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PMC:7199903 / 16163-18063 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T87 461-464 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T88 832-840 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T89 1030-1038 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T56 248-252 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T57 337-341 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T99 521-522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 1320-1321 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 1418-1419 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T102 1620-1621 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 1814-1815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T160 832-840 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T161 973-984 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T162 1105-1116 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T163 1468-1470 Chemical denotes CC http://purl.obolibrary.org/obo/CHEBI_28940

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T72 1538-1550 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T1852 0-15 NNS denotes Acknowledgments
T43935 16-18 PRP denotes We
T93371 19-24 VBP denotes thank
T35990 25-27 NNP denotes M.
T59026 28-33 NNP denotes Dixon
T19179 34-37 CC denotes and
T91274 38-40 NNP denotes M.
T59323 41-54 NNP denotes Gowland-Pryde
T55314 55-58 IN denotes for
T37056 59-69 VBG denotes supporting
T86842 70-73 PRP-DOLLAR- denotes our
T19814 74-78 NN denotes work
T80410 79-81 IN denotes on
T76062 82-86 DT denotes this
T52427 87-94 NN denotes project
T97359 95-101 IN denotes during
T59663 102-105 DT denotes the
T16507 106-118 NNS denotes difficulties
T95590 119-126 VBG denotes arising
T85495 127-131 IN denotes from
T30319 132-135 DT denotes the
T82565 136-144 JJ denotes pandemic
T38374 145-148 CC denotes and
T65104 149-151 NNP denotes G.
T32012 152-156 NNP denotes Ould
T50942 157-160 IN denotes for
T30294 161-169 JJ denotes critical
T75990 170-177 NN denotes reading
T44821 178-180 IN denotes of
T46959 181-184 DT denotes the
T3549 185-195 NN denotes manuscript
T73626 197-204 NNP denotes Funding
T96678 204-205 -COLON- denotes :
T71770 206-210 DT denotes This
T32670 211-215 NN denotes work
T53456 216-219 VBD denotes was
T24413 220-226 VBN denotes funded
T52314 227-229 IN denotes by
T41147 230-233 DT denotes the
T10764 234-247 NNP denotes International
T50064 248-252 NNP denotes AIDS
T21205 253-260 NNP denotes Vaccine
T88914 261-271 NNP denotes Initiative
T65125 271-272 -COMMA- denotes ,
T68191 273-277 NNP denotes Bill
T38094 278-281 CC denotes and
T94876 282-289 NNP denotes Melinda
T96825 290-295 NNP denotes Gates
T28706 296-306 NNP denotes Foundation
T65475 307-314 IN denotes through
T50677 315-318 DT denotes the
T3738 319-332 NN denotes Collaboration
T66663 333-336 IN denotes for
T35657 337-341 NNP denotes AIDS
T48085 342-349 NNP denotes Vaccine
T43413 350-359 NNP denotes Discovery
T15064 360-361 -LRB- denotes (
T72497 361-371 NN denotes OPP1084519
T81469 372-375 CC denotes and
T55228 376-383 CD denotes 1196345
T99587 384-386 TO denotes to
T78418 387-391 NNP denotes M.C.
T39479 391-392 -RRB- denotes )
T6018 392-393 -COMMA- denotes ,
T29775 394-397 DT denotes the
T45283 398-403 NN denotes NIAID
T93814 404-405 -LRB- denotes (
T81400 405-417 NN denotes R01-AI127521
T46165 418-420 TO denotes to
T86993 421-427 NNP denotes J.S.M.
T95661 427-428 -RRB- denotes )
T97850 428-429 -COMMA- denotes ,
T96534 430-433 CC denotes and
T89902 434-437 DT denotes the
T11178 438-445 NNP denotes Scripps
T74764 446-456 NNP denotes Consortium
T25629 457-460 IN denotes for
T19310 461-464 NNP denotes HIV
T91871 465-472 NNP denotes Vaccine
T16501 473-484 NNP denotes Development
T68793 485-486 -LRB- denotes (
T40104 486-491 NN denotes CHAVD
T97000 491-492 -RRB- denotes )
T13011 493-494 -LRB- denotes (
T52113 494-502 NN denotes AI144462
T63240 503-505 TO denotes to
T20653 506-510 NNP denotes M.C.
T52833 510-511 -RRB- denotes )
T18403 513-517 NNP denotes M.C.
