of 2,","
R304 T307 T306 arg1Of induces,","
R305 T286 T307 arg1Of coronavirus,induces
R306 T314 T307 arg2Of and,induces
R307 T308 T309 arg1Of fever,","
R308 T312 T309 arg2Of illness,","
R309 T312 T310 arg1Of illness,severe
R310 T312 T311 arg1Of illness,respiratory
R311 T314 T313 arg1Of and,","
R312 T309 T314 arg1Of ",",and
R313 T315 T314 arg2Of pneumonia,and
R314 T316 T317 arg1Of SARS-CoV-2,uses
R315 T325 T317 arg2Of protein,uses
R316 T333 T317 arg3Of bind,uses
R327 T331 T328 arg2Of surface,from
R328 T331 T329 arg1Of surface,the
R329 T331 T330 arg1Of surface,viral
R330 T333 T332 arg1Of bind,to
R331 T316 T333 arg1Of SARS-CoV-2,bind
R332 T333 T334 arg1Of bind,to
R333 T336 T334 arg2Of enzyme,to
R334 T336 T335 arg1Of enzyme,angiotensin-converting
R335 T336 T337 arg1Of enzyme,2
R336 T336 T338 arg1Of enzyme,(
R337 T339 T338 arg2Of ACE2,(
R338 T340 T338 arg3Of ),(
R339 T342 T341 arg1Of mediate,to
R340 T333 T341 modOf bind,to
R341 T344 T342 arg2Of entry,mediate
R342 T344 T343 arg1Of entry,host-cell
R343 T344 T345 arg1Of entry,(
R344 T346 T345 arg2Of 3,(
R345 T347 T345 arg3Of ),(
R346 T350 T348 arg1Of protein,The
R347 T350 T349 arg1Of protein,S
R348 T350 T351 arg1Of protein,is
R349 T357 T351 arg2Of protein,is
R350 T357 T352 arg1Of protein,a
R351 T357 T353 arg1Of protein,trimeric
R352 T357 T354 arg1Of protein,class
R353 T357 T355 arg1Of protein,I
R354 T357 T356 arg1Of protein,fusion
R355 T357 T358 arg1Of protein,","
R356 T357 T359 arg2Of protein,composed
R357 T359 T360 arg1Of composed,of
R358 T363 T360 arg2Of subunits,of
R359 T363 T361 arg1Of subunits,two
R360 T363 T362 arg1Of subunits,functional
R361 T357 T364 arg1Of protein,","
R362 T357 T365 arg1Of protein,responsible
R363 T365 T366 arg1Of responsible,for
R364 T373 T366 arg2Of and,for
R367 T371 T369 arg2Of subunit,(
R368 T372 T369 arg3Of ),(
R369 T371 T370 arg1Of subunit,S1
R370 T368 T373 arg1Of binding,and
R371 T375 T373 arg2Of fusion,and
R372 T375 T374 arg1Of fusion,membrane
R373 T375 T376 arg1Of fusion,(
R374 T378 T376 arg2Of subunit,(
R375 T379 T376 arg3Of ),(
R376 T378 T377 arg1Of subunit,S2
R377 T357 T380 arg1Of protein,(
R378 T381 T380 arg2Of 4,(
R379 T384 T380 arg3Of ),(
R380 T381 T382 arg1Of 4,","
R381 T383 T382 arg2Of 5,","
R382 T386 T385 arg1Of surface,The
R383 T386 T387 arg1Of surface,of
R384 T390 T387 arg2Of spike,of
R385 T390 T388 arg1Of spike,the
R386 T390 T389 arg1Of spike,envelope
R387 T386 T391 arg1Of surface,is
R388 T392 T391 arg2Of dominated,is
R389 T386 T392 arg2Of surface,dominated
R390 T392 T393 arg1Of dominated,by
R391 T395 T393 arg2Of glycans,by
R392 T395 T394 arg1Of glycans,host-derived
R393 T392 T396 arg1Of dominated,","
R394 T392 T397 arg1Of dominated,with
R395 T399 T397 arg2Of trimer,with
R396 T400 T397 arg3Of displaying,with
R397 T399 T398 arg1Of trimer,each
R398 T399 T400 arg1Of trimer,displaying
R399 T404 T400 arg2Of sites,displaying
R400 T404 T401 arg1Of sites,66
R401 T404 T402 arg1Of sites,N-linked
R402 T404 T403 arg1Of sites,glycosylation
R403 T407 T405 arg1Of protein,The
R404 T407 T406 arg1Of protein,S
R405 T407 T408 arg1Of protein,is
R406 T411 T408 arg2Of target,is
R407 T411 T409 arg1Of target,a
R408 T411 T410 arg1Of target,key
R409 T411 T412 arg1Of target,in
R410 T415 T412 arg2Of efforts,in
R411 T415 T413 arg1Of efforts,vaccine
R412 T415 T414 arg1Of efforts,design
R413 T415 T416 arg1Of efforts,(
R414 T417 T416 arg2Of 6,(
R415 T418 T416 arg3Of ),(
R416 T420 T419 arg1Of and,","
R417 T408 T420 arg1Of is,and
R418 T429 T420 arg2Of reveal,and
R419 T423 T421 arg2Of glycosylation,understanding
R420 T423 T422 arg1Of glycosylation,the
R421 T423 T424 arg1Of glycosylation,of
R422 T427 T424 arg2Of spikes,of
R423 T427 T425 arg1Of spikes,recombinant
R424 T427 T426 arg1Of spikes,viral
R425 T421 T428 arg1Of understanding,can
R426 T429 T428 arg2Of reveal,can
R427 T421 T429 arg1Of understanding,reveal
R428 T435 T429 arg2Of and,reveal
R429 T431 T430 arg1Of features,fundamental

