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PMC:7199903 / 156-415 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 202-207 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 9-17 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 77-86 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 21-31 http://purl.obolibrary.org/obo/CLO_0009985 denotes is focused
T2 124-127 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 128-130 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T4 202-207 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5 212-217 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T2 77-86 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T3 145-150 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T4 162-167 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T5 202-207 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T6 212-217 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 222-228 http://purl.obolibrary.org/obo/IDO_0000586 denotes infect

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T20 6-7 CD denotes 2
T21 8-9 -LRB- denotes (
T22 9-19 NN denotes SARS-CoV-2
T23 19-20 -RRB- denotes )
T24 21-23 VBZ denotes is
T25 24-31 VBN denotes focused
T26 32-34 IN denotes on
T27 35-38 DT denotes the
T28 39-47 JJ denotes trimeric
T29 48-53 NN denotes spike
T30 54-61 NN denotes protein
T31 62-66 WDT denotes that
T32 67-76 VBZ denotes initiates
T33 77-86 NN denotes infection
T34 88-92 DT denotes Each
T35 93-101 NN denotes protomer
T36 102-104 IN denotes in
T37 105-108 DT denotes the
T38 109-117 JJ denotes trimeric
T39 118-123 NN denotes spike
T40 124-127 VBZ denotes has
T41 128-130 CD denotes 22
T42 131-144 NN denotes glycosylation
T43 145-150 NNS denotes sites
T44 152-155 WRB denotes How
T45 156-161 DT denotes these
T46 162-167 NNS denotes sites
T47 168-171 VBP denotes are
T48 172-184 VBN denotes glycosylated
T49 185-188 MD denotes may
T50 189-195 VB denotes affect
T51 196-201 WDT denotes which
T52 202-207 NNS denotes cells
T53 208-211 DT denotes the
T54 212-217 NN denotes virus
T55 218-221 MD denotes can
T56 222-228 VB denotes infect
T57 229-232 CC denotes and
T58 233-238 MD denotes could
T59 239-245 VB denotes shield
T60 246-250 DT denotes some
T61 251-259 NNS denotes epitopes
R22 T25 T24 arg2Of focused,is
R24 T25 T26 arg1Of focused,on
R25 T30 T26 arg2Of protein,on
R26 T30 T27 arg1Of protein,the
R27 T30 T28 arg1Of protein,trimeric
R28 T30 T29 arg1Of protein,spike
R29 T30 T31 arg1Of protein,that
R19 T22 T21 arg2Of SARS-CoV-2,(
R20 T23 T21 arg3Of ),(
R30 T30 T32 arg1Of protein,initiates
R31 T33 T32 arg2Of infection,initiates
R32 T35 T34 arg1Of protomer,Each
R33 T35 T36 arg1Of protomer,in
R34 T39 T36 arg2Of spike,in
R35 T39 T37 arg1Of spike,the
R36 T39 T38 arg1Of spike,trimeric
R37 T35 T40 arg1Of protomer,has
R38 T43 T40 arg2Of sites,has
R39 T43 T41 arg1Of sites,22
R40 T43 T42 arg1Of sites,glycosylation
R41 T48 T44 arg1Of glycosylated,How
R42 T46 T45 arg1Of sites,these
R43 T46 T47 arg1Of sites,are
R44 T48 T47 arg2Of glycosylated,are
R45 T46 T48 arg2Of sites,glycosylated
R46 T44 T49 arg1Of How,may
R47 T50 T49 arg2Of affect,may
R48 T44 T50 arg1Of How,affect
R49 T51 T50 arg2Of which,affect
R50 T52 T51 arg1Of cells,which
R51 T54 T53 arg1Of virus,the
R52 T54 T55 arg1Of virus,can
R53 T56 T55 arg2Of infect,can
R54 T54 T56 arg1Of virus,infect
R55 T52 T56 arg2Of cells,infect
R56 T50 T57 arg1Of affect,and
R57 T59 T57 arg2Of shield,and
R58 T44 T58 arg1Of How,could
R59 T59 T58 arg2Of shield,could
R60 T44 T59 arg1Of How,shield
R61 T61 T59 arg2Of epitopes,shield
R62 T61 T60 arg1Of epitopes,some

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T2 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 202-207 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T4 9-19 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T4 88-151 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 9-19 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 77-86 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
17 48-53 Gene denotes spike Gene:43740568
20 9-19 Species denotes SARS-CoV-2 Tax:2697049
21 118-123 Gene denotes spike Gene:43740568
25 77-86 Disease denotes infection MESH:D007239

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2 48-61 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T1 131-144 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T1 131-144 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 131-144 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 88-151 Sentence denotes Each protomer in the trimeric spike has 22 glycosylation sites.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
17 48-53 Gene denotes spike Gene:43740568
20 9-19 Species denotes SARS-CoV-2 Tax:2697049
21 118-123 Gene denotes spike Gene:43740568
25 77-86 Disease denotes infection MESH:D007239