T74779 518-520 VBZ denotes is
T11366 521-522 DT denotes a
T71123 523-536 NNP denotes Supernumerary
T73977 537-543 NNP denotes Fellow
T87878 544-546 IN denotes of
T7407 547-552 NNP denotes Oriel
T52677 553-560 NNP denotes College
T83803 560-561 -COMMA- denotes ,
T3931 562-568 NNP denotes Oxford
T43912 568-569 -COMMA- denotes ,
T27493 570-573 CC denotes and
T23825 574-583 NN denotes professor
T3538 584-591 NN denotes adjunct
T45328 592-594 IN denotes at
T19277 595-602 NNP denotes Scripps
T31522 603-611 NNP denotes Research
T71261 611-612 -COMMA- denotes ,
T35502 613-615 NNP denotes CA
T7334 617-623 NN denotes Author
T39271 624-637 NNS denotes contributions
T23229 637-638 -COLON- denotes :
T96579 639-643 NNP denotes Y.W.
T39705 644-647 CC denotes and
T42905 648-654 NNP denotes J.D.A.
T79266 655-664 VBD denotes performed
T24435 665-669 NN denotes mass
T40533 670-682 NN denotes spectrometry
T87316 683-694 NNS denotes experiments
T22004 695-698 CC denotes and
T78881 699-707 VBN denotes analyzed
T59594 708-712 NNS denotes data
T5644 714-718 NNP denotes Y.W.
T28635 719-724 VBD denotes built
T26656 725-737 VBN denotes glycosylated
T61140 738-744 NNS denotes models
T39477 746-752 NNP denotes J.S.M.
T27735 753-756 CC denotes and
T29926 757-761 NNP denotes M.C.
T78796 762-772 VBD denotes supervised
T2570 773-784 NNS denotes experiments
T67310 786-790 NNP denotes Y.W.
T67352 790-791 -COMMA- denotes ,
T7695 792-798 NNP denotes J.D.A.
T6845 798-799 -COMMA- denotes ,
T42256 800-803 CC denotes and
T39920 804-808 NNP denotes D.W.
T61783 809-818 VBD denotes expressed
T62256 819-822 CC denotes and
T2668 823-831 VBN denotes purified
T56311 832-840 NNS denotes proteins
T20858 842-846 NNP denotes Y.W.
T15010 846-847 -COMMA- denotes ,
T84761 848-854 NNP denotes J.D.A.
T57399 854-855 -COMMA- denotes ,
T3803 856-859 CC denotes and
T5645 860-864 NNP denotes M.C.
T93723 865-870 VBD denotes wrote
T67909 871-874 DT denotes the
T83021 875-885 NN denotes manuscript
T48802 886-890 IN denotes with
T23558 891-896 NN denotes input
T68404 897-901 IN denotes from
T27851 902-905 DT denotes all
T89244 906-913 NNS denotes authors
T17353 915-924 VBG denotes Competing
T84757 925-934 NNS denotes interests
T14302 934-935 -COLON- denotes :
T41287 936-942 NNP denotes J.S.M.
T72306 943-945 VBZ denotes is
T40960 946-948 DT denotes an
T74509 949-957 NN denotes inventor
T39938 958-960 IN denotes on
T22300 961-965 NNP denotes U.S.
T28214 966-972 NN denotes patent
T67201 973-984 NN denotes application
T94482 985-987 UH denotes no
T83768 989-999 CD denotes 62/412,703
T67652 1000-1001 -LRB- denotes (
T51442 1001-1011 NNP denotes “Prefusion
T45886 1012-1023 NNP denotes Coronavirus
T45762 1024-1029 NNP denotes Spike
T27989 1030-1038 NNPS denotes Proteins
T91514 1039-1042 CC denotes and
T22858 1043-1048 PRP-DOLLAR- denotes Their
T71044 1049-1053 NNP denotes Use”
T91667 1053-1054 -RRB- denotes )
T81256 1054-1055 -COMMA- denotes ,
T29712 1056-1059 CC denotes and
T26694 1060-1064 NNP denotes D.W.
T65449 1065-1068 CC denotes and
T35934 1069-1075 NNP denotes J.S.M.
T29985 1076-1079 VBP denotes are
T59888 1080-1089 NNS denotes inventors
T73187 1090-1092 IN denotes on
T14729 1093-1097 NNP denotes U.S.
T7836 1098-1104 NN denotes patent
T77876 1105-1116 NN denotes application
T41038 1117-1119 UH denotes no
T68590 1121-1131 CD denotes 62/972,886
T90191 1132-1133 -LRB- denotes (
T27893 1133-1143 NN denotes “2019-nCoV
T19675 1144-1152 NNP denotes Vaccine”
T99791 1152-1153 -RRB- denotes )
T98672 1155-1159 NNS denotes Data
T27516 1160-1163 CC denotes and
T83136 1164-1173 NNS denotes materials
T13050 1174-1186 NN denotes availability
T52382 1186-1187 -COLON- denotes :
T46862 1188-1192 NNP denotes Mass
T78432 1193-1205 NN denotes spectrometry
T4780 1206-1209 JJ denotes raw
T78106 1210-1215 NNS denotes files
T75700 1216-1220 VBP denotes have
T11785 1221-1225 VBN denotes been
T60761 1226-1235 VBN denotes deposited
T42732 1236-1238 IN denotes in
T95127 1239-1242 DT denotes the
T76023 1243-1250 NNP denotes MassIVE
T96991 1251-1261 NNS denotes proteomics
T40642 1262-1270 NN denotes database
T6183 1271-1272 -LRB- denotes (
T95228 1272-1274 CD denotes 37
T63123 1274-1275 -RRB- denotes )
T41832 1277-1280 DT denotes The
T55839 1281-1288 NN denotes plasmid
T82720 1289-1291 VBZ denotes is
T31025 1292-1301 JJ denotes available
T3768 1302-1306 IN denotes from
T39412 1307-1313 NNP denotes J.S.M.