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T12 236-243 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 348-352 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T14 370-377 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T15 407-414 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 679-686 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 236-243 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 293-304 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T10 370-377 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 407-414 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T12 603-610 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T13 679-686 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T15 0-47 Species denotes Severe acute respiratory syndrome coronavirus 2 NCBItxid:2697049
T16 49-59 Species denotes SARS-CoV-2 NCBItxid:2697049
T17 106-114 Species denotes COVID-19 NCBItxid:2697049
T18 182-192 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T18 0-181 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative pathogen of coronavirus 2019 (COVID-19) (1, 2), induces fever, severe respiratory illness, and pneumonia.
T19 182-363 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).
T20 364-539 Sentence denotes The S protein is a trimeric class I fusion protein, composed of two functional subunits, responsible for receptor binding (S1 subunit) and membrane fusion (S2 subunit) (4, 5).
T21 540-672 Sentence denotes The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites.
T22 673-890 Sentence denotes The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8).

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T14 0-47 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T15 49-59 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T16 106-114 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 171-180 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 182-192 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
100 146-165 Disease denotes respiratory illness MESH:D012140
101 171-180 Disease denotes pneumonia MESH:D011014
85 226-231 Gene denotes spike Gene:43740568
86 233-234 Gene denotes S Gene:43740568
87 293-324 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 326-330 Gene denotes ACE2 Gene:59272
89 568-573 Gene denotes spike Gene:43740568
90 677-686 Gene denotes S protein Gene:43740568
91 368-377 Gene denotes S protein Gene:43740568
94 88-104 Species denotes coronavirus 2019 Tax:2697049
95 182-192 Species denotes SARS-CoV-2 Tax:2697049
96 603-610 Chemical denotes glycans MESH:D011134
97 643-644 Chemical denotes N MESH:D009584
98 106-114 Disease denotes COVID-19 MESH:C000657245
99 132-137 Disease denotes fever MESH:D005334

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T103 232-243 Protein denotes (S) protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T136 293-324 Protein denotes angiotensin-converting enzyme 2 https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1
T151 326-330 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6
T152 368-377 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T185 677-686 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T9 503-518 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T10 652-665 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 756-769 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 146-165 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 171-180 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T1 132-137 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T8 503-518 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T9 652-665 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T10 756-769 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T8 503-518 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T9 643-665 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T10 652-665 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 756-769 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 132-137 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 146-165 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 171-180 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-181 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative pathogen of coronavirus 2019 (COVID-19) (1, 2), induces fever, severe respiratory illness, and pneumonia.
T19 182-363 Sentence denotes SARS-CoV-2 uses an extensively glycosylated spike (S) protein that protrudes from the viral surface to bind to angiotensin-converting enzyme 2 (ACE2) to mediate host-cell entry (3).
T20 364-539 Sentence denotes The S protein is a trimeric class I fusion protein, composed of two functional subunits, responsible for receptor binding (S1 subunit) and membrane fusion (S2 subunit) (4, 5).
T21 540-672 Sentence denotes The surface of the envelope spike is dominated by host-derived glycans, with each trimer displaying 66 N-linked glycosylation sites.
T22 673-890 Sentence denotes The S protein is a key target in vaccine design efforts (6), and understanding the glycosylation of recombinant viral spikes can reveal fundamental features of viral biology and guide vaccine design strategies (7, 8).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
85 226-231 Gene denotes spike Gene:43740568
86 233-234 Gene denotes S Gene:43740568
87 293-324 Gene denotes angiotensin-converting enzyme 2 Gene:59272
88 326-330 Gene denotes ACE2 Gene:59272
89 568-573 Gene denotes spike Gene:43740568
90 677-686 Gene denotes S protein Gene:43740568
91 368-377 Gene denotes S protein Gene:43740568
92 0-47 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
93 49-59 Species denotes SARS-CoV-2 Tax:2697049
94 88-104 Species denotes coronavirus 2019 Tax:2697049
95 182-192 Species denotes SARS-CoV-2 Tax:2697049
96 603-610 Chemical denotes glycans MESH:D011134
97 643-644 Chemical denotes N MESH:D009584
98 106-114 Disease denotes COVID-19 MESH:C000657245
99 132-137 Disease denotes fever MESH:D005334
100 146-165 Disease denotes respiratory illness MESH:D012140
101 171-180 Disease denotes pneumonia MESH:D011014