T65021 1314-1319 IN denotes under
T51702 1320-1321 DT denotes a
T57200 1322-1330 NN denotes material
T58552 1331-1339 NN denotes transfer
T84553 1340-1349 NN denotes agreement
T19192 1350-1354 IN denotes with
T51131 1355-1358 DT denotes The
T36566 1359-1369 NNP denotes University
T57819 1370-1372 IN denotes of
T69789 1373-1378 NNP denotes Texas
T52944 1379-1381 IN denotes at
T3118 1382-1389 NNP denotes Austin.
T94262 1390-1394 DT denotes This
T98450 1395-1399 NN denotes work
T65223 1400-1402 VBZ denotes is
T79487 1403-1411 VBN denotes licensed
T33453 1412-1417 IN denotes under
T36193 1418-1419 DT denotes a
T7454 1420-1428 JJ denotes Creative
T75693 1429-1436 NNP denotes Commons
T20145 1437-1448 NNP denotes Attribution
T8604 1449-1452 CD denotes 4.0
T80501 1453-1466 NNP denotes International
T87991 1467-1468 -LRB- denotes (
T86057 1468-1470 NN denotes CC
T64542 1471-1473 IN denotes BY
T27505 1474-1477 CD denotes 4.0
T9785 1477-1478 -RRB- denotes )
T46359 1479-1486 NN denotes license
T42059 1486-1487 -COMMA- denotes ,
T78484 1488-1493 WDT denotes which
T21281 1494-1501 VBZ denotes permits
T1695 1502-1514 JJ denotes unrestricted
T96118 1515-1518 NN denotes use
T60755 1518-1519 -COMMA- denotes ,
T81284 1520-1532 NN denotes distribution
T40055 1532-1533 -COMMA- denotes ,
T99988 1534-1537 CC denotes and
T99877 1538-1550 NN denotes reproduction
T90443 1551-1553 IN denotes in
T80218 1554-1557 DT denotes any
T38336 1558-1564 NN denotes medium
T84217 1564-1565 -COMMA- denotes ,
T10211 1566-1574 VBD denotes provided
T20972 1575-1578 DT denotes the
T48783 1579-1587 JJ denotes original
T57394 1588-1592 NN denotes work
T24531 1593-1595 VBZ denotes is
T78467 1596-1604 RB denotes properly
T90533 1605-1610 VBN denotes cited
T43297 1612-1614 TO denotes To
T62026 1615-1619 VB denotes view
T93626 1620-1621 DT denotes a
T21134 1622-1626 NN denotes copy
T19740 1627-1629 IN denotes of
T25870 1630-1634 DT denotes this
T42388 1635-1642 NN denotes license
T16468 1642-1643 -COMMA- denotes ,
T27273 1644-1649 NN denotes visit
T53986 1650-1655 NNS denotes https
T51915 1655-1656 -COLON- denotes :
T90082 1656-1694 CD denotes //creativecommons.org/licenses/by/4.0/
T79380 1696-1700 DT denotes This
T33129 1701-1708 NN denotes license
T31908 1709-1713 VBZ denotes does
T34843 1714-1717 RB denotes not
T43606 1718-1723 VB denotes apply
T98077 1724-1726 TO denotes to
T3152 1727-1734 NNS denotes figures
T84186 1734-1735 -COMMA- denotes ,
T61161 1736-1742 NNS denotes photos
T2767 1742-1743 -COMMA- denotes ,
T42979 1744-1751 NN denotes artwork
T34582 1751-1752 -COMMA- denotes ,
T33620 1753-1755 CC denotes or
T57700 1756-1761 JJ denotes other
T49083 1762-1769 NN denotes content
T95050 1770-1778 VBN denotes included
T84917 1779-1781 IN denotes in
T68918 1782-1785 DT denotes the
T41608 1786-1793 NN denotes article
T91060 1794-1798 WDT denotes that
T20796 1799-1801 VBZ denotes is
T75471 1802-1810 VBN denotes credited
T59709 1811-1813 TO denotes to
T29000 1814-1815 DT denotes a
T14056 1816-1821 JJ denotes third
T88593 1822-1827 NN denotes party
T22932 1827-1828 -SEMICOLON- denotes ;
T13010 1829-1835 VB denotes obtain
T68088 1836-1849 NN denotes authorization
T92571 1850-1854 IN denotes from
T55174 1855-1858 DT denotes the
T15137 1859-1865 NNS denotes rights
T78352 1866-1872 NN denotes holder
T2021 1873-1879 IN denotes before
T71469 1880-1885 VBG denotes using
T56266 1886-1890 JJ denotes such
T41051 1891-1899 NN denotes material
R36733 T43935 T93371 arg1Of We,thank
R50921 T19179 T93371 arg2Of and,thank
R95076 T59026 T35990 arg1Of Dixon,M.
R56818 T59026 T19179 arg1Of Dixon,and
R72082 T59323 T19179 arg2Of Gowland-Pryde,and
R31960 T59323 T91274 arg1Of Gowland-Pryde,M.
R53190 T93371 T55314 arg1Of thank,for
R3551 T37056 T55314 arg2Of supporting,for
R91591 T19814 T37056 arg2Of work,supporting
R31482 T19814 T86842 arg1Of work,our
R97448 T19814 T80410 arg1Of work,on
R68522 T52427 T80410 arg2Of project,on
R54788 T52427 T76062 arg1Of project,this
R61304 T37056 T97359 arg1Of supporting,during
R88010 T16507 T97359 arg2Of difficulties,during
R22212 T16507 T59663 arg1Of difficulties,the
R83417 T16507 T95590 arg1Of difficulties,arising
R44397 T95590 T85495 arg1Of arising,from
R50426 T38374 T85495 arg2Of and,from
R7215 T38374 T30319 arg1Of and,the
R13721 T82565 T38374 arg1Of pandemic,and
R51452 T32012 T38374 arg2Of Ould,and
R7597 T32012 T65104 arg1Of Ould,G.
R70196 T38374 T50942 arg1Of and,for
R3167 T75990 T50942 arg2Of reading,for
R47207 T75990 T30294 arg1Of reading,critical
R30162 T75990 T44821 arg1Of reading,of
R93836 T3549 T44821 arg2Of manuscript,of
R97230 T3549 T46959 arg1Of manuscript,the
R23159 T73626 T96678 arg1Of Funding,:
R54396 T32670 T71770 arg1Of work,This
R11362 T32670 T53456 arg1Of work,was
R42613 T24413 T53456 arg2Of funded,was
R70283 T28706 T24413 arg1Of Foundation,funded
R81726 T32670 T24413 arg2Of work,funded
R37626 T28706 T52314 arg2Of Foundation,by
R13936 T28706 T41147 arg1Of Foundation,the
R57349 T88914 T10764 arg1Of Initiative,International
R3427 T88914 T50064 arg1Of Initiative,AIDS
R77799 T88914 T21205 arg1Of Initiative,Vaccine
R41368 T28706 T88914 arg1Of Foundation,Initiative
R35559 T88914 T65125 arg1Of Initiative,","
R84079 T68191 T65125 arg2Of Bill,","
R44023 T28706 T68191 arg1Of Foundation,Bill
R98236 T65125 T38094 arg1Of ",",and
R32659 T96825 T38094 arg2Of Gates,and
R54224 T96825 T94876 arg1Of Gates,Melinda
R26206 T28706 T96825 arg1Of Foundation,Gates
R56679 T24413 T65475 arg1Of funded,through
R20875 T3738 T65475 arg2Of Collaboration,through
R67356 T3738 T50677 arg1Of Collaboration,the
R57859 T3738 T66663 arg1Of Collaboration,for
R92383 T96534 T66663 arg2Of and,for
R77279 T43413 T35657 arg1Of Discovery,AIDS
R21904 T43413 T48085 arg1Of Discovery,Vaccine
R50187 T43413 T15064 arg1Of Discovery,(
R48777 T81469 T15064 arg2Of and,(
R85072 T39479 T15064 arg3Of ),(
R11194 T72497 T81469 arg1Of OPP1084519,and
R3133 T55228 T81469 arg2Of 1196345,and
R73602 T55228 T99587 arg1Of 1196345,to
R52910 T78418 T99587 arg2Of M.C.,to
R5625 T43413 T6018 arg1Of Discovery,","
R81318 T45283 T6018 arg2Of NIAID,","
R91787 T45283 T29775 arg1Of NIAID,the
R33012 T45283 T93814 arg1Of NIAID,(
R43427 T81400 T93814 arg2Of R01-AI127521,(
R43809 T95661 T93814 arg3Of ),(
R59226 T81400 T46165 arg1Of R01-AI127521,to
R53099 T86993 T46165 arg2Of J.S.M.,to
R33493 T96534 T97850 arg1Of and,","
R30784 T43413 T96534 arg1Of Discovery,and
R64464 T74764 T96534 arg2Of Consortium,and
R89125 T74764 T89902 arg1Of Consortium,the
R52197 T74764 T11178 arg1Of Consortium,Scripps
R72056 T74764 T25629 arg1Of Consortium,for
R86870 T16501 T25629 arg2Of Development,for
R12460 T16501 T19310 arg1Of Development,HIV
R89154 T16501 T91871 arg1Of Development,Vaccine
R92252 T16501 T68793 arg1Of Development,(
R59921 T40104 T68793 arg2Of CHAVD,(
R11432 T97000 T68793 arg3Of ),(
R58727 T16501 T13011 arg1Of Development,(
R40841 T52113 T13011 arg2Of AI144462,(
R78671 T52833 T13011 arg3Of ),(
R14468 T52113 T63240 arg1Of AI144462,to
R95693 T20653 T63240 arg2Of M.C.,to
R41144 T18403 T74779 arg1Of M.C.,is
R79972 T27493 T74779 arg2Of and,is
R69990 T27493 T11366 arg1Of and,a
R4863 T73977 T71123 arg1Of Fellow,Supernumerary
R40686 T73977 T87878 arg1Of Fellow,of
R82495 T52677 T87878 arg2Of College,of
R42833 T52677 T7407 arg1Of College,Oriel
R77953 T52677 T83803 arg1Of College,","
R29811 T3931 T83803 arg2Of Oxford,","
R34125 T27493 T43912 arg1Of and,","
R75375 T73977 T27493 arg1Of Fellow,and
R63493 T3538 T27493 arg2Of adjunct,and
R89385 T3538 T23825 arg1Of adjunct,professor
R16103 T3538 T45328 arg1Of adjunct,at
R61705 T31522 T45328 arg2Of Research,at
R25730 T31522 T19277 arg1Of Research,Scripps
R6567 T31522 T71261 arg1Of Research,","
R42638 T35502 T71261 arg2Of CA,","
R43256 T39271 T7334 arg1Of contributions,Author
R94973 T39271 T23229 arg1Of contributions,:
R4354 T39705 T23229 arg2Of and,:
R23373 T96579 T39705 arg1Of Y.W.,and
R46845 T42905 T39705 arg2Of J.D.A.,and
R56105 T39271 T79266 arg1Of contributions,performed
R14570 T22004 T79266 arg2Of and,performed
R66404 T87316 T24435 arg1Of experiments,mass
R78955 T87316 T40533 arg1Of experiments,spectrometry
R92082 T87316 T22004 arg1Of experiments,and
R65988 T59594 T22004 arg2Of data,and
R6118 T59594 T78881 arg2Of data,analyzed
R69448 T5644 T28635 arg1Of Y.W.,built
R77023 T61140 T28635 arg2Of models,built
R43199 T61140 T26656 arg2Of models,glycosylated
R87756 T39477 T27735 arg1Of J.S.M.,and
R2627 T29926 T27735 arg2Of M.C.,and
R14156 T27735 T78796 arg1Of and,supervised
R57793 T2570 T78796 arg2Of experiments,supervised
R16385 T67310 T67352 arg1Of Y.W.,","
R69136 T7695 T67352 arg2Of J.D.A.,","
R84697 T42256 T6845 arg1Of and,","
R62800 T67352 T42256 arg1Of ",",and
R90155 T39920 T42256 arg2Of D.W.,and
R78720 T42256 T61783 arg1Of and,expressed
R44980 T56311 T61783 arg2Of proteins,expressed
R23097 T56311 T62256 arg1Of proteins,and
R89988 T56311 T2668 arg2Of proteins,purified
R54528 T20858 T15010 arg1Of Y.W.,","
R48255 T84761 T15010 arg2Of J.D.A.,","
R63549 T3803 T57399 arg1Of and,","
R12086 T15010 T3803 arg1Of ",",and
R11143 T5645 T3803 arg2Of M.C.,and
R22986 T3803 T93723 arg1Of and,wrote
R32867 T83021 T93723 arg2Of manuscript,wrote
R12147 T83021 T67909 arg1Of manuscript,the
R51567 T83021 T48802 arg1Of manuscript,with
R85488 T23558 T48802 arg2Of input,with
R13598 T23558 T68404 arg1Of input,from
R26026 T89244 T68404 arg2Of authors,from
R20760 T89244 T27851 arg1Of authors,all
R4964 T84757 T17353 arg1Of interests,Competing
R96521 T84757 T14302 arg1Of interests,:
R28550 T72306 T14302 arg2Of is,:
R44368 T41287 T72306 arg1Of J.S.M.,is
R95631 T74509 T72306 arg2Of inventor,is
R13983 T74509 T40960 arg1Of inventor,an
R25661 T74509 T39938 arg1Of inventor,on
R47632 T67201 T39938 arg2Of application,on
R92511 T67201 T22300 arg1Of application,U.S.
R86699 T67201 T28214 arg1Of application,patent
R55821 T72306 T94482 arg1Of is,no
R33569 T83768 T67652 arg1Of "62/412,703",(
R73832 T91514 T67652 arg2Of and,(
R98979 T91667 T67652 arg3Of ),(
R64319 T27989 T51442 arg1Of Proteins,“Prefusion
R47558 T27989 T45886 arg1Of Proteins,Coronavirus
R39362 T27989 T45762 arg1Of Proteins,Spike
R56953 T27989 T91514 arg1Of Proteins,and
R54704 T71044 T91514 arg2Of Use”,and
R54401 T71044 T22858 arg1Of Use”,Their
R90497 T29712 T81256 arg1Of and,","
R18276 T83768 T29712 arg1Of "62/412,703",and
R13036 T65449 T29712 arg2Of and,and
R51278 T26694 T65449 arg1Of D.W.,and
R88856 T35934 T65449 arg2Of J.S.M.,and
R53138 T29712 T29985 arg1Of and,are
R37378 T59888 T29985 arg2Of inventors,are
R30653 T59888 T73187 arg1Of inventors,on
R49515 T77876 T73187 arg2Of application,on
R2006 T77876 T14729 arg1Of application,U.S.
R43603 T77876 T7836 arg1Of application,patent
R76878 T29985 T41038 arg1Of are,no
R50752 T68590 T90191 arg1Of "62/972,886",(
R31731 T27893 T90191 arg2Of “2019-nCoV,(
R57720 T99791 T90191 arg3Of ),(
R26198 T27893 T19675 arg1Of “2019-nCoV,Vaccine”
R50276 T13050 T98672 arg1Of availability,Data
R20754 T98672 T27516 arg1Of Data,and
R38918 T83136 T27516 arg2Of materials,and
R41337 T13050 T83136 arg1Of availability,materials
R70150 T13050 T52382 arg1Of availability,:
R95592 T78106 T46862 arg1Of files,Mass
R92108 T78106 T78432 arg1Of files,spectrometry
R79744 T78106 T4780 arg1Of files,raw
R73226 T78106 T75700 arg1Of files,have
R42988 T60761 T75700 arg2Of deposited,have
R99617 T78106 T11785 arg1Of files,been
R89314 T60761 T11785 arg2Of deposited,been
R76980 T78106 T60761 arg2Of files,deposited
R54204 T60761 T42732 arg1Of deposited,in
R70897 T40642 T42732 arg2Of database,in
R27134 T40642 T95127 arg1Of database,the
R23853 T40642 T76023 arg1Of database,MassIVE
R98088 T40642 T96991 arg1Of database,proteomics
R9198 T40642 T6183 arg1Of database,(
R24176 T95228 T6183 arg2Of 37,(
R68630 T63123 T6183 arg3Of ),(
R11480 T55839 T41832 arg1Of plasmid,The
R79492 T55839 T82720 arg1Of plasmid,is
R14140 T31025 T82720 arg2Of available,is
R77459 T79487 T82720 arg3Of licensed,is
R17987 T55839 T31025 arg1Of plasmid,available
R46739 T31025 T3768 arg1Of available,from
R71722 T39412 T3768 arg2Of J.S.M.,from
R9986 T82720 T65021 arg1Of is,under
R26915 T84553 T65021 arg2Of agreement,under
R82499 T84553 T51702 arg1Of agreement,a
R55857 T84553 T57200 arg1Of agreement,material
R51020 T84553 T58552 arg1Of agreement,transfer
R53084 T84553 T19192 arg1Of agreement,with
R26804 T36566 T19192 arg2Of University,with
R48192 T36566 T51131 arg1Of University,The
R85045 T36566 T57819 arg1Of University,of
R21687 T69789 T57819 arg2Of Texas,of
R54330 T36566 T52944 arg1Of University,at
R77870 T3118 T52944 arg2Of Austin.,at
R70996 T98450 T94262 arg1Of work,This
R19437 T98450 T65223 arg1Of work,is
R45779 T79487 T65223 arg2Of licensed,is
R96763 T98450 T79487 arg2Of work,licensed
R88033 T79487 T33453 arg1Of licensed,under
R10234 T46359 T33453 arg2Of license,under
R66512 T46359 T36193 arg1Of license,a
R19006 T46359 T7454 arg1Of license,Creative
R95871 T80501 T75693 arg1Of International,Commons
R36713 T80501 T20145 arg1Of International,Attribution
R61934 T80501 T8604 arg1Of International,4.0
R95824 T46359 T80501 arg1Of license,International
R33869 T46359 T87991 arg1Of license,(
R57209 T86057 T87991 arg2Of CC,(
R7433 T9785 T87991 arg3Of ),(
R74239 T86057 T64542 arg1Of CC,BY
R77609 T27505 T64542 arg2Of 4.0,BY
R81813 T46359 T42059 arg1Of license,","
R34926 T46359 T78484 arg1Of license,which
R36253 T46359 T21281 arg1Of license,permits
R23747 T99988 T21281 arg2Of and,permits
R24971 T96118 T1695 arg1Of use,unrestricted
R4157 T96118 T60755 arg1Of use,","
R59909 T81284 T60755 arg2Of distribution,","
R75143 T99988 T40055 arg1Of and,","
R88146 T60755 T99988 arg1Of ",",and
R98009 T99877 T99988 arg2Of reproduction,and
R70245 T21281 T90443 arg1Of permits,in
R76098 T38336 T90443 arg2Of medium,in
R31785 T38336 T80218 arg1Of medium,any
R1851 T21281 T84217 arg1Of permits,","
R5906 T10211 T84217 arg2Of provided,","
R90260 T46359 T10211 arg1Of license,provided
R82083 T90533 T10211 arg2Of cited,provided
R10647 T57394 T20972 arg1Of work,the
R25399 T57394 T48783 arg1Of work,original
R42621 T57394 T24531 arg1Of work,is
R87959 T90533 T24531 arg2Of cited,is
R12433 T90533 T78467 arg1Of cited,properly
R28546 T57394 T90533 arg2Of work,cited
R69902 T62026 T43297 arg1Of view,To
R19479 T21134 T62026 arg2Of copy,view
R45844 T21134 T93626 arg1Of copy,a
R79812 T21134 T19740 arg1Of copy,of
R8548 T42388 T19740 arg2Of license,of
R73456 T42388 T25870 arg1Of license,this
R36397 T42388 T16468 arg1Of license,","
R60667 T53986 T16468 arg2Of https,","
R84296 T53986 T27273 arg1Of https,visit
R32814 T53986 T51915 arg1Of https,:
R47669 T90082 T51915 arg2Of //creativecommons.org/licenses/by/4.0/,:
R51155 T33129 T79380 arg1Of license,This
R64202 T33129 T31908 arg1Of license,does
R55404 T22932 T31908 arg2Of ;,does
R85433 T22932 T34843 arg1Of ;,not
R7026 T33129 T43606 arg1Of license,apply
R64617 T43606 T98077 arg1Of apply,to
R16165 T33620 T98077 arg2Of or,to
R68679 T3152 T84186 arg1Of figures,","
R92138 T61161 T84186 arg2Of photos,","
R94718 T84186 T2767 arg1Of ",",","
R68929 T42979 T2767 arg2Of artwork,","
R20820 T33620 T34582 arg1Of or,","
R48643 T2767 T33620 arg1Of ",",or
R47454 T49083 T33620 arg2Of content,or
R50940 T49083 T57700 arg1Of content,other
R88527 T33620 T95050 arg2Of or,included
R55452 T95050 T84917 arg1Of included,in
R5268 T41608 T84917 arg2Of article,in
R62870 T41608 T68918 arg1Of article,the
R95942 T41608 T91060 arg1Of article,that
R46358 T41608 T20796 arg1Of article,is
R27153 T75471 T20796 arg2Of credited,is
R37209 T41608 T75471 arg2Of article,credited
R46800 T75471 T59709 arg1Of credited,to
R2339 T88593 T59709 arg2Of party,to
R83932 T88593 T29000 arg1Of party,a
R79099 T88593 T14056 arg1Of party,third
R98215 T43606 T22932 arg1Of apply,;
R81342 T13010 T22932 arg2Of obtain,;
R19637 T33129 T13010 arg1Of license,obtain
R69423 T68088 T13010 arg2Of authorization,obtain
R83597 T13010 T92571 arg1Of obtain,from
R51069 T78352 T92571 arg2Of holder,from
R22575 T78352 T55174 arg1Of holder,the
R55999 T78352 T15137 arg1Of holder,rights
R84740 T13010 T2021 arg1Of obtain,before
R83704 T71469 T2021 arg2Of using,before
R4979 T33129 T71469 arg1Of license,using
R75748 T41051 T71469 arg2Of material,using
R74881 T41051 T56266 arg1Of material,such

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T86 461-464 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T87 832-840 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T88 1030-1038 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T120 832-840 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T68 461-464 Species denotes HIV NCBItxid:57667|NCBItxid:35274|NCBItxid:12721|NCBItxid:11709|NCBItxid:11676
T73 1134-1143 Species denotes 2019-nCoV NCBItxid:2697049
T74 1281-1291 Species denotes plasmid is NCBItxid:36549

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T105 0-15 Sentence denotes Acknowledgments
T106 16-27 Sentence denotes We thank M.
T107 28-40 Sentence denotes Dixon and M.
T108 41-151 Sentence denotes Gowland-Pryde for supporting our work on this project during the difficulties arising from the pandemic and G.
T109 152-196 Sentence denotes Ould for critical reading of the manuscript.
T110 197-205 Sentence denotes Funding:
T111 206-512 Sentence denotes This work was funded by the International AIDS Vaccine Initiative, Bill and Melinda Gates Foundation through the Collaboration for AIDS Vaccine Discovery (OPP1084519 and 1196345 to M.C.), the NIAID (R01-AI127521 to J.S.M.), and the Scripps Consortium for HIV Vaccine Development (CHAVD) (AI144462 to M.C.).
T112 513-616 Sentence denotes M.C. is a Supernumerary Fellow of Oriel College, Oxford, and professor adjunct at Scripps Research, CA.
T113 617-713 Sentence denotes Author contributions: Y.W. and J.D.A. performed mass spectrometry experiments and analyzed data.
T114 714-745 Sentence denotes Y.W. built glycosylated models.
T115 746-785 Sentence denotes J.S.M. and M.C. supervised experiments.
T116 786-841 Sentence denotes Y.W., J.D.A., and D.W. expressed and purified proteins.
T117 842-914 Sentence denotes Y.W., J.D.A., and M.C. wrote the manuscript with input from all authors.
T118 915-988 Sentence denotes Competing interests: J.S.M. is an inventor on U.S. patent application no.
T119 989-1120 Sentence denotes 62/412,703 (“Prefusion Coronavirus Spike Proteins and Their Use”), and D.W. and J.S.M. are inventors on U.S. patent application no.
T120 1121-1154 Sentence denotes 62/972,886 (“2019-nCoV Vaccine”).
T121 1155-1187 Sentence denotes Data and materials availability:
T122 1188-1276 Sentence denotes Mass spectrometry raw files have been deposited in the MassIVE proteomics database (37).
T123 1277-1389 Sentence denotes The plasmid is available from J.S.M. under a material transfer agreement with The University of Texas at Austin.
T124 1390-1611 Sentence denotes This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
T125 1612-1695 Sentence denotes To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.
T126 1696-1900 Sentence denotes This license does not apply to figures, photos, artwork, or other content included in the article that is credited to a third party; obtain authorization from the rights holder before using such material.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T50 248-252 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T51 337-341 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2535 1024-1038 Protein denotes Spike Proteins https://www.uniprot.org/uniprot/P31340

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T41 1538-1550 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T39 1538-1550 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T47 1538-1550 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T105 0-15 Sentence denotes Acknowledgments
T106 16-27 Sentence denotes We thank M.
T107 28-40 Sentence denotes Dixon and M.
T108 41-151 Sentence denotes Gowland-Pryde for supporting our work on this project during the difficulties arising from the pandemic and G.
T109 152-196 Sentence denotes Ould for critical reading of the manuscript.
T110 197-205 Sentence denotes Funding:
T111 206-512 Sentence denotes This work was funded by the International AIDS Vaccine Initiative, Bill and Melinda Gates Foundation through the Collaboration for AIDS Vaccine Discovery (OPP1084519 and 1196345 to M.C.), the NIAID (R01-AI127521 to J.S.M.), and the Scripps Consortium for HIV Vaccine Development (CHAVD) (AI144462 to M.C.).
T112 513-616 Sentence denotes M.C. is a Supernumerary Fellow of Oriel College, Oxford, and professor adjunct at Scripps Research, CA.
T113 617-713 Sentence denotes Author contributions: Y.W. and J.D.A. performed mass spectrometry experiments and analyzed data.
T114 714-745 Sentence denotes Y.W. built glycosylated models.
T115 746-785 Sentence denotes J.S.M. and M.C. supervised experiments.
T116 786-841 Sentence denotes Y.W., J.D.A., and D.W. expressed and purified proteins.
T117 842-914 Sentence denotes Y.W., J.D.A., and M.C. wrote the manuscript with input from all authors.
T118 915-988 Sentence denotes Competing interests: J.S.M. is an inventor on U.S. patent application no.
T119 989-1120 Sentence denotes 62/412,703 (“Prefusion Coronavirus Spike Proteins and Their Use”), and D.W. and J.S.M. are inventors on U.S. patent application no.
T120 1121-1154 Sentence denotes 62/972,886 (“2019-nCoV Vaccine”).
T121 1155-1187 Sentence denotes Data and materials availability:
T122 1188-1276 Sentence denotes Mass spectrometry raw files have been deposited in the MassIVE proteomics database (37).
T123 1277-1389 Sentence denotes The plasmid is available from J.S.M. under a material transfer agreement with The University of Texas at Austin.
T124 1390-1611 Sentence denotes This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
T125 1612-1695 Sentence denotes To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.
T126 1696-1900 Sentence denotes This license does not apply to figures, photos, artwork, or other content included in the article that is credited to a third party; obtain authorization from the rights holder before using such material.